Wall clock time and date at job start Tue Mar 31 2020 21:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00051 * 2 1 4 4 H 1.48505 * 109.47054 * 269.99838 * 3 2 1 5 5 H 1.48505 * 109.46994 * 29.99499 * 3 2 1 6 6 H 1.48498 * 109.47179 * 149.99829 * 3 2 1 7 7 C 1.38812 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00091 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99822 * 359.97438 * 7 2 1 10 10 C 1.46637 * 125.33048 * 0.03169 * 9 7 2 11 11 C 1.53696 * 108.01132 * 180.81437 * 10 9 7 12 12 H 1.08997 * 113.05326 * 253.80663 * 11 10 9 13 13 C 1.53722 * 109.34135 * 127.55003 * 11 10 9 14 14 N 1.46664 * 107.94701 * 266.25110 * 13 11 10 15 15 C 1.34769 * 125.34079 * 180.54464 * 14 13 11 16 16 O 1.21480 * 120.00101 * 0.02562 * 15 14 13 17 17 C 1.48455 * 120.00066 * 180.02562 * 15 14 13 18 18 C 1.39537 * 120.54945 * 180.28272 * 17 15 14 19 19 C 1.38760 * 118.26260 * 180.26154 * 18 17 15 20 20 C 1.50706 * 120.42920 * 179.73592 * 19 18 17 21 21 F 1.39902 * 109.46957 * 299.72348 * 20 19 18 22 22 F 1.39898 * 109.46958 * 59.72009 * 20 19 18 23 23 N 1.32206 * 119.15026 * 359.46210 * 19 18 17 24 24 C 1.31882 * 121.02998 * 0.27227 * 23 19 18 25 25 N 1.31580 * 121.92318 * 0.02562 * 24 23 19 26 26 C 1.46778 * 109.31927 * 0.81124 * 14 13 11 27 27 C 1.54159 * 106.52977 * 341.08982 * 26 14 13 28 28 H 1.08999 * 113.83157 * 265.68319 * 27 26 14 29 29 C 1.46750 * 125.32803 * 179.97438 * 9 7 2 30 30 H 0.97003 * 119.99983 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.76627 * 61.16902 * 10 9 7 32 32 H 1.09007 * 109.75661 * 300.45107 * 10 9 7 33 33 H 1.09005 * 109.77024 * 146.62968 * 13 11 10 34 34 H 1.09001 * 109.77165 * 25.87495 * 13 11 10 35 35 H 1.07999 * 120.87278 * 0.02562 * 18 17 15 36 36 H 1.08995 * 109.47415 * 179.72401 * 20 19 18 37 37 H 1.08007 * 119.03865 * 180.02562 * 24 23 19 38 38 H 1.09002 * 110.02510 * 100.51168 * 26 14 13 39 39 H 1.08999 * 110.02621 * 221.92611 * 26 14 13 40 40 H 1.09003 * 110.00601 * 42.37268 * 29 9 7 41 41 H 1.08997 * 110.00900 * 280.99876 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1345 -2.5243 0.0016 11 6 -0.4719 -4.0236 0.0238 12 1 -0.8371 -4.3931 -0.9344 13 6 -1.4477 -4.3088 1.1768 14 7 -0.6597 -4.7105 2.3467 15 6 -1.1664 -5.0510 3.5483 16 8 -2.3680 -5.0400 3.7260 17 6 -0.2559 -5.4393 4.6547 18 6 -0.7684 -5.7995 5.9016 19 6 0.1258 -6.1488 6.9035 20 6 -0.3740 -6.5402 8.2703 21 9 -1.0907 -5.4755 8.8272 22 9 -1.2092 -7.6570 8.1592 23 7 1.4218 -6.1391 6.6421 24 6 1.8724 -5.7987 5.4503 25 7 1.0622 -5.4547 4.4723 26 6 0.7675 -4.6775 2.0056 27 6 0.8514 -4.7079 0.4666 28 1 0.9784 -5.7079 0.0521 29 6 1.9381 -3.7216 0.0017 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5474 -2.0669 -0.8975 32 1 -0.5497 -2.0400 0.8855 33 1 -2.1261 -5.1141 0.8949 34 1 -2.0185 -3.4094 1.4078 35 1 -1.8330 -5.8026 6.0834 36 1 0.4734 -6.7825 8.9115 37 1 2.9376 -5.8024 5.2719 38 1 1.2218 -3.7639 2.3891 39 1 1.2713 -5.5492 2.4232 40 1 2.7820 -3.7443 0.6914 41 1 2.2706 -3.9793 -1.0038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048892302.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:05 Heat of formation + Delta-G solvation = -35.052891 kcal Electronic energy + Delta-G solvation = -29369.819860 eV Core-core repulsion = 24922.188118 eV Total energy + Delta-G solvation = -4447.631741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.52055 -47.50676 -41.68648 -40.03763 -38.28423 -35.19604 -34.59633 -32.84178 -32.28892 -30.39213 -29.46427 -28.11960 -26.36790 -25.49513 -24.88247 -24.01232 -22.72345 -20.32846 -20.10077 -19.39453 -18.77054 -18.09175 -17.77143 -17.36862 -16.83383 -16.41497 -15.94705 -15.82586 -15.75758 -15.30080 -14.94397 -14.64810 -14.37926 -14.26105 -13.85657 -13.72984 -13.36154 -13.20703 -12.93955 -12.81960 -12.13049 -12.11060 -11.93470 -11.59739 -11.48760 -11.34832 -11.27437 -10.92587 -10.83269 -10.58682 -10.36211 -10.23819 -10.11949 -10.09315 -9.92252 -9.66548 -9.52488 -8.63890 -8.43671 -6.86678 -5.75503 -3.09162 0.03655 0.26728 2.52450 2.61176 2.79359 3.37623 3.38045 3.42704 3.44847 3.54614 3.61393 3.78209 4.11980 4.39709 4.45688 4.46699 4.48647 4.75841 4.90252 5.02248 5.10778 5.28435 5.47968 5.55145 5.60495 5.66100 5.77356 5.92594 6.05035 6.15273 6.24574 6.26658 6.39051 6.47409 6.55749 6.61032 6.80424 7.38238 7.49210 7.53262 7.57933 7.77833 8.01282 8.23176 9.18708 9.79420 10.42785 11.36000 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.015514 B = 0.002969 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.421583 B = 9427.336977 C = 9930.796492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.185 3.815 11 C -0.124 4.124 12 H 0.093 0.907 13 C 0.118 3.882 14 N -0.578 5.578 15 C 0.574 3.426 16 O -0.531 6.531 17 C 0.152 3.848 18 C -0.134 4.134 19 C 0.096 3.904 20 C 0.329 3.671 21 F -0.186 7.186 22 F -0.187 7.187 23 N -0.484 5.484 24 C 0.299 3.701 25 N -0.469 5.469 26 C 0.117 3.883 27 C -0.116 4.116 28 H 0.089 0.911 29 C 0.147 3.853 30 H 0.253 0.747 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.167 0.833 36 H 0.140 0.860 37 H 0.214 0.786 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.039 0.961 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.501 -15.952 11.990 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.060 3.940 11 C -0.143 4.143 12 H 0.111 0.889 13 C -0.004 4.004 14 N -0.308 5.308 15 C 0.359 3.641 16 O -0.407 6.407 17 C 0.003 3.997 18 C -0.157 4.157 19 C -0.053 4.053 20 C 0.274 3.726 21 F -0.167 7.167 22 F -0.169 7.169 23 N -0.199 5.199 24 C 0.012 3.988 25 N -0.185 5.185 26 C -0.005 4.005 27 C -0.136 4.136 28 H 0.107 0.893 29 C 0.020 3.980 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.184 0.816 36 H 0.157 0.843 37 H 0.230 0.770 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 1.697 -15.705 11.961 19.814 hybrid contribution -0.446 1.010 0.087 1.107 sum 1.251 -14.696 12.047 19.044 Atomic orbital electron populations 1.69947 1.04877 1.25103 1.56903 1.24798 0.95709 0.97707 1.02095 0.86128 0.78579 0.83516 0.77575 1.21577 1.21716 1.20696 1.19026 0.90439 0.82288 1.44042 0.90361 1.44203 1.01439 0.99983 1.87246 1.21115 0.84676 0.86685 1.01552 1.23175 0.93915 1.00652 0.96598 0.88926 1.21979 0.94022 1.00199 0.84199 1.48121 1.09810 1.62697 1.10158 1.17233 0.86498 0.79258 0.81108 1.90807 1.13838 1.54544 1.81544 1.21740 0.90726 0.93511 0.93748 1.22721 1.03817 0.96385 0.92766 1.22024 0.90462 0.96652 0.96150 1.20087 0.88068 0.73932 0.90502 1.93075 1.80651 1.57201 1.85808 1.93063 1.74574 1.52406 1.96820 1.67956 1.14668 1.13240 1.24005 1.25197 1.01224 0.89823 0.82577 1.68763 1.03675 1.12018 1.34047 1.22429 0.80004 1.03554 0.94539 1.23044 0.97060 0.99069 0.94382 0.89262 1.21154 0.93768 0.85626 0.97461 0.93704 0.93674 0.93144 0.91749 0.90339 0.81580 0.84267 0.77002 0.89952 0.89333 0.94295 0.96266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 10.25 55.49 0.57 -25.94 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.17 10.25 -15.06 -0.15 -6.32 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.53 3.37 -171.92 -0.58 -15.11 16 10 C 0.18 4.24 4.75 -3.61 -0.02 4.22 16 11 C -0.12 -2.14 4.02 -88.60 -0.36 -2.49 16 12 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 13 C 0.12 1.97 6.23 -3.58 -0.02 1.95 16 14 N -0.58 -9.58 3.31 -173.05 -0.57 -10.15 16 15 C 0.57 9.54 7.84 -12.05 -0.09 9.44 16 16 O -0.53 -9.93 16.73 5.38 0.09 -9.84 16 17 C 0.15 2.12 6.75 -82.63 -0.56 1.56 16 18 C -0.13 -1.63 9.32 -38.90 -0.36 -2.00 16 19 C 0.10 1.00 6.31 -82.24 -0.52 0.48 16 20 C 0.33 2.68 5.58 36.01 0.20 2.89 16 21 F -0.19 -1.82 17.27 2.25 0.04 -1.78 16 22 F -0.19 -1.74 17.26 2.25 0.04 -1.70 16 23 N -0.48 -4.87 10.35 -10.81 -0.11 -4.99 16 24 C 0.30 2.95 12.27 -92.26 -1.13 1.82 16 25 N -0.47 -5.87 6.87 -11.14 -0.08 -5.95 16 26 C 0.12 1.83 5.00 -3.28 -0.02 1.81 16 27 C -0.12 -1.82 4.19 -88.24 -0.37 -2.19 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 C 0.15 2.78 6.37 -3.41 -0.02 2.75 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.05 1.16 7.45 -51.93 -0.39 0.78 16 32 H 0.05 1.32 6.51 -51.93 -0.34 0.98 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.45 7.44 -51.93 -0.39 1.06 16 35 H 0.17 1.95 7.74 -52.49 -0.41 1.55 16 36 H 0.14 0.69 8.12 -51.93 -0.42 0.27 16 37 H 0.21 1.29 8.06 -52.48 -0.42 0.87 16 38 H 0.08 1.52 7.72 -51.93 -0.40 1.12 16 39 H 0.09 1.21 6.22 -51.93 -0.32 0.89 16 40 H 0.04 0.71 7.95 -51.93 -0.41 0.30 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 346.55 15.07 5.22 5.22 Total: -1.00 -32.00 346.55 -8.66 -40.66 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.73 Total: -0.80 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: -3.52 Total: 13.65 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.77 Total: -62.14 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.08 Total: -3.48 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.00 -8.66 -40.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048892302.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.604 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds