Wall clock time and date at job start Tue Mar 31 2020 20:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99759 * 2 1 4 4 H 1.48493 * 109.47156 * 274.99790 * 3 2 1 5 5 H 1.48496 * 109.47161 * 35.00053 * 3 2 1 6 6 H 1.48506 * 109.47159 * 154.99839 * 3 2 1 7 7 C 1.38813 * 120.00559 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00701 * 214.93981 * 7 2 1 9 9 N 1.36944 * 119.99503 * 34.94109 * 7 2 1 10 10 C 1.48286 * 128.20908 * 175.01996 * 9 7 2 11 11 H 1.09000 * 112.21062 * 343.89360 * 10 9 7 12 12 C 1.54613 * 104.81590 * 221.88906 * 10 9 7 13 13 C 1.55893 * 103.99166 * 334.81892 * 12 10 9 14 14 C 1.48293 * 128.20712 * 355.04229 * 9 7 2 15 15 H 1.08995 * 112.21401 * 16.71426 * 14 9 7 16 16 C 1.53704 * 107.27733 * 253.16704 * 14 9 7 17 17 C 1.54504 * 108.28579 * 295.53674 * 16 14 9 18 18 H 1.09002 * 109.35409 * 174.09490 * 17 16 14 19 19 C 1.52996 * 109.64365 * 294.03839 * 17 16 14 20 20 N 1.46505 * 109.47454 * 181.02736 * 19 17 16 21 21 C 1.34772 * 120.00179 * 179.97438 * 20 19 17 22 22 O 1.21735 * 119.99756 * 359.97438 * 21 20 19 23 23 C 1.46345 * 119.99980 * 179.97438 * 21 20 19 24 24 C 1.36735 * 125.43291 * 179.71949 * 23 21 20 25 25 C 1.37343 * 113.32699 * 179.80145 * 24 23 21 26 26 C 1.34216 * 115.04846 * 0.49125 * 25 24 23 27 27 F 1.35095 * 124.54377 * 179.69170 * 26 25 24 28 28 S 1.70615 * 110.91381 * 359.72858 * 26 25 24 29 29 C 1.53150 * 109.57008 * 54.15636 * 17 16 14 30 30 H 0.96994 * 120.00380 * 0.02562 * 1 2 3 31 31 H 1.08995 * 110.38199 * 93.42472 * 12 10 9 32 32 H 1.09000 * 110.38365 * 215.79044 * 12 10 9 33 33 H 1.09001 * 110.30028 * 241.10739 * 13 12 10 34 34 H 1.09002 * 110.32270 * 118.84876 * 13 12 10 35 35 H 1.09003 * 109.56055 * 55.81784 * 16 14 9 36 36 H 1.08992 * 109.56911 * 176.17618 * 16 14 9 37 37 H 1.09006 * 109.46758 * 301.02137 * 19 17 16 38 38 H 1.09002 * 109.47429 * 61.02272 * 19 17 16 39 39 H 0.96997 * 119.99662 * 359.97438 * 20 19 17 40 40 H 1.07999 * 123.34072 * 359.95780 * 24 23 21 41 41 H 1.08005 * 122.48184 * 180.23929 * 25 24 23 42 42 H 1.08995 * 109.57283 * 186.11016 * 29 17 16 43 43 H 1.09002 * 109.56965 * 65.86717 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3920 2.1075 -1.3947 5 1 1.5044 2.6199 0.8030 6 1 3.5966 1.4121 0.5918 7 6 2.0104 -1.2021 0.0005 8 1 2.9444 -1.2862 0.5362 9 7 1.5108 -2.2815 -0.6783 10 6 2.1410 -3.6080 -0.8832 11 1 3.2098 -3.5938 -0.6696 12 6 1.8450 -3.9626 -2.3587 13 6 0.5545 -3.1531 -2.6893 14 6 0.2115 -2.4006 -1.3830 15 1 -0.2438 -1.4290 -1.5750 16 6 -0.6912 -3.3032 -0.5268 17 6 -0.0622 -4.7136 -0.4804 18 1 -0.6307 -5.3402 0.2068 19 6 -0.0911 -5.3360 -1.8777 20 7 0.4837 -6.6825 -1.8247 21 6 0.5624 -7.4263 -2.9458 22 8 0.1553 -6.9794 -4.0025 23 6 1.1371 -8.7712 -2.8929 24 6 1.2659 -9.6206 -3.9566 25 6 1.8443 -10.8217 -3.6265 26 6 2.1704 -10.9586 -2.3317 27 9 2.7421 -12.0602 -1.7980 28 16 1.7651 -9.5553 -1.4500 29 6 1.3877 -4.6131 0.0027 30 1 -0.4850 0.8400 -0.0004 31 1 2.6695 -3.6467 -2.9978 32 1 1.6706 -5.0334 -2.4641 33 1 -0.2562 -3.8287 -2.9624 34 1 0.7477 -2.4454 -3.4956 35 1 -0.7695 -2.8917 0.4795 36 1 -1.6818 -3.3616 -0.9775 37 1 -1.1216 -5.3944 -2.2281 38 1 0.4911 -4.7191 -2.5624 39 1 0.8077 -7.0387 -0.9826 40 1 0.9468 -9.3709 -4.9577 41 1 2.0201 -11.6003 -4.3541 42 1 1.8645 -5.5907 -0.0674 43 1 1.4048 -4.2719 1.0378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048591615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:24 Heat of formation + Delta-G solvation = 61.742481 kcal Electronic energy + Delta-G solvation = -27678.950671 eV Core-core repulsion = 23769.436718 eV Total energy + Delta-G solvation = -3909.513954 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.17505 -42.64801 -40.42079 -38.40880 -36.22528 -34.58656 -32.91346 -32.35981 -31.61958 -30.51632 -28.25119 -26.13030 -25.14863 -24.84553 -22.88660 -22.11215 -21.14814 -20.92127 -20.51292 -19.91081 -18.63939 -18.04508 -17.51400 -17.30871 -17.06773 -16.65568 -16.26003 -16.04575 -15.58811 -15.48085 -15.08472 -14.62801 -14.45697 -14.24840 -14.19447 -13.70486 -13.49465 -13.43091 -13.20084 -13.10660 -13.08876 -12.83163 -12.67276 -12.54441 -12.32561 -12.09452 -12.01212 -11.44621 -11.24798 -11.13609 -11.04612 -10.91714 -10.87626 -10.30341 -9.89912 -9.79334 -9.48317 -8.87725 -7.96667 -5.01047 -0.76343 -0.08412 0.52414 1.16480 1.45710 1.52078 1.57323 2.11626 2.11964 2.52849 3.18525 3.22874 3.59969 3.74045 3.92653 3.94490 4.01533 4.17404 4.20850 4.28251 4.29983 4.38304 4.52829 4.58112 4.70794 4.76729 4.77432 4.89179 4.90938 5.00444 5.04555 5.09088 5.15067 5.17513 5.26862 5.35696 5.42520 5.50349 5.56823 5.63307 5.78169 5.83155 6.21575 6.45174 7.06982 7.11055 7.79793 8.60591 9.18058 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026865 B = 0.002724 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.988395 B =10275.355935 C =10576.878611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.042 4.042 3 Si 0.934 3.066 4 H -0.295 1.295 5 H -0.301 1.301 6 H -0.272 1.272 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.144 3.856 11 H 0.067 0.933 12 C -0.149 4.149 13 C -0.159 4.159 14 C 0.160 3.840 15 H 0.068 0.932 16 C -0.105 4.105 17 C -0.077 4.077 18 H 0.074 0.926 19 C 0.015 3.985 20 N -0.708 5.708 21 C 0.587 3.413 22 O -0.563 6.563 23 C -0.280 4.280 24 C -0.034 4.034 25 C -0.177 4.177 26 C -0.034 4.034 27 F -0.103 7.103 28 S 0.261 5.739 29 C -0.119 4.119 30 H 0.248 0.752 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.049 0.951 35 H 0.038 0.962 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.185 0.815 39 H 0.403 0.597 40 H 0.170 0.830 41 H 0.181 0.819 42 H 0.080 0.920 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 -23.540 -4.732 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.238 4.238 3 Si 0.764 3.236 4 H -0.223 1.223 5 H -0.229 1.229 6 H -0.197 1.197 7 C -0.368 4.368 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.038 3.962 11 H 0.086 0.914 12 C -0.187 4.187 13 C -0.197 4.197 14 C 0.053 3.947 15 H 0.086 0.914 16 C -0.145 4.145 17 C -0.095 4.095 18 H 0.092 0.908 19 C -0.104 4.104 20 N -0.359 5.359 21 C 0.374 3.626 22 O -0.445 6.445 23 C -0.401 4.401 24 C -0.066 4.066 25 C -0.209 4.209 26 C -0.172 4.172 27 F -0.082 7.082 28 S 0.527 5.473 29 C -0.159 4.159 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.200 0.800 39 H 0.239 0.761 40 H 0.187 0.813 41 H 0.198 0.802 42 H 0.099 0.901 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.318 -22.598 -3.778 23.028 hybrid contribution 0.226 0.475 -0.556 0.765 sum 2.543 -22.123 -4.334 22.686 Atomic orbital electron populations 1.70275 1.06339 1.25636 1.53412 1.25188 0.95618 0.99812 1.03194 0.85702 0.79218 0.81739 0.76938 1.22310 1.22851 1.19700 1.19111 1.03401 0.87878 1.26447 0.90454 1.45489 1.17031 1.10213 1.60058 1.21711 0.95933 0.85190 0.93407 0.91440 1.23568 0.96714 1.01028 0.97366 1.23678 0.98408 0.99107 0.98556 1.21623 0.86854 0.96707 0.89477 0.91387 1.22093 0.97812 0.94408 1.00177 1.21370 0.96782 0.95923 0.95467 0.90772 1.24884 1.00999 0.82891 1.01632 1.46091 1.62319 1.17130 1.10376 1.17013 0.78245 0.83459 0.83924 1.90840 1.50322 1.72699 1.30594 1.24480 1.16144 1.00300 0.99186 1.20673 0.95011 0.90691 1.00264 1.20487 1.04235 1.00806 0.95372 1.22164 1.07086 0.90844 0.97092 1.91538 1.82027 1.48947 1.85673 1.83322 1.54166 1.02706 1.07135 1.22128 0.95405 0.99193 0.99136 0.94242 0.92520 0.86809 0.87431 0.93255 0.94351 0.92602 0.92728 0.80019 0.76118 0.81274 0.80215 0.90135 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.41 11.26 21.65 0.24 -52.16 16 2 C -0.04 -2.32 5.19 84.86 0.44 -1.88 16 3 Si 0.93 44.66 29.67 68.60 2.04 46.69 16 4 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.24 -12.94 10.23 84.03 0.86 -12.08 16 8 H 0.08 4.10 8.02 -2.91 -0.02 4.08 16 9 N -0.61 -28.68 2.83 -637.20 -1.80 -30.48 16 10 C 0.14 5.33 4.28 45.44 0.19 5.52 16 11 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 12 C -0.15 -4.85 5.80 32.14 0.19 -4.67 16 13 C -0.16 -5.77 5.75 32.14 0.18 -5.58 16 14 C 0.16 7.09 3.45 45.43 0.16 7.25 16 15 H 0.07 3.60 6.10 -2.39 -0.01 3.58 16 16 C -0.10 -4.09 5.49 31.34 0.17 -3.92 16 17 C -0.08 -2.30 2.78 -10.23 -0.03 -2.33 16 18 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 19 C 0.02 0.42 2.67 86.38 0.23 0.65 16 20 N -0.71 -15.90 4.40 -467.38 -2.05 -17.96 16 21 C 0.59 14.39 7.55 86.35 0.65 15.04 16 22 O -0.56 -17.81 16.84 -4.46 -0.08 -17.88 16 23 C -0.28 -5.25 6.44 24.03 0.15 -5.09 16 24 C -0.03 -0.54 10.00 21.71 0.22 -0.32 16 25 C -0.18 -2.33 10.16 21.14 0.21 -2.11 16 26 C -0.03 -0.50 8.10 66.90 0.54 0.04 16 27 F -0.10 -1.65 17.32 44.97 0.78 -0.87 16 28 S 0.26 3.64 22.14 -56.49 -1.25 2.39 16 29 C -0.12 -3.69 5.26 30.88 0.16 -3.52 16 30 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.11 3.24 4.07 -2.39 -0.01 3.23 16 33 H 0.11 3.48 4.85 -2.39 -0.01 3.47 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.05 1.55 7.98 -2.38 -0.02 1.54 16 38 H 0.18 5.47 1.14 -106.58 -0.12 5.35 16 39 H 0.40 7.20 6.48 -92.71 -0.60 6.59 16 40 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.08 1.87 6.77 -2.39 -0.02 1.86 16 43 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -64.85 345.76 2.57 -62.29 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.35 Total: 21.01 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 4.34 Total: -13.01 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -3.61 Total: -100.61 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.08 Total: -17.88 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.78 Total: -0.87 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.04 Total: 46.69 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.25 Total: 2.39 kcal Total: -64.85 2.57 -62.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048591615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.028 kcal (2) G-P(sol) polarization free energy of solvation -64.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds