Wall clock time and date at job start Tue Mar 31 2020 20:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.36359 * 125.84684 * 91.82131 * 3 2 1 5 5 C 1.41423 * 107.01620 * 180.13295 * 4 3 2 6 6 C 1.47371 * 126.46576 * 179.89850 * 5 4 3 7 7 O 1.21612 * 120.00649 * 359.70893 * 6 5 4 8 8 N 1.34780 * 119.99938 * 179.71129 * 6 5 4 9 9 C 1.46500 * 120.00006 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46870 * 179.97438 * 9 8 6 11 11 H 1.09004 * 109.50210 * 54.93507 * 10 9 8 12 12 C 1.52762 * 109.56800 * 294.96286 * 10 9 8 13 13 N 1.46930 * 109.01167 * 185.55383 * 12 10 9 14 14 C 1.36937 * 120.62860 * 233.59016 * 13 12 10 15 15 H 1.07999 * 120.00134 * 27.39734 * 14 13 12 16 16 C 1.38817 * 119.99384 * 207.68283 * 14 13 12 17 17 N 1.31616 * 120.00301 * 16.96063 * 16 14 13 18 18 Si 1.86803 * 119.99589 * 196.96318 * 16 14 13 19 19 H 1.48492 * 109.47366 * 89.99925 * 18 16 14 20 20 H 1.48501 * 109.46672 * 210.00022 * 18 16 14 21 21 H 1.48498 * 109.46831 * 329.99656 * 18 16 14 22 22 C 1.46918 * 118.73744 * 53.31103 * 13 12 10 23 23 C 1.53198 * 108.77782 * 306.64230 * 22 13 12 24 24 C 1.53045 * 109.30976 * 54.63690 * 23 22 13 25 25 F 1.39902 * 109.46172 * 58.65492 * 24 23 22 26 26 F 1.39900 * 109.46028 * 178.62943 * 24 23 22 27 27 C 1.38123 * 107.06330 * 359.63370 * 5 4 3 28 28 N 1.34429 * 108.38868 * 0.22336 * 27 5 4 29 29 H 0.96994 * 125.39156 * 180.02562 * 28 27 5 30 30 H 1.08003 * 126.49138 * 359.97438 * 4 3 2 31 31 H 0.97006 * 119.99859 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.47390 * 59.99925 * 9 8 6 33 33 H 1.08999 * 109.47005 * 299.99433 * 9 8 6 34 34 H 1.09003 * 109.50535 * 65.67106 * 12 10 9 35 35 H 1.08996 * 109.43027 * 305.39406 * 12 10 9 36 36 H 0.96990 * 119.99972 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.58724 * 66.42932 * 22 13 12 38 38 H 1.08998 * 109.58885 * 186.85881 * 22 13 12 39 39 H 1.08996 * 109.49945 * 174.58513 * 23 22 13 40 40 H 1.08994 * 109.49689 * 294.68744 * 23 22 13 41 41 H 1.08005 * 125.80604 * 180.19583 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3665 0.0361 -1.1047 5 6 4.7051 0.0191 -0.6486 6 6 5.9166 0.0431 -1.4873 7 8 5.8170 0.0760 -2.6989 8 7 7.1352 0.0284 -0.9116 9 6 8.3395 0.0516 -1.7454 10 6 9.5800 0.0290 -0.8501 11 1 9.5303 -0.8301 -0.1810 12 6 9.6381 1.3125 -0.0237 13 7 10.8986 1.3394 0.7308 14 6 10.8957 1.5234 2.0877 15 1 10.0403 1.2186 2.6722 16 6 11.9901 2.1071 2.7112 17 7 12.8708 2.7797 2.0010 18 14 12.2126 1.9381 4.5582 19 1 13.0094 0.7198 4.8513 20 1 12.9229 3.1322 5.0824 21 1 10.8824 1.8280 5.2090 22 6 12.1617 1.1590 0.0024 23 6 12.0752 -0.1283 -0.8235 24 6 10.8356 -0.0725 -1.7193 25 9 10.9150 1.0460 -2.5559 26 9 10.7705 -1.2331 -2.4979 27 6 4.6625 -0.0182 0.7315 28 7 3.3744 -0.0291 1.1159 29 1 3.0623 -0.0536 2.0339 30 1 3.0388 0.0683 -2.1334 31 1 7.2147 0.0024 0.0548 32 1 8.3451 0.9582 -2.3505 33 1 8.3463 -0.8211 -2.3983 34 1 8.7969 1.3376 0.6691 35 1 9.5919 2.1745 -0.6891 36 1 13.6352 3.1878 2.4368 37 1 12.3256 2.0084 -0.6608 38 1 12.9853 1.0829 0.7124 39 1 12.9673 -0.2242 -1.4425 40 1 12.0022 -0.9856 -0.1544 41 1 5.5185 -0.0360 1.3898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046930707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:07 Heat of formation + Delta-G solvation = -41.206547 kcal Electronic energy + Delta-G solvation = -28929.196728 eV Core-core repulsion = 24481.298145 eV Total energy + Delta-G solvation = -4447.898584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.53451 -46.48612 -41.86965 -39.27335 -37.36664 -36.83285 -34.98388 -32.79471 -31.91862 -31.03695 -30.33423 -29.83229 -25.94436 -25.21692 -23.29059 -22.91209 -22.30159 -21.33095 -20.44396 -19.92187 -19.41960 -17.26620 -16.83680 -16.72325 -16.31401 -16.08527 -15.64196 -15.45526 -15.22961 -15.13803 -14.73435 -14.51912 -14.05730 -13.86216 -13.59987 -13.42581 -13.36455 -13.27237 -13.13059 -12.94168 -12.80732 -12.77609 -12.64613 -12.22570 -11.71204 -11.62717 -11.56933 -11.27568 -10.89533 -10.65093 -10.56078 -10.12300 -10.06624 -9.95617 -9.67754 -9.56993 -9.02965 -8.75998 -8.66186 -6.94956 -5.98432 -3.43242 0.95779 1.53201 1.86102 2.73255 2.99486 3.11474 3.25302 3.31898 3.34634 3.44123 3.64762 4.19707 4.32660 4.50153 4.55026 4.61900 4.66837 4.86044 4.88452 5.16041 5.23947 5.31794 5.39998 5.52091 5.55492 5.64470 5.90780 5.99977 6.06666 6.13549 6.19337 6.24024 6.28744 6.40149 6.42024 6.66459 6.69058 7.02711 7.07126 7.41818 7.54310 7.59356 8.21857 8.28109 8.97874 9.60662 10.15983 11.10703 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.011143 B = 0.003082 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.099013 B = 9082.248987 C =11213.671986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.281 3.719 3 C 0.040 3.960 4 C -0.046 4.046 5 C -0.222 4.222 6 C 0.588 3.412 7 O -0.541 6.541 8 N -0.720 5.720 9 C 0.127 3.873 10 C -0.155 4.155 11 H 0.102 0.898 12 C 0.153 3.847 13 N -0.590 5.590 14 C -0.262 4.262 15 H 0.069 0.931 16 C 0.007 3.993 17 N -0.898 5.898 18 Si 0.905 3.095 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.170 3.830 23 C -0.179 4.179 24 C 0.300 3.700 25 F -0.199 7.199 26 F -0.213 7.213 27 C 0.088 3.912 28 N -0.519 5.519 29 H 0.427 0.573 30 H 0.161 0.839 31 H 0.400 0.600 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.257 0.743 37 H 0.033 0.967 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.461 -7.134 -1.023 13.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.035 4.035 3 C -0.071 4.071 4 C -0.075 4.075 5 C -0.231 4.231 6 C 0.375 3.625 7 O -0.419 6.419 8 N -0.372 5.372 9 C 0.002 3.998 10 C -0.177 4.177 11 H 0.120 0.880 12 C 0.026 3.974 13 N -0.312 5.312 14 C -0.391 4.391 15 H 0.087 0.913 16 C -0.193 4.193 17 N -0.541 5.541 18 Si 0.735 3.265 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.044 3.956 23 C -0.219 4.219 24 C 0.263 3.737 25 F -0.180 7.180 26 F -0.194 7.194 27 C -0.054 4.054 28 N -0.113 5.113 29 H 0.266 0.734 30 H 0.178 0.822 31 H 0.235 0.765 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -13.218 -6.990 -1.715 15.050 hybrid contribution 0.650 -0.105 1.720 1.842 sum -12.568 -7.095 0.005 14.432 Atomic orbital electron populations 1.81335 1.11268 1.10415 1.05320 1.24280 0.90795 0.93339 0.95060 1.15158 0.83303 1.21144 0.87506 1.21101 0.90333 0.98150 0.97883 1.19638 0.93968 1.17370 0.92172 1.17281 0.82082 0.76011 0.87108 1.90798 1.86827 1.50298 1.14000 1.45755 1.05292 1.75660 1.10455 1.21318 0.82241 1.03224 0.92968 1.22894 0.91783 1.05071 0.97914 0.88019 1.20827 0.91041 0.91761 0.93786 1.44077 0.99566 1.83495 1.04089 1.19139 1.03782 1.34543 0.81644 0.91296 1.25089 0.99307 0.96796 0.98089 1.70010 1.14544 1.34557 1.35008 0.86257 0.77949 0.77296 0.84987 1.21309 1.21686 1.20397 1.20847 0.90841 0.89934 0.94012 1.23273 0.94543 1.05156 0.98923 1.21025 0.98805 0.70947 0.82884 1.92971 1.97474 1.53274 1.74263 1.92960 1.97600 1.50750 1.78107 1.22616 0.86370 1.00794 0.95670 1.41574 1.05681 1.55355 1.08648 0.73417 0.82152 0.76474 0.90535 0.90892 0.91660 0.94907 0.93284 0.94932 0.88152 0.90560 0.89591 0.79280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.52 18.54 41.84 0.78 -3.75 16 2 C 0.28 2.49 15.88 -22.47 -0.36 2.13 16 3 C 0.04 0.30 6.90 -83.98 -0.58 -0.28 16 4 C -0.05 -0.41 10.59 -39.05 -0.41 -0.83 16 5 C -0.22 -2.04 6.13 -105.01 -0.64 -2.69 16 6 C 0.59 7.35 7.81 -12.54 -0.10 7.26 16 7 O -0.54 -8.98 16.92 5.27 0.09 -8.89 16 8 N -0.72 -8.13 5.32 -61.40 -0.33 -8.45 16 9 C 0.13 1.75 4.83 -4.04 -0.02 1.73 16 10 C -0.16 -2.31 2.02 -90.72 -0.18 -2.50 16 11 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 12 C 0.15 2.69 5.38 -3.93 -0.02 2.67 16 13 N -0.59 -12.88 3.00 -172.58 -0.52 -13.40 16 14 C -0.26 -6.28 9.58 -15.06 -0.14 -6.42 16 15 H 0.07 1.57 7.88 -52.49 -0.41 1.15 16 16 C 0.01 0.17 4.92 -17.43 -0.09 0.09 16 17 N -0.90 -23.99 11.18 55.49 0.62 -23.37 16 18 Si 0.91 19.66 29.59 -169.99 -5.03 14.63 16 19 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 C 0.17 3.64 5.10 -3.71 -0.02 3.63 16 23 C -0.18 -3.11 5.62 -26.61 -0.15 -3.26 16 24 C 0.30 5.01 1.63 -26.68 -0.04 4.97 16 25 F -0.20 -3.65 15.73 2.25 0.04 -3.62 16 26 F -0.21 -3.50 16.40 2.25 0.04 -3.47 16 27 C 0.09 0.49 11.43 -16.46 -0.19 0.30 16 28 N -0.52 -2.49 6.02 -10.29 -0.06 -2.55 16 29 H 0.43 0.77 8.96 -40.82 -0.37 0.41 16 30 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 31 H 0.40 3.47 6.60 -40.82 -0.27 3.20 16 32 H 0.08 1.17 7.97 -51.93 -0.41 0.76 16 33 H 0.07 1.05 7.63 -51.93 -0.40 0.66 16 34 H 0.06 1.02 7.13 -51.93 -0.37 0.65 16 35 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 36 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.03 0.76 7.92 -51.93 -0.41 0.35 16 38 H 0.10 2.40 6.04 -51.93 -0.31 2.09 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.19 0.48 7.44 -52.48 -0.39 0.09 16 LS Contribution 358.14 15.07 5.40 5.40 Total: -1.00 -31.85 358.14 -6.51 -38.36 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.58 Total: 2.29 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -2.95 Total: 6.81 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.49 Total: -51.52 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.07 Total: -7.08 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.85 -6.51 -38.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046930707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.843 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds