Wall clock time and date at job start Tue Mar 31 2020 21:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38067 * 126.28550 * 2 1 4 4 C 1.47382 * 126.42369 * 359.95514 * 3 2 1 5 5 O 1.21612 * 120.00096 * 89.99998 * 4 3 2 6 6 N 1.34775 * 120.00143 * 270.00711 * 4 3 2 7 7 C 1.46670 * 125.33838 * 179.97438 * 6 4 3 8 8 C 1.53724 * 107.94107 * 180.54094 * 7 6 4 9 9 H 1.09000 * 112.55738 * 139.72461 * 8 7 6 10 10 C 1.53690 * 109.34048 * 265.60072 * 8 7 6 11 11 N 1.47885 * 107.36644 * 127.24461 * 10 8 7 12 12 C 1.36938 * 125.18110 * 181.07062 * 11 10 8 13 13 H 1.08004 * 119.99825 * 174.40412 * 12 11 10 14 14 C 1.38808 * 120.00414 * 354.40599 * 12 11 10 15 15 N 1.31621 * 119.99520 * 6.91239 * 14 12 11 16 16 Si 1.86791 * 120.00410 * 186.91494 * 14 12 11 17 17 H 1.48495 * 109.47505 * 94.98408 * 16 14 12 18 18 H 1.48499 * 109.47346 * 214.98568 * 16 14 12 19 19 H 1.48500 * 109.46935 * 334.98424 * 16 14 12 20 20 C 1.46745 * 109.48576 * 1.49534 * 11 10 8 21 21 C 1.53926 * 106.72170 * 341.23781 * 20 11 10 22 22 H 1.09001 * 113.01508 * 150.83624 * 21 20 11 23 23 C 1.46772 * 125.33508 * 359.69040 * 6 4 3 24 24 C 1.41386 * 107.15472 * 179.97438 * 3 2 1 25 25 Cl 1.73606 * 126.00595 * 180.02562 * 24 3 2 26 26 N 1.30534 * 107.99349 * 359.97438 * 24 3 2 27 27 N 1.34238 * 126.27630 * 179.97438 * 2 1 3 28 28 C 1.46497 * 125.73700 * 0.02562 * 27 2 1 29 29 H 1.09001 * 109.47122 * 270.00539 * 1 2 3 30 30 H 1.09004 * 109.46817 * 29.99622 * 1 2 3 31 31 H 1.08987 * 109.47436 * 150.00255 * 1 2 3 32 32 H 1.09000 * 109.76930 * 300.16376 * 7 6 4 33 33 H 1.09008 * 109.77191 * 60.92027 * 7 6 4 34 34 H 1.09001 * 109.76411 * 247.19952 * 10 8 7 35 35 H 1.08999 * 109.76452 * 7.91931 * 10 8 7 36 36 H 0.96999 * 120.00083 * 179.97438 * 15 14 12 37 37 H 1.09006 * 110.00427 * 221.92551 * 20 11 10 38 38 H 1.09003 * 110.01174 * 100.55966 * 20 11 10 39 39 H 1.09003 * 110.02691 * 280.77338 * 23 6 4 40 40 H 1.08994 * 110.03426 * 42.19576 * 23 6 4 41 41 H 1.09004 * 109.47025 * 270.01670 * 28 27 2 42 42 H 1.08990 * 109.47528 * 30.02156 * 28 27 2 43 43 H 1.08999 * 109.46875 * 150.02905 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1129 0.0000 4 6 1.8861 2.5201 -0.0009 5 8 1.7047 3.1012 1.0519 6 7 1.6864 3.1630 -1.1685 7 6 1.2519 4.5571 -1.3059 8 6 1.1399 4.8726 -2.8062 9 1 0.2671 5.4816 -3.0415 10 6 2.4516 5.5099 -3.2916 11 7 2.9112 4.7351 -4.4644 12 6 4.0592 4.9786 -5.1702 13 1 4.3616 4.3050 -5.9584 14 6 4.8341 6.0912 -4.8727 15 7 4.5424 6.8359 -3.8274 16 14 6.2909 6.5314 -5.9558 17 1 5.8708 7.5347 -6.9668 18 1 7.3775 7.0986 -5.1175 19 1 6.7826 5.3110 -6.6442 20 6 1.9425 3.6732 -4.7598 21 6 1.0995 3.4762 -3.4871 22 1 0.0878 3.1283 -3.6956 23 6 1.8752 2.5795 -2.5020 24 6 3.6599 0.6496 0.0006 25 17 5.0844 1.6419 0.0015 26 7 3.6340 -0.6555 0.0015 27 7 2.3013 -1.0822 0.0005 28 6 1.8489 -2.4756 0.0006 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3633 -0.8899 -0.5137 32 1 0.2813 4.6896 -0.8277 33 1 1.9844 5.2189 -0.8435 34 1 2.2758 6.5492 -3.5693 35 1 3.1998 5.4614 -2.5004 36 1 5.0841 7.6131 -3.6193 37 1 2.4657 2.7495 -5.0073 38 1 1.3016 3.9730 -5.5890 39 1 2.9347 2.5687 -2.7580 40 1 1.4746 1.5662 -2.5263 41 1 1.7360 -2.8209 1.0283 42 1 0.8907 -2.5465 -0.5139 43 1 2.5836 -3.0961 -0.5124 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049190102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:07 Heat of formation + Delta-G solvation = 75.276936 kcal Electronic energy + Delta-G solvation = -28012.074668 eV Core-core repulsion = 24121.023867 eV Total energy + Delta-G solvation = -3891.050801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.68429 -39.85344 -37.91685 -36.77706 -34.79669 -33.68366 -32.57276 -32.07924 -30.33472 -29.37304 -27.88241 -27.04695 -25.45400 -25.40758 -23.36876 -21.77781 -20.67929 -20.08655 -19.27332 -19.07889 -17.38756 -16.80781 -16.54308 -16.04027 -15.74829 -15.23082 -15.03593 -14.57147 -14.24031 -13.69963 -13.63532 -13.59387 -13.35933 -13.23660 -13.03666 -12.72069 -12.69909 -12.38982 -12.04904 -11.92472 -11.64296 -11.62633 -11.44986 -11.42033 -10.86487 -10.80113 -10.73933 -10.38990 -10.06590 -10.05962 -9.86555 -9.75130 -9.58449 -9.38444 -8.73606 -8.56779 -8.26014 -6.81396 -5.71202 -3.03610 1.34200 1.37554 2.12826 2.51846 2.74653 3.40719 3.41799 3.47129 3.49302 4.18276 4.28487 4.51550 4.62756 4.70495 4.74720 4.91206 4.99565 5.11172 5.13126 5.22467 5.29765 5.46961 5.51271 5.52399 5.61595 5.68226 5.70297 5.81802 5.94061 6.01683 6.21891 6.32463 6.43305 6.52222 6.58085 6.60720 6.67882 6.83193 7.18036 7.56334 7.61385 7.80809 7.83873 8.26599 8.41018 9.21962 9.83809 10.47962 11.40845 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.013912 B = 0.003878 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.143199 B = 7217.714050 C = 7881.417265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.132 3.868 3 C -0.259 4.259 4 C 0.610 3.390 5 O -0.537 6.537 6 N -0.596 5.596 7 C 0.121 3.879 8 C -0.123 4.123 9 H 0.090 0.910 10 C 0.185 3.815 11 N -0.603 5.603 12 C -0.231 4.231 13 H 0.077 0.923 14 C -0.004 4.004 15 N -0.918 5.918 16 Si 0.908 3.092 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 C 0.147 3.853 21 C -0.110 4.110 22 H 0.089 0.911 23 C 0.118 3.882 24 C 0.159 3.841 25 Cl 0.027 6.973 26 N -0.282 5.282 27 N -0.352 5.352 28 C 0.098 3.902 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.252 0.748 37 H 0.036 0.964 38 H 0.019 0.981 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.127 -17.201 6.810 21.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.001 3.999 3 C -0.274 4.274 4 C 0.396 3.604 5 O -0.414 6.414 6 N -0.328 5.328 7 C -0.002 4.002 8 C -0.143 4.143 9 H 0.109 0.891 10 C 0.061 3.939 11 N -0.330 5.330 12 C -0.359 4.359 13 H 0.095 0.905 14 C -0.201 4.201 15 N -0.565 5.565 16 Si 0.739 3.261 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.207 1.207 20 C 0.021 3.979 21 C -0.130 4.130 22 H 0.107 0.893 23 C -0.005 4.005 24 C -0.033 4.033 25 Cl 0.055 6.945 26 N -0.106 5.106 27 N -0.134 5.134 28 C -0.042 4.042 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.037 0.963 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.226 -17.887 7.448 21.909 hybrid contribution 0.664 0.985 -0.618 1.339 sum -9.562 -16.902 6.830 20.586 Atomic orbital electron populations 1.20577 0.85949 1.04553 1.04298 1.21304 0.94747 0.85571 0.98263 1.19711 0.91244 0.94195 1.22253 1.16671 0.77091 0.84173 0.82480 1.90774 1.52003 1.67862 1.30771 1.48168 1.65765 1.13216 1.05628 1.21863 0.99532 0.81871 0.96900 1.23152 1.02030 0.96469 0.92633 0.89144 1.21349 0.88820 0.94123 0.89648 1.44494 1.22176 1.33394 1.32939 1.19021 0.97995 1.06431 1.12428 0.90473 1.24785 0.99424 0.97713 0.98160 1.69960 1.40957 1.18755 1.26815 0.86154 0.81931 0.78265 0.79760 1.21651 1.21798 1.20662 1.21124 0.91124 0.92602 0.93087 1.22931 0.98561 0.95154 0.96360 0.89268 1.22051 1.01460 0.95944 0.81056 1.22594 0.89100 0.90423 1.01143 1.98455 1.34942 1.64455 1.96621 1.77185 0.96445 1.10632 1.26337 1.48013 1.02891 1.06420 1.56041 1.22008 1.01377 0.76851 1.03999 0.89117 0.89053 0.90183 0.92166 0.90713 0.93418 0.93117 0.93722 0.94597 0.96296 0.90313 0.92197 0.90084 0.88847 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 9.93 36.01 0.36 -0.37 16 2 C 0.13 1.56 7.01 -81.60 -0.57 0.98 16 3 C -0.26 -4.05 4.82 -105.04 -0.51 -4.56 16 4 C 0.61 10.82 7.19 -12.54 -0.09 10.73 16 5 O -0.54 -11.10 17.42 5.27 0.09 -11.01 16 6 N -0.60 -10.16 3.31 -173.46 -0.57 -10.74 16 7 C 0.12 2.07 6.24 -3.57 -0.02 2.05 16 8 C -0.12 -2.16 3.97 -88.61 -0.35 -2.51 16 9 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 10 C 0.18 4.31 4.84 -2.92 -0.01 4.30 16 11 N -0.60 -14.81 3.40 -170.92 -0.58 -15.39 16 12 C -0.23 -6.30 10.24 -15.06 -0.15 -6.46 16 13 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 14 C 0.00 -0.12 5.48 -17.43 -0.10 -0.21 16 15 N -0.92 -26.72 10.29 55.49 0.57 -26.15 16 16 Si 0.91 22.11 29.56 -169.99 -5.02 17.09 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 C 0.15 2.85 6.37 -3.43 -0.02 2.83 16 21 C -0.11 -1.75 4.19 -88.26 -0.37 -2.12 16 22 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 23 C 0.12 1.90 5.85 -3.29 -0.02 1.88 16 24 C 0.16 2.60 7.89 -16.91 -0.13 2.47 16 25 Cl 0.03 0.46 29.19 -51.86 -1.51 -1.05 16 26 N -0.28 -4.16 12.50 33.18 0.41 -3.75 16 27 N -0.35 -3.93 3.98 -63.34 -0.25 -4.18 16 28 C 0.10 0.54 11.24 59.85 0.67 1.21 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.76 7.96 -51.93 -0.41 0.35 16 31 H 0.08 0.35 7.05 -51.94 -0.37 -0.01 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.44 7.42 -51.92 -0.39 1.06 16 34 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 35 H 0.05 1.35 6.64 -51.93 -0.34 1.00 16 36 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.04 0.68 7.95 -51.93 -0.41 0.27 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 1.52 7.72 -51.93 -0.40 1.12 16 40 H 0.06 0.82 7.81 -51.93 -0.41 0.42 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.26 7.01 -51.93 -0.36 -0.11 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -34.70 366.29 -8.65 -43.35 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -5.98 Total: -3.94 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -1.32 Total: 10.24 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.42 Total: -60.20 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 17 Polarization: 0.46 SS G_CDS: -1.51 Total: -1.05 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.70 -8.65 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049190102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.628 kcal (2) G-P(sol) polarization free energy of solvation -34.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds