Wall clock time and date at job start Tue Mar 31 2020 21:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 110.64210 * 2 1 4 4 C 1.34776 * 120.00246 * 300.70722 * 3 2 1 5 5 O 1.21574 * 120.00393 * 359.97438 * 4 3 2 6 6 C 1.47670 * 119.99882 * 180.02562 * 4 3 2 7 7 N 1.31821 * 126.46282 * 0.02562 * 6 4 3 8 8 N 1.28475 * 110.13468 * 179.70376 * 7 6 4 9 9 H 0.96998 * 124.93394 * 180.28944 * 8 7 6 10 10 C 1.35643 * 110.13063 * 0.45717 * 8 7 6 11 11 C 1.50692 * 126.43029 * 179.81339 * 10 8 7 12 12 C 1.53000 * 117.50104 * 59.69309 * 11 10 8 13 13 C 1.53002 * 60.02940 * 252.47218 * 12 11 10 14 14 C 1.35459 * 107.13020 * 359.55580 * 10 8 7 15 15 Cl 1.73600 * 127.23719 * 180.26301 * 14 10 8 16 16 C 1.55147 * 110.72088 * 123.14713 * 2 1 3 17 17 C 1.55385 * 101.36950 * 153.94459 * 16 2 1 18 18 N 1.47432 * 104.87233 * 323.01818 * 17 16 2 19 19 C 1.36935 * 125.64537 * 204.09750 * 18 17 16 20 20 H 1.07998 * 119.99570 * 180.02562 * 19 18 17 21 21 C 1.38808 * 120.00397 * 0.03461 * 19 18 17 22 22 N 1.31621 * 120.00007 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00184 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46995 * 90.00519 * 23 21 19 25 25 H 1.48496 * 109.47184 * 210.00153 * 23 21 19 26 26 H 1.48495 * 109.47218 * 330.00521 * 23 21 19 27 27 C 1.47019 * 108.70141 * 24.13111 * 18 17 16 28 28 H 1.09004 * 109.47318 * 59.29046 * 1 2 3 29 29 H 1.09000 * 109.47172 * 179.29745 * 1 2 3 30 30 H 1.09000 * 109.47074 * 299.29444 * 1 2 3 31 31 H 0.97001 * 119.99961 * 120.69587 * 3 2 1 32 32 H 1.09008 * 115.54779 * 205.35923 * 11 10 8 33 33 H 1.09002 * 117.49833 * 359.97323 * 12 11 10 34 34 H 1.09002 * 117.49953 * 144.97364 * 12 11 10 35 35 H 1.09000 * 117.49996 * 107.50493 * 13 12 11 36 36 H 1.08999 * 117.49664 * 252.51862 * 13 12 11 37 37 H 1.09007 * 111.00474 * 272.11480 * 16 2 1 38 38 H 1.09003 * 111.00763 * 35.96340 * 16 2 1 39 39 H 1.08997 * 110.34842 * 204.16341 * 17 16 2 40 40 H 1.09009 * 110.44196 * 81.91342 * 17 16 2 41 41 H 0.97002 * 120.00332 * 179.97438 * 22 21 19 42 42 H 1.09002 * 109.88085 * 239.52425 * 27 18 17 43 43 H 1.08991 * 110.01255 * 118.43440 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7263 2.2117 -1.0035 5 8 1.0093 1.8324 -1.9091 6 6 2.2474 3.5934 -1.0037 7 7 3.0310 4.1353 -0.0927 8 7 3.2983 5.3521 -0.4065 9 1 3.8599 5.9490 0.1124 10 6 2.6780 5.6821 -1.5668 11 6 2.7376 7.0159 -2.2655 12 6 4.1131 7.5237 -2.7027 13 6 3.3980 8.1772 -1.5184 14 6 1.9998 4.5856 -1.9824 15 17 1.0310 4.4300 -3.4145 16 6 2.0789 -0.7935 1.2150 17 6 3.4673 -1.2456 0.6836 18 7 3.2470 -1.5461 -0.7429 19 6 4.0076 -2.3900 -1.5074 20 1 3.7632 -2.5437 -2.5480 21 6 5.0926 -3.0481 -0.9448 22 7 5.3901 -2.8614 0.3237 23 14 6.1305 -4.1987 -1.9879 24 1 7.2372 -3.4339 -2.6167 25 1 6.6951 -5.2711 -1.1297 26 1 5.2845 -4.8059 -3.0465 27 6 2.0760 -0.7890 -1.2087 28 1 -0.3634 0.5248 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5028 0.8962 31 1 2.6187 1.6736 0.7224 32 1 1.8878 7.2487 -2.9073 33 1 4.9750 6.8931 -2.4845 34 1 4.1683 8.0903 -3.6322 35 1 3.7895 7.9767 -0.5211 36 1 2.9825 9.1736 -1.6689 37 1 2.1821 -0.1491 2.0881 38 1 1.4469 -1.6530 1.4382 39 1 3.8031 -2.1379 1.2118 40 1 4.1969 -0.4432 0.7939 41 1 6.1480 -3.3215 0.7170 42 1 1.3140 -1.4752 -1.5782 43 1 2.3685 -0.0992 -2.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046445085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:17 Heat of formation + Delta-G solvation = 68.692769 kcal Electronic energy + Delta-G solvation = -27219.425952 eV Core-core repulsion = 23328.089641 eV Total energy + Delta-G solvation = -3891.336311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.95033 -41.13470 -38.82516 -38.15376 -37.50805 -35.73011 -33.83928 -32.85561 -31.85439 -31.23795 -30.30860 -27.53892 -25.92926 -25.18959 -24.33607 -23.29552 -22.30924 -22.21185 -21.33681 -20.38403 -18.98258 -18.95279 -17.97509 -17.20340 -17.12396 -16.74965 -16.55359 -15.83395 -15.75660 -15.53767 -15.44745 -15.03530 -14.60603 -14.25641 -14.03059 -13.59017 -13.53287 -13.29312 -13.15537 -13.10335 -12.84259 -12.76064 -12.51899 -12.46254 -12.09966 -12.04339 -12.00711 -11.95971 -11.78896 -11.68280 -11.55384 -11.42857 -10.81241 -10.74842 -10.50233 -10.01222 -9.75429 -8.88010 -7.77967 -5.21538 0.31345 0.64070 0.97874 1.44816 1.46637 1.55858 1.77868 2.12763 2.27321 2.48828 2.85786 3.20690 3.31566 3.36322 3.62051 3.64254 3.71906 3.93813 4.00001 4.02263 4.05152 4.18385 4.46717 4.62638 4.66241 4.69040 4.73506 4.82159 4.87548 4.92309 4.97816 5.04077 5.06075 5.10640 5.17971 5.36155 5.43480 5.60631 5.66064 5.80479 5.81596 6.31221 6.41453 6.66313 7.11190 7.19107 7.77540 8.41627 9.23522 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.003080 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.077305 B = 9088.954573 C = 9636.493979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.170 3.830 3 N -0.690 5.690 4 C 0.595 3.405 5 O -0.541 6.541 6 C -0.016 4.016 7 N -0.245 5.245 8 N -0.354 5.354 9 H 0.466 0.534 10 C 0.084 3.916 11 C -0.114 4.114 12 C -0.161 4.161 13 C -0.152 4.152 14 C -0.124 4.124 15 Cl -0.014 7.014 16 C -0.127 4.127 17 C 0.156 3.844 18 N -0.623 5.623 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.062 4.062 22 N -0.944 5.944 23 Si 0.979 3.021 24 H -0.289 1.289 25 H -0.287 1.287 26 H -0.273 1.273 27 C 0.137 3.863 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.409 0.591 32 H 0.139 0.861 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.078 0.922 40 H -0.012 1.012 41 H 0.248 0.752 42 H 0.027 0.973 43 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.277 25.345 1.090 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.084 3.916 3 N -0.342 5.342 4 C 0.379 3.621 5 O -0.416 6.416 6 C -0.177 4.177 7 N -0.082 5.082 8 N -0.073 5.073 9 H 0.317 0.683 10 C -0.043 4.043 11 C -0.133 4.133 12 C -0.199 4.199 13 C -0.189 4.189 14 C -0.161 4.161 15 Cl 0.015 6.985 16 C -0.166 4.166 17 C 0.032 3.968 18 N -0.349 5.349 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.255 4.255 22 N -0.594 5.594 23 Si 0.807 3.193 24 H -0.216 1.216 25 H -0.213 1.213 26 H -0.198 1.198 27 C 0.011 3.989 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.245 0.755 32 H 0.156 0.844 33 H 0.111 0.889 34 H 0.139 0.861 35 H 0.124 0.876 36 H 0.145 0.855 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.006 0.994 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -6.192 24.609 1.336 25.411 hybrid contribution 0.904 -0.359 -0.984 1.384 sum -5.288 24.250 0.352 24.822 Atomic orbital electron populations 1.21977 0.91772 1.03071 1.03125 1.21247 0.94598 0.80100 0.95703 1.45762 1.51392 1.11526 1.25485 1.17018 0.80142 0.82833 0.82081 1.90772 1.38060 1.76521 1.36256 1.21791 1.04040 0.96237 0.95637 1.73627 1.15660 0.95206 1.23673 1.43212 1.37123 1.08926 1.18020 0.68338 1.20478 0.97642 0.96452 0.89741 1.20645 1.00577 0.87565 1.04538 1.23218 0.92982 1.02785 1.00919 1.23235 1.01602 0.97037 0.97021 1.20565 1.06155 0.94480 0.94889 1.98343 1.68500 1.97791 1.33910 1.23290 0.97575 0.99735 0.95970 1.21826 0.92170 0.98568 0.84262 1.44779 1.31174 1.50509 1.08423 1.19381 1.06934 1.17448 0.93250 0.91174 1.25565 0.99848 1.02327 0.97772 1.70017 1.30100 1.47184 1.12107 0.85070 0.78446 0.78152 0.77608 1.21591 1.21303 1.19766 1.21670 0.89154 0.92738 0.95339 0.91992 0.90848 0.90486 0.75461 0.84354 0.88868 0.86089 0.87584 0.85467 0.88321 0.89297 0.90437 0.99374 0.94193 0.95509 0.97495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 8.41 71.98 0.61 -3.82 16 2 C 0.17 6.29 0.80 4.79 0.00 6.30 16 3 N -0.69 -24.13 5.14 -420.56 -2.16 -26.29 16 4 C 0.59 21.80 7.04 86.73 0.61 22.41 16 5 O -0.54 -22.32 12.82 -3.95 -0.05 -22.37 16 6 C -0.02 -0.50 7.13 42.45 0.30 -0.20 16 7 N -0.25 -6.33 11.91 -48.17 -0.57 -6.90 16 8 N -0.35 -6.22 6.77 -47.56 -0.32 -6.54 16 9 H 0.47 4.14 7.95 -219.99 -1.75 2.39 16 10 C 0.08 1.62 6.75 41.32 0.28 1.90 16 11 C -0.11 -1.34 6.13 -11.52 -0.07 -1.41 16 12 C -0.16 -1.35 10.23 30.60 0.31 -1.04 16 13 C -0.15 -0.80 10.15 30.62 0.31 -0.49 16 14 C -0.12 -3.39 6.79 22.44 0.15 -3.24 16 15 Cl -0.01 -0.39 28.02 -2.72 -0.08 -0.47 16 16 C -0.13 -4.63 6.11 32.15 0.20 -4.43 16 17 C 0.16 7.78 5.88 87.02 0.51 8.29 16 18 N -0.62 -34.12 3.40 -691.02 -2.35 -36.47 16 19 C -0.24 -14.37 10.27 84.03 0.86 -13.51 16 20 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 21 C -0.06 -3.66 5.49 84.86 0.47 -3.19 16 22 N -0.94 -56.83 10.09 21.65 0.22 -56.61 16 23 Si 0.98 47.28 29.55 68.60 2.03 49.31 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 26 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 27 C 0.14 6.51 6.16 86.73 0.53 7.05 16 28 H 0.06 2.14 6.20 -2.39 -0.01 2.13 16 29 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.41 13.05 8.20 -92.71 -0.76 12.29 16 32 H 0.14 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.11 0.28 7.17 -2.39 -0.02 0.26 16 36 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.10 2.92 8.06 -2.38 -0.02 2.90 16 38 H 0.09 3.08 8.05 -2.39 -0.02 3.06 16 39 H 0.08 4.34 5.87 -2.39 -0.01 4.33 16 40 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 41 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.03 1.28 7.80 -2.39 -0.02 1.26 16 43 H 0.01 0.37 6.67 -2.39 -0.02 0.35 16 Total: -1.00 -76.37 365.43 0.36 -76.02 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -1.44 Total: 15.71 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 5.08 Total: 14.61 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -5.19 Total: -132.80 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.05 Total: -22.37 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -76.37 0.36 -76.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046445085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.711 kcal (2) G-P(sol) polarization free energy of solvation -76.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds