Wall clock time and date at job start Tue Mar 31 2020 20:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99974 * 2 1 4 4 H 1.48498 * 109.47473 * 240.00056 * 3 2 1 5 5 H 1.48506 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47178 * 120.00223 * 3 2 1 7 7 C 1.38812 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00144 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.46882 * 125.58137 * 0.03066 * 9 7 2 11 11 C 1.54056 * 107.70684 * 182.94332 * 10 9 7 12 12 C 1.54069 * 103.74456 * 17.12839 * 11 10 9 13 13 H 1.08999 * 109.16126 * 86.46445 * 12 11 10 14 14 C 1.47654 * 125.58069 * 179.97438 * 9 7 2 15 15 H 1.08995 * 110.56807 * 38.38427 * 14 9 7 16 16 C 1.52932 * 107.99049 * 277.36560 * 14 9 7 17 17 C 1.53271 * 109.59783 * 189.09801 * 16 14 9 18 18 C 1.53048 * 109.31055 * 64.64930 * 17 16 14 19 19 N 1.44184 * 111.77046 * 206.74419 * 12 11 10 20 20 C 1.34779 * 117.76121 * 266.47754 * 19 12 11 21 21 O 1.21281 * 119.99777 * 359.97438 * 20 19 12 22 22 C 1.50702 * 120.00241 * 180.02562 * 20 19 12 23 23 N 1.46497 * 109.47214 * 179.97438 * 22 20 19 24 24 C 1.35036 * 126.03957 * 124.99685 * 23 22 20 25 25 C 1.35374 * 107.72970 * 179.97438 * 24 23 22 26 26 Cl 1.73604 * 126.04503 * 179.97438 * 25 24 23 27 27 C 1.39929 * 107.90754 * 0.02562 * 25 24 23 28 28 N 1.30854 * 108.20932 * 359.75006 * 27 25 24 29 29 H 0.97002 * 119.99430 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.81200 * 63.39571 * 10 9 7 31 31 H 1.09000 * 109.86734 * 302.52408 * 10 9 7 32 32 H 1.09002 * 110.56868 * 135.69431 * 11 10 9 33 33 H 1.08994 * 110.57342 * 258.56160 * 11 10 9 34 34 H 1.09000 * 109.41761 * 308.24994 * 16 14 9 35 35 H 1.09000 * 109.41909 * 68.05744 * 16 14 9 36 36 H 1.09000 * 108.94550 * 304.86865 * 17 16 14 37 37 H 1.09000 * 109.66521 * 184.87343 * 17 16 14 38 38 H 1.09002 * 109.46051 * 186.50984 * 18 17 16 39 39 H 1.09008 * 109.44249 * 66.55795 * 18 17 16 40 40 H 1.09010 * 109.46865 * 299.99652 * 22 20 19 41 41 H 1.08998 * 109.47133 * 59.99015 * 22 20 19 42 42 H 1.08006 * 126.13489 * 359.97438 * 24 23 22 43 43 H 1.07996 * 125.89212 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1363 -2.5309 -0.0006 11 6 -0.4601 -4.0351 0.0748 12 6 0.8590 -4.6699 0.5553 13 1 0.8914 -4.6462 1.6446 14 6 1.9360 -3.7325 -0.0016 15 1 2.8232 -3.7507 0.6313 16 6 2.2999 -4.0848 -1.4446 17 6 2.7256 -5.5552 -1.5231 18 6 1.5333 -6.4468 -1.1685 19 7 0.9841 -6.0384 0.1188 20 6 0.5642 -7.0058 0.9580 21 8 0.1006 -6.7114 2.0393 22 6 0.6720 -8.4535 0.5533 23 7 0.1536 -9.3014 1.6296 24 6 -0.8187 -10.2308 1.5105 25 6 -1.0039 -10.7921 2.7284 26 17 -2.1438 -12.0435 3.1138 27 6 -0.1148 -10.1845 3.6218 28 7 0.5827 -9.2946 2.9631 29 1 -0.4849 0.8401 0.0004 30 1 -0.5485 -2.1098 -0.9176 31 1 -0.5586 -2.0183 0.8637 32 1 -1.2582 -4.2195 0.7939 33 1 -0.7333 -4.4178 -0.9085 34 1 1.4296 -3.9376 -2.0841 35 1 3.1101 -3.4384 -1.7822 36 1 3.5354 -5.7275 -0.8141 37 1 3.0674 -5.7847 -2.5323 38 1 1.8608 -7.4849 -1.1104 39 1 0.7668 -6.3505 -1.9376 40 1 0.0911 -8.6213 -0.3537 41 1 1.7168 -8.7018 0.3667 42 1 -1.3529 -10.4813 0.6058 43 1 -0.0176 -10.4139 4.6727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049758948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:48 Heat of formation + Delta-G solvation = 81.452447 kcal Electronic energy + Delta-G solvation = -27397.634129 eV Core-core repulsion = 23506.851119 eV Total energy + Delta-G solvation = -3890.783010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -41.58294 -40.44318 -38.01983 -36.61870 -35.52239 -33.61479 -32.70015 -32.26149 -30.32172 -29.26727 -28.60796 -27.47462 -24.59441 -24.45706 -22.21411 -21.87733 -21.44409 -20.43468 -19.92224 -18.23823 -17.78093 -17.36494 -16.96229 -15.95594 -15.75462 -14.89200 -14.81222 -14.67612 -14.62201 -14.22360 -13.95981 -13.73109 -13.50919 -13.48651 -13.21753 -12.79797 -12.49212 -12.11629 -12.01563 -11.92574 -11.59278 -11.47648 -11.18092 -11.00813 -10.82114 -10.69550 -10.68795 -10.57993 -10.25251 -10.15106 -9.97940 -9.68584 -9.66187 -9.49798 -8.64748 -8.63405 -8.45226 -6.90847 -5.74571 -3.09721 1.44519 1.67973 2.42015 2.47641 2.52386 2.98123 3.38302 3.42836 3.44056 4.08418 4.29733 4.40825 4.44770 4.59722 4.73524 4.77561 4.96061 5.15356 5.20453 5.31595 5.36087 5.37572 5.44367 5.56174 5.58962 5.81114 5.88434 6.00200 6.13366 6.14551 6.22840 6.29215 6.43927 6.49994 6.51182 6.67296 6.88668 7.00692 7.33079 7.35306 7.52557 7.59209 7.79493 8.12677 8.22034 9.17234 9.77016 10.41415 11.36195 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.025127 B = 0.002422 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.050638 B =11556.845292 C =12082.873190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.179 3.821 11 C -0.150 4.150 12 C 0.138 3.862 13 H 0.092 0.908 14 C 0.161 3.839 15 H 0.053 0.947 16 C -0.129 4.129 17 C -0.132 4.132 18 C 0.105 3.895 19 N -0.585 5.585 20 C 0.490 3.510 21 O -0.508 6.508 22 C 0.117 3.883 23 N -0.353 5.353 24 C 0.072 3.928 25 C -0.185 4.185 26 Cl -0.047 7.047 27 C 0.058 3.942 28 N -0.248 5.248 29 H 0.253 0.747 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.127 0.873 41 H 0.118 0.882 42 H 0.183 0.817 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.184 -23.331 -2.737 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.189 4.189 12 C 0.034 3.966 13 H 0.110 0.890 14 C 0.053 3.947 15 H 0.071 0.929 16 C -0.170 4.170 17 C -0.171 4.171 18 C -0.018 4.018 19 N -0.318 5.318 20 C 0.275 3.725 21 O -0.382 6.382 22 C -0.008 4.008 23 N -0.135 5.135 24 C -0.075 4.075 25 C -0.224 4.224 26 Cl -0.019 7.019 27 C -0.130 4.130 28 N -0.068 5.068 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.145 0.855 41 H 0.136 0.864 42 H 0.200 0.800 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.747 -21.977 -2.170 22.096 hybrid contribution -0.387 0.211 -0.249 0.506 sum 0.361 -21.766 -2.419 21.903 Atomic orbital electron populations 1.69960 1.04895 1.25246 1.56613 1.24812 0.95712 0.97689 1.02018 0.86193 0.78453 0.83147 0.77900 1.21164 1.21596 1.21118 1.18960 0.90385 0.82109 1.44296 0.90434 1.44493 1.01478 0.99230 1.86771 1.21057 0.84296 0.87888 1.01316 1.22985 0.96469 0.99520 0.99928 1.21156 0.96749 0.78563 1.00114 0.88955 1.20889 0.93900 0.86181 0.93773 0.92877 1.22164 1.01687 0.93177 0.99946 1.21871 0.96854 0.96835 1.01532 1.21583 0.96729 0.98297 0.85146 1.47112 1.61360 1.06407 1.16886 1.20453 0.79723 0.87018 0.85346 1.90801 1.43258 1.82645 1.21449 1.21713 1.02733 0.88801 0.87577 1.47888 1.28976 1.28678 1.07914 1.22191 0.93463 0.92377 0.99485 1.20730 1.03838 1.03315 0.94528 1.98322 1.58820 1.50568 1.94143 1.23927 0.94356 0.94101 1.00606 1.77678 1.22144 1.19558 0.87403 0.93625 0.94128 0.92940 0.91993 0.92598 0.92045 0.91494 0.91659 0.90922 0.90634 0.91419 0.85521 0.86384 0.79986 0.79249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.29 55.49 0.57 -26.16 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -6.20 10.27 -15.06 -0.15 -6.35 16 8 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.60 -14.62 2.94 -163.73 -0.48 -15.10 16 10 C 0.18 4.32 5.39 -3.28 -0.02 4.30 16 11 C -0.15 -2.88 6.52 -25.62 -0.17 -3.05 16 12 C 0.14 2.50 2.76 -68.47 -0.19 2.31 16 13 H 0.09 1.93 7.05 -51.93 -0.37 1.56 16 14 C 0.16 3.15 3.24 -67.20 -0.22 2.93 16 15 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.13 -2.10 5.40 -26.63 -0.14 -2.24 16 17 C -0.13 -1.47 6.06 -26.57 -0.16 -1.63 16 18 C 0.11 1.02 6.09 -4.39 -0.03 0.99 16 19 N -0.58 -8.02 2.80 -167.50 -0.47 -8.49 16 20 C 0.49 6.85 7.61 -10.98 -0.08 6.76 16 21 O -0.51 -9.62 14.98 5.56 0.08 -9.53 16 22 C 0.12 1.04 5.32 -5.19 -0.03 1.01 16 23 N -0.35 -4.00 3.40 -62.50 -0.21 -4.21 16 24 C 0.07 0.67 11.43 -17.16 -0.20 0.48 16 25 C -0.19 -1.93 6.65 -39.97 -0.27 -2.19 16 26 Cl -0.05 -0.43 29.30 -51.86 -1.52 -1.95 16 27 C 0.06 0.67 12.02 -17.34 -0.21 0.46 16 28 N -0.25 -3.45 11.65 30.64 0.36 -3.09 16 29 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.04 1.07 7.60 -51.93 -0.39 0.67 16 31 H 0.05 1.43 7.25 -51.93 -0.38 1.05 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.44 5.82 -51.93 -0.30 0.14 16 39 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.13 0.62 7.96 -51.92 -0.41 0.21 16 41 H 0.12 0.78 7.32 -51.93 -0.38 0.40 16 42 H 0.18 1.02 8.06 -52.48 -0.42 0.59 16 43 H 0.19 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -34.38 360.82 -9.21 -43.60 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.00 Total: -0.84 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -1.95 Total: 3.52 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.23 Total: -57.06 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.52 Total: -1.95 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.38 -9.21 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049758948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.047 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds