Wall clock time and date at job start Tue Mar 31 2020 20:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36354 * 125.84513 * 205.17019 * 3 2 1 5 5 C 1.41431 * 107.01416 * 179.97438 * 4 3 2 6 6 C 1.47370 * 126.46361 * 179.97438 * 5 4 3 7 7 O 1.21610 * 120.00494 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99799 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99995 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47069 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.49550 * 305.06486 * 10 9 8 12 12 C 1.53621 * 109.45810 * 65.27094 * 10 9 8 13 13 N 1.46927 * 108.54388 * 174.74089 * 12 10 9 14 14 C 1.36934 * 120.63082 * 126.36590 * 13 12 10 15 15 H 1.07997 * 120.00180 * 331.76631 * 14 13 12 16 16 C 1.38806 * 119.99847 * 151.48870 * 14 13 12 17 17 N 1.31623 * 120.00305 * 342.89029 * 16 14 13 18 18 Si 1.86804 * 120.00174 * 162.88963 * 16 14 13 19 19 H 1.48500 * 109.47015 * 94.07903 * 18 16 14 20 20 H 1.48497 * 109.47296 * 214.08235 * 18 16 14 21 21 H 1.48500 * 109.46610 * 334.08191 * 18 16 14 22 22 C 1.46924 * 118.73892 * 306.09631 * 13 12 10 23 23 C 1.53190 * 108.77602 * 53.85755 * 22 13 12 24 24 C 1.53041 * 109.31438 * 305.36257 * 23 22 13 25 25 F 1.39894 * 109.46107 * 181.38365 * 24 23 22 26 26 F 1.39896 * 109.46081 * 301.36128 * 24 23 22 27 27 C 1.38123 * 107.06045 * 0.24099 * 5 4 3 28 28 N 1.34422 * 108.39143 * 359.60449 * 27 5 4 29 29 H 0.97002 * 125.39216 * 180.15972 * 28 27 5 30 30 H 1.07999 * 126.48899 * 359.97438 * 4 3 2 31 31 H 0.97000 * 119.99590 * 0.02562 * 8 6 5 32 32 H 1.08994 * 109.47667 * 59.99979 * 9 8 6 33 33 H 1.09005 * 109.47307 * 299.99709 * 9 8 6 34 34 H 1.09004 * 109.74173 * 55.00590 * 12 10 9 35 35 H 1.09004 * 109.66565 * 294.43458 * 12 10 9 36 36 H 0.97003 * 120.00291 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.58704 * 173.64511 * 22 13 12 38 38 H 1.09004 * 109.58762 * 293.93248 * 22 13 12 39 39 H 1.08992 * 109.50091 * 65.31745 * 23 22 13 40 40 H 1.09005 * 109.50026 * 185.38584 * 23 22 13 41 41 H 1.08005 * 125.80132 * 179.75645 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3660 1.0013 0.4701 5 6 4.7048 0.5885 0.2765 6 6 5.9160 1.3486 0.6331 7 8 5.8158 2.4456 1.1482 8 7 7.1348 0.8278 0.3882 9 6 8.3388 1.5831 0.7432 10 6 9.5797 0.7733 0.3618 11 1 9.5296 -0.2105 0.8284 12 6 9.6399 0.6179 -1.1653 13 7 10.9000 -0.0505 -1.5177 14 6 10.8979 -1.1797 -2.2923 15 1 10.0444 -1.8413 -2.2802 16 6 11.9904 -1.4709 -3.0975 17 7 12.8660 -0.5309 -3.3840 18 14 12.2180 -3.1970 -3.7747 19 1 11.6201 -3.2792 -5.1315 20 1 13.6673 -3.5111 -3.8525 21 1 11.5474 -4.1727 -2.8782 22 6 12.1627 0.5190 -1.0280 23 6 12.0746 0.6788 0.4930 24 6 10.8348 1.5043 0.8442 25 9 10.7685 1.6788 2.2307 26 9 10.9148 2.7540 0.2204 27 6 4.6627 -0.6588 -0.3154 28 7 3.3748 -1.0095 -0.4743 29 1 3.0630 -1.8410 -0.8647 30 1 3.0378 1.9327 0.9074 31 1 7.2146 -0.0471 -0.0230 32 1 8.3448 1.7741 1.8163 33 1 8.3447 2.5312 0.2054 34 1 9.6028 1.5998 -1.6371 35 1 8.7985 0.0145 -1.5061 36 1 13.6293 -0.7343 -3.9470 37 1 12.9864 -0.1496 -1.2781 38 1 12.3284 1.4920 -1.4907 39 1 12.0011 -0.3041 0.9584 40 1 12.9666 1.1882 0.8576 41 1 5.5190 -1.2524 -0.5997 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046930708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:11 Heat of formation + Delta-G solvation = -41.299684 kcal Electronic energy + Delta-G solvation = -28925.981343 eV Core-core repulsion = 24478.078720 eV Total energy + Delta-G solvation = -4447.902622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.130 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.53174 -46.48425 -41.86841 -39.26423 -37.33089 -36.83321 -34.97691 -32.78304 -31.91681 -31.02284 -30.33235 -29.82506 -25.93320 -25.21375 -23.28859 -22.91054 -22.28770 -21.32511 -20.44287 -19.92284 -19.42058 -17.25936 -16.83459 -16.72325 -16.31101 -16.07616 -15.63867 -15.45203 -15.22077 -15.13225 -14.73353 -14.51765 -14.05352 -13.85748 -13.60175 -13.42405 -13.36448 -13.27070 -13.12218 -12.93992 -12.80606 -12.77981 -12.64426 -12.22426 -11.69895 -11.60775 -11.56601 -11.28399 -10.86682 -10.65880 -10.58798 -10.12556 -10.06701 -9.94985 -9.67762 -9.56837 -9.02617 -8.75834 -8.65888 -6.93874 -5.98704 -3.43632 0.95928 1.53373 1.86258 2.73328 2.99614 3.11861 3.24807 3.32833 3.34149 3.44335 3.64926 4.20526 4.32857 4.50317 4.55308 4.62432 4.67576 4.86246 4.88471 5.16752 5.23913 5.32069 5.39950 5.52192 5.55622 5.63868 5.91121 5.99931 6.06869 6.13539 6.19470 6.24132 6.29376 6.40280 6.42480 6.66815 6.69204 7.02798 7.06545 7.41544 7.54710 7.59470 8.22011 8.28425 8.97721 9.60626 10.16328 11.10311 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.003082 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.818830 B = 9083.172592 C =11213.950333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.281 3.719 3 C 0.040 3.960 4 C -0.046 4.046 5 C -0.222 4.222 6 C 0.588 3.412 7 O -0.542 6.542 8 N -0.720 5.720 9 C 0.126 3.874 10 C -0.155 4.155 11 H 0.102 0.898 12 C 0.153 3.847 13 N -0.590 5.590 14 C -0.262 4.262 15 H 0.069 0.931 16 C 0.007 3.993 17 N -0.898 5.898 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.278 1.278 22 C 0.170 3.830 23 C -0.178 4.178 24 C 0.300 3.700 25 F -0.213 7.213 26 F -0.199 7.199 27 C 0.088 3.912 28 N -0.519 5.519 29 H 0.427 0.573 30 H 0.161 0.839 31 H 0.400 0.600 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.065 0.935 36 H 0.257 0.743 37 H 0.099 0.901 38 H 0.033 0.967 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.418 -2.313 6.826 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.035 4.035 3 C -0.071 4.071 4 C -0.075 4.075 5 C -0.232 4.232 6 C 0.375 3.625 7 O -0.419 6.419 8 N -0.371 5.371 9 C 0.002 3.998 10 C -0.177 4.177 11 H 0.120 0.880 12 C 0.026 3.974 13 N -0.312 5.312 14 C -0.391 4.391 15 H 0.086 0.914 16 C -0.192 4.192 17 N -0.541 5.541 18 Si 0.733 3.267 19 H -0.213 1.213 20 H -0.215 1.215 21 H -0.203 1.203 22 C 0.044 3.956 23 C -0.218 4.218 24 C 0.263 3.737 25 F -0.194 7.194 26 F -0.180 7.180 27 C -0.054 4.054 28 N -0.113 5.113 29 H 0.266 0.734 30 H 0.178 0.822 31 H 0.235 0.765 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.051 0.949 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -13.165 -1.637 7.025 15.012 hybrid contribution 0.653 -1.568 -0.710 1.841 sum -12.512 -3.205 6.315 14.378 Atomic orbital electron populations 1.81332 1.11273 1.06233 1.09503 1.24278 0.90796 0.94752 0.93646 1.15158 0.83298 0.93536 1.15122 1.21101 0.90340 0.97889 0.98140 1.19640 0.93969 0.96775 1.12767 1.17282 0.82083 0.85104 0.78019 1.90798 1.86822 1.20499 1.43813 1.45751 1.05288 1.22236 1.63870 1.21319 0.82285 0.95155 1.01019 1.23054 0.91698 1.00001 1.02944 0.87994 1.21003 0.91062 0.97183 0.88147 1.44106 0.99676 1.29163 1.58274 1.19112 1.03975 0.97683 1.18372 0.91358 1.25099 0.99348 0.97821 0.96982 1.70019 1.14818 1.30903 1.38341 0.86278 0.77341 0.84194 0.78874 1.21348 1.21461 1.20328 1.20827 0.90802 0.98842 0.85143 1.23262 0.94540 0.99881 1.04154 1.21021 0.98818 0.80869 0.72948 1.92958 1.97596 1.96093 1.32782 1.92969 1.97472 1.45163 1.82392 1.22615 0.86380 0.96649 0.99804 1.41574 1.05678 1.17043 1.46964 0.73416 0.82155 0.76475 0.90923 0.90554 0.94839 0.91635 0.93299 0.88258 0.94925 0.89580 0.90573 0.79276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.52 18.54 41.84 0.78 -3.75 16 2 C 0.28 2.49 15.88 -22.47 -0.36 2.13 16 3 C 0.04 0.30 6.90 -83.98 -0.58 -0.28 16 4 C -0.05 -0.41 10.59 -39.05 -0.41 -0.83 16 5 C -0.22 -2.05 6.13 -105.01 -0.64 -2.69 16 6 C 0.59 7.36 7.81 -12.54 -0.10 7.26 16 7 O -0.54 -8.99 16.92 5.27 0.09 -8.90 16 8 N -0.72 -8.13 5.32 -61.40 -0.33 -8.46 16 9 C 0.13 1.75 4.83 -4.04 -0.02 1.73 16 10 C -0.16 -2.32 2.04 -90.27 -0.18 -2.50 16 11 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 12 C 0.15 2.70 5.42 -3.49 -0.02 2.68 16 13 N -0.59 -12.87 2.99 -172.06 -0.51 -13.38 16 14 C -0.26 -6.28 9.58 -15.06 -0.14 -6.43 16 15 H 0.07 1.55 7.89 -52.49 -0.41 1.14 16 16 C 0.01 0.18 4.91 -17.43 -0.09 0.09 16 17 N -0.90 -23.97 11.21 55.49 0.62 -23.35 16 18 Si 0.90 19.61 29.59 -169.99 -5.03 14.58 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 C 0.17 3.64 5.09 -3.71 -0.02 3.63 16 23 C -0.18 -3.09 5.62 -26.61 -0.15 -3.24 16 24 C 0.30 5.02 1.63 -26.69 -0.04 4.97 16 25 F -0.21 -3.51 16.40 2.25 0.04 -3.47 16 26 F -0.20 -3.65 15.73 2.25 0.04 -3.62 16 27 C 0.09 0.49 11.43 -16.46 -0.19 0.30 16 28 N -0.52 -2.49 6.02 -10.29 -0.06 -2.55 16 29 H 0.43 0.77 8.96 -40.82 -0.37 0.40 16 30 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.40 3.47 6.63 -40.82 -0.27 3.20 16 32 H 0.07 1.05 7.63 -51.93 -0.40 0.66 16 33 H 0.08 1.17 7.97 -51.93 -0.41 0.76 16 34 H 0.03 0.65 7.92 -51.93 -0.41 0.23 16 35 H 0.07 1.03 7.16 -51.93 -0.37 0.65 16 36 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 37 H 0.10 2.37 6.07 -51.93 -0.32 2.06 16 38 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 39 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.19 0.48 7.44 -52.48 -0.39 0.09 16 LS Contribution 358.30 15.07 5.40 5.40 Total: -1.00 -31.87 358.30 -6.50 -38.38 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.59 Total: 2.30 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -2.94 Total: 6.83 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 0.50 Total: -51.50 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 0.07 Total: -7.09 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.87 -6.50 -38.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046930708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.921 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds