Wall clock time and date at job start Tue Mar 31 2020 20:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36354 * 125.84513 * 205.17019 * 3 2 1 5 5 C 1.41431 * 107.01416 * 179.97438 * 4 3 2 6 6 C 1.47370 * 126.46361 * 179.97438 * 5 4 3 7 7 O 1.21610 * 120.00494 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99799 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99995 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47069 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.49550 * 305.06486 * 10 9 8 12 12 C 1.53621 * 109.45810 * 65.27094 * 10 9 8 13 13 N 1.46927 * 108.54388 * 174.74089 * 12 10 9 14 14 C 1.36934 * 120.63082 * 126.36590 * 13 12 10 15 15 H 1.07997 * 120.00180 * 331.76631 * 14 13 12 16 16 C 1.38806 * 119.99847 * 151.48870 * 14 13 12 17 17 N 1.31623 * 120.00305 * 342.89029 * 16 14 13 18 18 Si 1.86804 * 120.00174 * 162.88963 * 16 14 13 19 19 H 1.48500 * 109.47015 * 94.07903 * 18 16 14 20 20 H 1.48497 * 109.47296 * 214.08235 * 18 16 14 21 21 H 1.48500 * 109.46610 * 334.08191 * 18 16 14 22 22 C 1.46924 * 118.73892 * 306.09631 * 13 12 10 23 23 C 1.53190 * 108.77602 * 53.85755 * 22 13 12 24 24 C 1.53041 * 109.31438 * 305.36257 * 23 22 13 25 25 F 1.39894 * 109.46107 * 181.38365 * 24 23 22 26 26 F 1.39896 * 109.46081 * 301.36128 * 24 23 22 27 27 C 1.38123 * 107.06045 * 0.24099 * 5 4 3 28 28 N 1.34422 * 108.39143 * 359.60449 * 27 5 4 29 29 H 0.97002 * 125.39216 * 180.15972 * 28 27 5 30 30 H 1.07999 * 126.48899 * 359.97438 * 4 3 2 31 31 H 0.97000 * 119.99590 * 0.02562 * 8 6 5 32 32 H 1.08994 * 109.47667 * 59.99979 * 9 8 6 33 33 H 1.09005 * 109.47307 * 299.99709 * 9 8 6 34 34 H 1.09004 * 109.74173 * 55.00590 * 12 10 9 35 35 H 1.09004 * 109.66565 * 294.43458 * 12 10 9 36 36 H 0.97003 * 120.00291 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.58704 * 173.64511 * 22 13 12 38 38 H 1.09004 * 109.58762 * 293.93248 * 22 13 12 39 39 H 1.08992 * 109.50091 * 65.31745 * 23 22 13 40 40 H 1.09005 * 109.50026 * 185.38584 * 23 22 13 41 41 H 1.08005 * 125.80132 * 179.75645 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3660 1.0013 0.4701 5 6 4.7048 0.5885 0.2765 6 6 5.9160 1.3486 0.6331 7 8 5.8158 2.4456 1.1482 8 7 7.1348 0.8278 0.3882 9 6 8.3388 1.5831 0.7432 10 6 9.5797 0.7733 0.3618 11 1 9.5296 -0.2105 0.8284 12 6 9.6399 0.6179 -1.1653 13 7 10.9000 -0.0505 -1.5177 14 6 10.8979 -1.1797 -2.2923 15 1 10.0444 -1.8413 -2.2802 16 6 11.9904 -1.4709 -3.0975 17 7 12.8660 -0.5309 -3.3840 18 14 12.2180 -3.1970 -3.7747 19 1 11.6201 -3.2792 -5.1315 20 1 13.6673 -3.5111 -3.8525 21 1 11.5474 -4.1727 -2.8782 22 6 12.1627 0.5190 -1.0280 23 6 12.0746 0.6788 0.4930 24 6 10.8348 1.5043 0.8442 25 9 10.7685 1.6788 2.2307 26 9 10.9148 2.7540 0.2204 27 6 4.6627 -0.6588 -0.3154 28 7 3.3748 -1.0095 -0.4743 29 1 3.0630 -1.8410 -0.8647 30 1 3.0378 1.9327 0.9074 31 1 7.2146 -0.0471 -0.0230 32 1 8.3448 1.7741 1.8163 33 1 8.3447 2.5312 0.2054 34 1 9.6028 1.5998 -1.6371 35 1 8.7985 0.0145 -1.5061 36 1 13.6293 -0.7343 -3.9470 37 1 12.9864 -0.1496 -1.2781 38 1 12.3284 1.4920 -1.4907 39 1 12.0011 -0.3041 0.9584 40 1 12.9666 1.1882 0.8576 41 1 5.5190 -1.2524 -0.5997 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046930708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:10 Heat of formation + Delta-G solvation = -62.147054 kcal Electronic energy + Delta-G solvation = -28926.885353 eV Core-core repulsion = 24478.078720 eV Total energy + Delta-G solvation = -4448.806632 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.91337 -47.87383 -42.46270 -40.27456 -38.79243 -37.59688 -36.25302 -34.31758 -32.76893 -32.11456 -31.88326 -30.64664 -27.26001 -26.83236 -24.37651 -23.72536 -23.52617 -22.61823 -21.18581 -20.99765 -20.53132 -18.84797 -18.22789 -17.73046 -17.33107 -17.00822 -16.85940 -16.79013 -16.39929 -16.18336 -15.91406 -15.33964 -15.32655 -15.16429 -14.87070 -14.67100 -14.48114 -14.25729 -14.19164 -14.12815 -13.92794 -13.74775 -13.67629 -13.29149 -13.16963 -13.06957 -12.97953 -12.92850 -12.50675 -12.23349 -12.09740 -11.83358 -11.56201 -11.29950 -10.96685 -10.50480 -10.26427 -9.97907 -9.37167 -8.72912 -7.84242 -5.30607 0.37783 0.80721 1.23724 1.54949 1.58593 1.66442 2.10689 2.19235 2.29572 2.55596 2.61526 2.88905 3.06870 3.25879 3.31134 3.39664 3.61044 3.67397 3.87124 4.00619 4.12847 4.20067 4.27035 4.35950 4.59804 4.61862 4.66777 4.79595 4.86875 4.94123 4.97930 4.98262 5.20405 5.35552 5.40172 5.47747 5.58336 5.65913 5.73860 6.25897 6.40551 6.41722 6.69581 7.14858 7.37770 7.83704 8.36907 9.24058 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.003082 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.818830 B = 9083.172592 C =11213.950333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.304 3.696 3 C 0.039 3.961 4 C -0.057 4.057 5 C -0.255 4.255 6 C 0.588 3.412 7 O -0.592 6.592 8 N -0.708 5.708 9 C 0.137 3.863 10 C -0.137 4.137 11 H 0.125 0.875 12 C 0.154 3.846 13 N -0.605 5.605 14 C -0.257 4.257 15 H 0.088 0.912 16 C -0.050 4.050 17 N -0.938 5.938 18 Si 0.966 3.034 19 H -0.291 1.291 20 H -0.303 1.303 21 H -0.260 1.260 22 C 0.177 3.823 23 C -0.168 4.168 24 C 0.296 3.704 25 F -0.208 7.208 26 F -0.212 7.212 27 C 0.129 3.871 28 N -0.499 5.499 29 H 0.446 0.554 30 H 0.151 0.849 31 H 0.416 0.584 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.013 0.987 35 H 0.092 0.908 36 H 0.249 0.751 37 H 0.072 0.928 38 H 0.001 0.999 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.538 -4.972 7.248 15.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.011 4.011 3 C -0.073 4.073 4 C -0.085 4.085 5 C -0.264 4.264 6 C 0.378 3.622 7 O -0.474 6.474 8 N -0.360 5.360 9 C 0.012 3.988 10 C -0.158 4.158 11 H 0.143 0.857 12 C 0.028 3.972 13 N -0.327 5.327 14 C -0.387 4.387 15 H 0.106 0.894 16 C -0.246 4.246 17 N -0.584 5.584 18 Si 0.794 3.206 19 H -0.218 1.218 20 H -0.230 1.230 21 H -0.184 1.184 22 C 0.051 3.949 23 C -0.208 4.208 24 C 0.260 3.740 25 F -0.189 7.189 26 F -0.193 7.193 27 C -0.016 4.016 28 N -0.094 5.094 29 H 0.288 0.712 30 H 0.169 0.831 31 H 0.254 0.746 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.019 0.981 39 H 0.120 0.880 40 H 0.106 0.894 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -14.341 -4.349 7.450 16.735 hybrid contribution 1.005 -0.692 -0.835 1.479 sum -13.335 -5.041 6.615 15.716 Atomic orbital electron populations 1.81357 1.12522 1.07705 1.11128 1.24351 0.90861 0.93452 0.92401 1.14880 0.82520 0.94104 1.15768 1.21126 0.90869 0.98137 0.98380 1.19372 0.92458 0.98605 1.15990 1.17709 0.82972 0.84595 0.76914 1.90773 1.87495 1.22864 1.46255 1.45554 1.04205 1.22601 1.63642 1.21037 0.82799 0.94523 1.00460 1.22862 0.91211 1.00929 1.00792 0.85736 1.21102 0.90129 0.96243 0.89740 1.44351 1.00904 1.29221 1.58244 1.19612 1.03886 0.98179 1.16993 0.89430 1.25841 0.99752 1.00789 0.98197 1.70186 1.15518 1.32724 1.39943 0.85293 0.76281 0.80804 0.78177 1.21776 1.22989 1.18406 1.20532 0.90321 0.96384 0.87690 1.23086 0.95654 1.01100 1.00917 1.21132 0.99393 0.80374 0.73128 1.92967 1.97595 1.96044 1.32298 1.92952 1.97553 1.46105 1.82702 1.23104 0.87379 0.94928 0.96161 1.41574 1.05095 1.17040 1.45685 0.71169 0.83121 0.74560 0.91307 0.92495 0.96878 0.88966 0.94216 0.91006 0.98092 0.88006 0.89426 0.75242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.74 18.54 19.00 0.35 -9.38 16 2 C 0.30 5.00 15.88 88.33 1.40 6.41 16 3 C 0.04 0.49 6.90 39.03 0.27 0.76 16 4 C -0.06 -0.94 10.59 22.62 0.24 -0.70 16 5 C -0.25 -4.08 6.13 -20.11 -0.12 -4.20 16 6 C 0.59 13.84 7.81 86.65 0.68 14.51 16 7 O -0.59 -19.75 16.92 -4.06 -0.07 -19.81 16 8 N -0.71 -14.07 5.32 -466.43 -2.48 -16.55 16 9 C 0.14 3.55 4.83 86.38 0.42 3.96 16 10 C -0.14 -3.74 2.04 -10.57 -0.02 -3.76 16 11 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 12 C 0.15 5.10 5.42 86.51 0.47 5.56 16 13 N -0.60 -25.61 2.99 -698.26 -2.09 -27.69 16 14 C -0.26 -11.81 9.58 84.03 0.80 -11.01 16 15 H 0.09 3.63 7.89 -2.91 -0.02 3.61 16 16 C -0.05 -2.49 4.91 84.86 0.42 -2.08 16 17 N -0.94 -51.13 11.21 21.65 0.24 -50.88 16 18 Si 0.97 39.69 29.59 68.60 2.03 41.72 16 19 H -0.29 -12.00 7.11 99.48 0.71 -11.30 16 20 H -0.30 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 22 C 0.18 7.64 5.09 86.36 0.44 8.08 16 23 C -0.17 -5.60 5.62 30.67 0.17 -5.43 16 24 C 0.30 9.46 1.63 30.62 0.05 9.51 16 25 F -0.21 -6.41 16.40 44.97 0.74 -5.67 16 26 F -0.21 -7.76 15.73 44.97 0.71 -7.05 16 27 C 0.13 0.85 11.43 84.27 0.96 1.81 16 28 N -0.50 -2.75 6.02 -186.47 -1.12 -3.87 16 29 H 0.45 -0.48 8.96 -92.71 -0.83 -1.31 16 30 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 31 H 0.42 5.35 6.63 -92.71 -0.61 4.74 16 32 H 0.07 1.89 7.63 -2.39 -0.02 1.87 16 33 H 0.06 1.72 7.97 -2.38 -0.02 1.70 16 34 H 0.01 0.50 7.92 -2.38 -0.02 0.48 16 35 H 0.09 2.53 7.16 -2.38 -0.02 2.52 16 36 H 0.25 13.33 8.31 -92.71 -0.77 12.56 16 37 H 0.07 3.51 6.07 -2.39 -0.01 3.50 16 38 H 0.00 0.05 7.93 -2.38 -0.02 0.03 16 39 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 41 H 0.23 -0.39 7.44 -2.91 -0.02 -0.41 16 Total: -1.00 -72.01 358.30 4.16 -67.85 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -0.33 Total: 7.93 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 6.18 Total: 23.42 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -5.09 Total: -108.38 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.07 Total: -19.81 kcal Atomic # 9 Polarization: -14.17 SS G_CDS: 1.44 Total: -12.72 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -72.01 4.16 -67.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046930708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.707 kcal (2) G-P(sol) polarization free energy of solvation -72.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds