Wall clock time and date at job start Tue Mar 31 2020 20:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99759 * 2 1 4 4 H 1.48493 * 109.47156 * 274.99790 * 3 2 1 5 5 H 1.48496 * 109.47161 * 35.00053 * 3 2 1 6 6 H 1.48506 * 109.47159 * 154.99839 * 3 2 1 7 7 C 1.38813 * 120.00559 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00701 * 214.93981 * 7 2 1 9 9 N 1.36944 * 119.99503 * 34.94109 * 7 2 1 10 10 C 1.48286 * 128.20908 * 175.01996 * 9 7 2 11 11 H 1.09000 * 112.21062 * 343.89360 * 10 9 7 12 12 C 1.54613 * 104.81590 * 221.88906 * 10 9 7 13 13 C 1.55893 * 103.99166 * 334.81892 * 12 10 9 14 14 C 1.48293 * 128.20712 * 355.04229 * 9 7 2 15 15 H 1.08995 * 112.21401 * 16.71426 * 14 9 7 16 16 C 1.53704 * 107.27733 * 253.16704 * 14 9 7 17 17 C 1.54504 * 108.28579 * 295.53674 * 16 14 9 18 18 H 1.09002 * 109.35409 * 174.09490 * 17 16 14 19 19 C 1.52996 * 109.64365 * 294.03839 * 17 16 14 20 20 N 1.46505 * 109.47454 * 181.02736 * 19 17 16 21 21 C 1.34772 * 120.00179 * 179.97438 * 20 19 17 22 22 O 1.21735 * 119.99756 * 359.97438 * 21 20 19 23 23 C 1.46345 * 119.99980 * 179.97438 * 21 20 19 24 24 C 1.36735 * 125.43291 * 179.71949 * 23 21 20 25 25 C 1.37343 * 113.32699 * 179.80145 * 24 23 21 26 26 C 1.34216 * 115.04846 * 0.49125 * 25 24 23 27 27 F 1.35095 * 124.54377 * 179.69170 * 26 25 24 28 28 S 1.70615 * 110.91381 * 359.72858 * 26 25 24 29 29 C 1.53150 * 109.57008 * 54.15636 * 17 16 14 30 30 H 0.96994 * 120.00380 * 0.02562 * 1 2 3 31 31 H 1.08995 * 110.38199 * 93.42472 * 12 10 9 32 32 H 1.09000 * 110.38365 * 215.79044 * 12 10 9 33 33 H 1.09001 * 110.30028 * 241.10739 * 13 12 10 34 34 H 1.09002 * 110.32270 * 118.84876 * 13 12 10 35 35 H 1.09003 * 109.56055 * 55.81784 * 16 14 9 36 36 H 1.08992 * 109.56911 * 176.17618 * 16 14 9 37 37 H 1.09006 * 109.46758 * 301.02137 * 19 17 16 38 38 H 1.09002 * 109.47429 * 61.02272 * 19 17 16 39 39 H 0.96997 * 119.99662 * 359.97438 * 20 19 17 40 40 H 1.07999 * 123.34072 * 359.95780 * 24 23 21 41 41 H 1.08005 * 122.48184 * 180.23929 * 25 24 23 42 42 H 1.08995 * 109.57283 * 186.11016 * 29 17 16 43 43 H 1.09002 * 109.56965 * 65.86717 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3920 2.1075 -1.3947 5 1 1.5044 2.6199 0.8030 6 1 3.5966 1.4121 0.5918 7 6 2.0104 -1.2021 0.0005 8 1 2.9444 -1.2862 0.5362 9 7 1.5108 -2.2815 -0.6783 10 6 2.1410 -3.6080 -0.8832 11 1 3.2098 -3.5938 -0.6696 12 6 1.8450 -3.9626 -2.3587 13 6 0.5545 -3.1531 -2.6893 14 6 0.2115 -2.4006 -1.3830 15 1 -0.2438 -1.4290 -1.5750 16 6 -0.6912 -3.3032 -0.5268 17 6 -0.0622 -4.7136 -0.4804 18 1 -0.6307 -5.3402 0.2068 19 6 -0.0911 -5.3360 -1.8777 20 7 0.4837 -6.6825 -1.8247 21 6 0.5624 -7.4263 -2.9458 22 8 0.1553 -6.9794 -4.0025 23 6 1.1371 -8.7712 -2.8929 24 6 1.2659 -9.6206 -3.9566 25 6 1.8443 -10.8217 -3.6265 26 6 2.1704 -10.9586 -2.3317 27 9 2.7421 -12.0602 -1.7980 28 16 1.7651 -9.5553 -1.4500 29 6 1.3877 -4.6131 0.0027 30 1 -0.4850 0.8400 -0.0004 31 1 2.6695 -3.6467 -2.9978 32 1 1.6706 -5.0334 -2.4641 33 1 -0.2562 -3.8287 -2.9624 34 1 0.7477 -2.4454 -3.4956 35 1 -0.7695 -2.8917 0.4795 36 1 -1.6818 -3.3616 -0.9775 37 1 -1.1216 -5.3944 -2.2281 38 1 0.4911 -4.7191 -2.5624 39 1 0.8077 -7.0387 -0.9826 40 1 0.9468 -9.3709 -4.9577 41 1 2.0201 -11.6003 -4.3541 42 1 1.8645 -5.5907 -0.0674 43 1 1.4048 -4.2719 1.0378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048591615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:25 Heat of formation + Delta-G solvation = 77.821892 kcal Electronic energy + Delta-G solvation = -27678.253416 eV Core-core repulsion = 23769.436718 eV Total energy + Delta-G solvation = -3908.816698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -49.47845 -41.26067 -39.34405 -37.61284 -34.83895 -32.90408 -31.45004 -30.81827 -30.17491 -29.42075 -26.81375 -25.13217 -23.64132 -23.36126 -21.83463 -20.77851 -20.07920 -19.61102 -19.28172 -18.67117 -17.12604 -17.07306 -16.50861 -16.37708 -16.01296 -15.32802 -14.88757 -14.85813 -14.52404 -14.25847 -13.76759 -13.41275 -13.15308 -12.83980 -12.73692 -12.61771 -12.44110 -12.03320 -11.81474 -11.68176 -11.49876 -11.41077 -11.29336 -10.95789 -10.85775 -10.57056 -10.20094 -10.15944 -9.84665 -9.58238 -9.54844 -9.43910 -9.35710 -9.17500 -9.10003 -8.41553 -8.23684 -7.00291 -5.94175 -3.00357 -0.02207 0.59576 1.22874 1.88070 3.07204 3.14141 3.40763 3.50350 3.51505 3.89795 4.48100 4.63332 4.87421 4.90953 5.14229 5.16842 5.30766 5.38488 5.40843 5.48964 5.63298 5.65008 5.76223 5.79549 5.83692 5.96324 6.00701 6.07503 6.21199 6.30508 6.33876 6.44696 6.54098 6.57713 6.65114 6.78452 6.86238 6.96100 7.00377 7.36883 7.47654 7.52575 7.75191 8.11070 8.11996 9.04637 9.74324 10.52342 11.20941 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026865 B = 0.002724 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.988395 B =10275.355935 C =10576.878611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.008 3.992 3 Si 0.877 3.123 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.238 4.238 8 H 0.081 0.919 9 N -0.584 5.584 10 C 0.154 3.846 11 H 0.067 0.933 12 C -0.162 4.162 13 C -0.167 4.167 14 C 0.168 3.832 15 H 0.110 0.890 16 C -0.111 4.111 17 C -0.087 4.087 18 H 0.053 0.947 19 C 0.005 3.995 20 N -0.714 5.714 21 C 0.584 3.416 22 O -0.527 6.527 23 C -0.252 4.252 24 C -0.041 4.041 25 C -0.180 4.180 26 C -0.027 4.027 27 F -0.100 7.100 28 S 0.224 5.776 29 C -0.127 4.127 30 H 0.254 0.746 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.196 0.804 39 H 0.391 0.609 40 H 0.165 0.835 41 H 0.158 0.842 42 H 0.041 0.959 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.517 -20.632 -4.341 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.190 4.190 3 Si 0.706 3.294 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.206 1.206 7 C -0.364 4.364 8 H 0.099 0.901 9 N -0.305 5.305 10 C 0.046 3.954 11 H 0.085 0.915 12 C -0.200 4.200 13 C -0.205 4.205 14 C 0.061 3.939 15 H 0.128 0.872 16 C -0.151 4.151 17 C -0.106 4.106 18 H 0.071 0.929 19 C -0.114 4.114 20 N -0.365 5.365 21 C 0.369 3.631 22 O -0.405 6.405 23 C -0.373 4.373 24 C -0.073 4.073 25 C -0.213 4.213 26 C -0.165 4.165 27 F -0.079 7.079 28 S 0.488 5.512 29 C -0.167 4.167 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.211 0.789 39 H 0.225 0.775 40 H 0.182 0.818 41 H 0.175 0.825 42 H 0.060 0.940 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.328 -19.652 -3.414 19.990 hybrid contribution 0.497 -0.330 -0.693 0.914 sum 1.824 -19.981 -4.107 20.481 Atomic orbital electron populations 1.70162 1.05420 1.25784 1.51387 1.24622 0.94985 0.97488 1.01913 0.86614 0.80151 0.84962 0.77669 1.21643 1.22235 1.20589 1.18869 1.03868 0.86549 1.27126 0.90113 1.45294 1.15888 1.09016 1.60259 1.21435 0.95720 0.86520 0.91727 0.91516 1.23633 0.97504 0.99990 0.98907 1.23717 0.97006 0.99052 1.00771 1.21692 0.87046 0.97643 0.87563 0.87198 1.22286 0.97240 0.92732 1.02892 1.21507 0.97134 0.97877 0.94123 0.92905 1.25295 1.01014 0.81936 1.03117 1.46294 1.62459 1.18009 1.09725 1.16751 0.79036 0.82739 0.84618 1.90856 1.48689 1.71624 1.29359 1.24716 1.14229 1.01026 0.97358 1.20500 0.95925 0.90672 1.00207 1.20309 1.05095 1.00768 0.95131 1.21962 1.07166 0.90758 0.96567 1.91537 1.81981 1.48778 1.85603 1.83503 1.55161 1.03575 1.08917 1.22237 0.95223 0.98164 1.01039 0.93573 0.92656 0.89041 0.89402 0.92426 0.90590 0.93722 0.92667 0.78858 0.77510 0.81755 0.82459 0.94043 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.41 11.26 55.49 0.62 -23.78 16 2 C 0.01 0.23 5.19 -17.43 -0.09 0.14 16 3 Si 0.88 21.10 29.67 -169.99 -5.04 16.05 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.26 10.23 -15.06 -0.15 -6.42 16 8 H 0.08 2.11 8.02 -52.49 -0.42 1.69 16 9 N -0.58 -13.62 2.83 -152.76 -0.43 -14.05 16 10 C 0.15 2.93 4.28 -65.73 -0.28 2.65 16 11 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 12 C -0.16 -2.78 5.80 -24.34 -0.14 -2.93 16 13 C -0.17 -3.07 5.75 -24.34 -0.14 -3.21 16 14 C 0.17 3.63 3.45 -65.73 -0.23 3.40 16 15 H 0.11 2.76 6.10 -51.93 -0.32 2.45 16 16 C -0.11 -2.16 5.49 -25.58 -0.14 -2.30 16 17 C -0.09 -1.40 2.78 -89.75 -0.25 -1.65 16 18 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 19 C 0.00 0.07 2.67 -4.04 -0.01 0.06 16 20 N -0.71 -9.15 4.40 -61.72 -0.27 -9.42 16 21 C 0.58 7.91 7.55 -13.00 -0.10 7.81 16 22 O -0.53 -8.82 16.84 5.16 0.09 -8.74 16 23 C -0.25 -2.72 6.44 -36.87 -0.24 -2.95 16 24 C -0.04 -0.39 10.00 -40.45 -0.40 -0.79 16 25 C -0.18 -1.48 10.16 -41.32 -0.42 -1.90 16 26 C -0.03 -0.24 8.10 29.31 0.24 0.00 16 27 F -0.10 -0.94 17.32 2.25 0.04 -0.91 16 28 S 0.22 1.92 22.14 -107.50 -2.38 -0.46 16 29 C -0.13 -2.09 5.26 -26.28 -0.14 -2.23 16 30 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.43 4.07 -51.93 -0.21 1.22 16 33 H 0.09 1.48 4.85 -51.93 -0.25 1.23 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.86 7.98 -51.93 -0.41 0.44 16 38 H 0.20 3.13 1.14 -162.86 -0.18 2.94 16 39 H 0.39 4.26 6.48 -40.82 -0.26 3.99 16 40 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.16 0.94 8.06 -52.48 -0.42 0.51 16 42 H 0.04 0.56 6.77 -51.93 -0.35 0.21 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 345.76 15.07 5.21 5.21 Total: -1.00 -29.15 345.76 -10.02 -39.17 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.36 Total: 7.24 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.49 Total: -10.31 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.08 Total: -47.26 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 0.04 Total: -0.91 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.04 Total: 16.05 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.38 Total: -0.46 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.15 -10.02 -39.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048591615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.988 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds