Wall clock time and date at job start Tue Mar 31 2020 21:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34238 * 126.27577 * 2 1 4 4 H 0.96996 * 125.74459 * 359.97438 * 3 2 1 5 5 N 1.39934 * 108.51883 * 180.24098 * 3 2 1 6 6 C 1.30532 * 108.89478 * 359.74222 * 5 3 2 7 7 Cl 1.73597 * 126.00264 * 179.97438 * 6 5 3 8 8 C 1.38064 * 126.28319 * 179.80902 * 2 1 3 9 9 C 1.47385 * 126.42119 * 0.03156 * 8 2 1 10 10 O 1.21605 * 120.00196 * 269.70209 * 9 8 2 11 11 N 1.34781 * 119.99734 * 89.71032 * 9 8 2 12 12 C 1.44786 * 120.18151 * 359.97438 * 11 9 8 13 13 C 1.51511 * 112.21761 * 264.53388 * 12 11 9 14 14 C 1.51313 * 113.25320 * 285.36695 * 13 12 11 15 15 H 1.09007 * 111.31589 * 185.23917 * 14 13 12 16 16 C 1.54719 * 106.48192 * 307.66145 * 14 13 12 17 17 C 1.54626 * 104.28662 * 88.99305 * 16 14 13 18 18 C 1.50879 * 105.21125 * 11.53901 * 17 16 14 19 19 H 1.08998 * 105.89888 * 122.36212 * 18 17 16 20 20 C 1.49819 * 120.17763 * 179.97438 * 11 9 8 21 21 N 1.48062 * 109.90798 * 8.03816 * 18 17 16 22 22 C 1.36930 * 127.84226 * 155.15954 * 21 18 17 23 23 H 1.08001 * 120.00539 * 159.47210 * 22 21 18 24 24 C 1.38819 * 119.99855 * 339.48269 * 22 21 18 25 25 N 1.31622 * 119.99956 * 154.98787 * 24 22 21 26 26 Si 1.86794 * 119.99558 * 334.97935 * 24 22 21 27 27 H 1.48502 * 109.47044 * 88.69026 * 26 24 22 28 28 H 1.48502 * 109.47066 * 208.68500 * 26 24 22 29 29 H 1.48501 * 109.47709 * 328.68618 * 26 24 22 30 30 H 1.09001 * 109.47615 * 270.18326 * 1 2 3 31 31 H 1.08997 * 109.47061 * 30.18880 * 1 2 3 32 32 H 1.09007 * 109.46818 * 150.18546 * 1 2 3 33 33 H 1.09003 * 108.92910 * 143.83234 * 12 11 9 34 34 H 1.08992 * 108.93295 * 25.24247 * 12 11 9 35 35 H 1.08998 * 108.72623 * 164.39440 * 13 12 11 36 36 H 1.09004 * 108.73153 * 46.34398 * 13 12 11 37 37 H 1.08992 * 110.45554 * 207.83665 * 16 14 13 38 38 H 1.08999 * 110.45706 * 330.39628 * 16 14 13 39 39 H 1.08994 * 110.16989 * 252.68465 * 17 16 14 40 40 H 1.08999 * 110.53491 * 130.58226 * 17 16 14 41 41 H 1.08996 * 109.54532 * 270.57897 * 20 11 9 42 42 H 1.09007 * 109.54528 * 30.84823 * 20 11 9 43 43 H 0.96998 * 119.99134 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0822 0.0000 4 1 2.0019 2.0048 -0.0004 5 7 3.6339 0.6554 -0.0056 6 6 3.6599 -0.6496 -0.0034 7 17 5.0842 -1.6420 -0.0090 8 6 2.3241 -1.1129 0.0037 9 6 1.8859 -2.5201 0.0077 10 8 1.7099 -3.0992 1.0625 11 7 1.6804 -3.1653 -1.1577 12 6 1.8884 -2.4795 -2.4158 13 6 0.6028 -1.9044 -2.9742 14 6 -0.3139 -2.9533 -3.5649 15 1 -1.1839 -2.4981 -4.0382 16 6 0.5375 -3.7641 -4.5707 17 6 1.1528 -4.9001 -3.7211 18 6 0.4149 -4.8550 -2.4059 19 1 -0.0279 -5.8428 -2.2779 20 6 1.2355 -4.5959 -1.1583 21 7 -0.7161 -3.9035 -2.4947 22 6 -1.8683 -3.8967 -1.7548 23 1 -2.4530 -2.9923 -1.6742 24 6 -2.2847 -5.0523 -1.1082 25 7 -3.0553 -4.9699 -0.0443 26 14 -1.7516 -6.7243 -1.7482 27 1 -0.4591 -7.1044 -1.1233 28 1 -2.7830 -7.7368 -1.4069 29 1 -1.5888 -6.6611 -3.2229 30 1 -0.3634 0.0033 1.0276 31 1 -0.3633 0.8883 -0.5167 32 1 -0.3633 -0.8917 -0.5110 33 1 2.3040 -3.1829 -3.1374 34 1 2.6014 -1.6694 -2.2633 35 1 0.8513 -1.1800 -3.7498 36 1 0.0734 -1.3880 -2.1733 37 1 -0.0928 -4.1739 -5.3599 38 1 1.3232 -3.1393 -4.9953 39 1 2.2160 -4.7184 -3.5642 40 1 1.0024 -5.8646 -4.2059 41 1 2.1081 -5.2491 -1.1521 42 1 0.6275 -4.7891 -0.2744 43 1 -3.3465 -5.7775 0.4072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045793276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:56 Heat of formation + Delta-G solvation = 89.426067 kcal Electronic energy + Delta-G solvation = -29475.902938 eV Core-core repulsion = 25585.465690 eV Total energy + Delta-G solvation = -3890.437248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.60656 -40.01360 -37.98450 -36.87360 -34.41705 -33.02041 -32.71865 -32.18636 -31.08073 -30.13497 -28.02181 -27.01861 -26.06735 -23.93859 -23.06359 -21.99717 -21.42881 -20.17159 -19.33546 -18.48443 -17.54320 -17.14471 -16.35613 -15.58196 -15.56672 -15.29437 -15.12316 -14.75707 -14.59948 -13.74877 -13.67331 -13.52246 -13.12839 -12.97707 -12.78772 -12.55237 -12.27288 -12.16759 -11.99655 -11.79759 -11.66037 -11.58710 -11.36843 -11.34515 -10.95615 -10.82838 -10.70349 -10.57857 -10.24056 -9.90601 -9.75325 -9.54014 -9.49410 -9.17451 -8.68005 -8.53291 -8.04877 -7.11706 -5.98478 -3.25142 1.39437 1.49696 2.18194 2.82293 3.02754 3.30534 3.45878 3.47485 3.60454 4.51226 4.52069 4.74122 4.81493 4.99399 5.10559 5.11851 5.20055 5.29945 5.36500 5.48050 5.51606 5.59453 5.72071 5.75635 5.80250 5.84406 5.95664 6.02616 6.07296 6.10319 6.23289 6.25102 6.38824 6.43332 6.56883 6.64540 6.83324 6.84623 6.92444 7.06556 7.20894 7.63723 7.99384 8.28834 8.71243 8.77079 9.65364 10.22591 11.17772 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.004955 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.609938 B = 5648.976015 C = 5885.012966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.148 3.852 3 N -0.451 5.451 4 H 0.446 0.554 5 N -0.283 5.283 6 C 0.157 3.843 7 Cl 0.015 6.985 8 C -0.255 4.255 9 C 0.594 3.406 10 O -0.532 6.532 11 N -0.577 5.577 12 C 0.112 3.888 13 C -0.153 4.153 14 C 0.153 3.847 15 H 0.072 0.928 16 C -0.132 4.132 17 C -0.121 4.121 18 C 0.120 3.880 19 H 0.042 0.958 20 C 0.120 3.880 21 N -0.586 5.586 22 C -0.233 4.233 23 H 0.090 0.910 24 C 0.030 3.970 25 N -0.897 5.897 26 Si 0.873 3.127 27 H -0.283 1.283 28 H -0.303 1.303 29 H -0.275 1.275 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.093 0.907 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.574 10.349 -6.309 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.017 3.983 3 N -0.161 5.161 4 H 0.292 0.708 5 N -0.108 5.108 6 C -0.036 4.036 7 Cl 0.042 6.958 8 C -0.270 4.270 9 C 0.379 3.621 10 O -0.408 6.408 11 N -0.309 5.309 12 C -0.012 4.012 13 C -0.193 4.193 14 C 0.046 3.954 15 H 0.090 0.910 16 C -0.171 4.171 17 C -0.158 4.158 18 C 0.013 3.987 19 H 0.059 0.941 20 C -0.002 4.002 21 N -0.309 5.309 22 C -0.360 4.360 23 H 0.108 0.892 24 C -0.170 4.170 25 N -0.539 5.539 26 Si 0.705 3.295 27 H -0.212 1.212 28 H -0.232 1.232 29 H -0.202 1.202 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.061 10.859 -5.545 17.151 hybrid contribution -0.179 -1.284 -0.267 1.324 sum 11.883 9.575 -5.812 16.330 Atomic orbital electron populations 1.20793 0.85259 1.05520 1.04891 1.21488 0.95018 0.85725 0.96097 1.45793 1.02930 1.08560 1.58798 0.70792 1.77067 0.96796 1.10645 1.26334 1.22498 0.88595 0.90444 1.02029 1.98404 1.35479 1.65067 1.96806 1.19848 0.90793 0.95007 1.21378 1.17091 0.77285 0.83928 0.83835 1.90782 1.51368 1.67628 1.31021 1.48019 1.65452 1.12584 1.04842 1.20975 0.97023 0.96923 0.86297 1.22099 0.97209 0.99403 1.00632 1.21187 0.94543 0.90914 0.88727 0.90952 1.22749 0.99088 0.97203 0.98071 1.21888 0.99160 0.99161 0.95641 1.20663 0.89791 0.95751 0.92459 0.94114 1.22343 0.97266 0.79193 1.01444 1.45221 1.15157 1.31189 1.39363 1.18405 0.98054 0.96487 1.23020 0.89227 1.24939 0.97778 0.97271 0.97017 1.69862 1.38581 1.28548 1.16926 0.87001 0.76539 0.86089 0.79883 1.21172 1.23175 1.20158 0.88895 0.90267 0.87385 0.90098 0.92001 0.92436 0.91587 0.91950 0.91563 0.91135 0.91727 0.92775 0.88906 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.90 36.01 0.36 -0.93 16 2 C 0.15 1.97 7.29 -81.60 -0.60 1.38 16 3 N -0.45 -4.99 7.28 33.86 0.25 -4.75 16 4 H 0.45 3.11 8.96 -182.73 -1.64 1.47 16 5 N -0.28 -3.89 12.64 33.18 0.42 -3.47 16 6 C 0.16 2.37 7.58 -16.91 -0.13 2.24 16 7 Cl 0.01 0.20 29.19 -51.86 -1.51 -1.31 16 8 C -0.25 -4.14 4.03 -105.04 -0.42 -4.56 16 9 C 0.59 11.59 7.05 -12.54 -0.09 11.50 16 10 O -0.53 -12.62 16.77 5.27 0.09 -12.53 16 11 N -0.58 -10.51 2.87 -175.31 -0.50 -11.01 16 12 C 0.11 1.65 5.00 -5.71 -0.03 1.63 16 13 C -0.15 -2.25 5.01 -28.34 -0.14 -2.39 16 14 C 0.15 2.61 4.08 -66.68 -0.27 2.33 16 15 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 16 C -0.13 -1.89 6.04 -24.97 -0.15 -2.04 16 17 C -0.12 -1.88 5.80 -26.94 -0.16 -2.04 16 18 C 0.12 2.41 1.81 -68.86 -0.12 2.28 16 19 H 0.04 0.93 2.23 -51.93 -0.12 0.82 16 20 C 0.12 2.44 6.00 -2.92 -0.02 2.42 16 21 N -0.59 -12.71 2.44 -157.29 -0.38 -13.10 16 22 C -0.23 -6.11 10.66 -15.06 -0.16 -6.28 16 23 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 24 C 0.03 0.83 5.44 -17.43 -0.09 0.74 16 25 N -0.90 -26.88 13.97 55.49 0.78 -26.10 16 26 Si 0.87 21.91 24.80 -169.99 -4.22 17.69 16 27 H -0.28 -6.95 6.79 56.52 0.38 -6.57 16 28 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.11 1.68 5.89 -51.92 -0.31 1.37 16 33 H 0.08 1.10 3.92 -51.93 -0.20 0.90 16 34 H 0.06 0.86 6.40 -51.93 -0.33 0.53 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.06 5.60 -51.93 -0.29 0.77 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.76 7.38 -51.93 -0.38 0.38 16 39 H 0.07 0.95 6.13 -51.93 -0.32 0.63 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 2.28 7.53 -51.92 -0.39 1.89 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -33.30 344.04 -8.44 -41.74 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.51 Total: 1.37 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -2.03 Total: 6.28 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.55 Total: -58.43 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.22 Total: 17.69 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -1.51 Total: -1.31 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.30 -8.44 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045793276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.165 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds