Wall clock time and date at job start Tue Mar 31 2020 21:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34236 * 126.28104 * 2 1 4 4 H 0.96992 * 125.73850 * 359.96046 * 3 2 1 5 5 N 1.39932 * 108.52088 * 180.23144 * 3 2 1 6 6 C 1.30529 * 108.89837 * 359.76537 * 5 3 2 7 7 Cl 1.73600 * 126.00837 * 180.02562 * 6 5 3 8 8 C 1.38071 * 126.28173 * 179.83717 * 2 1 3 9 9 C 1.47382 * 126.41946 * 0.02963 * 8 2 1 10 10 O 1.21617 * 120.00390 * 269.71730 * 9 8 2 11 11 N 1.34777 * 119.99881 * 89.71729 * 9 8 2 12 12 C 1.44499 * 116.65196 * 353.92378 * 11 9 8 13 13 C 1.51612 * 112.73789 * 154.43574 * 12 11 9 14 14 C 1.51329 * 112.05441 * 42.34107 * 13 12 11 15 15 C 1.50769 * 113.46722 * 304.71800 * 14 13 12 16 16 H 1.08998 * 109.16485 * 169.09867 * 15 14 13 17 17 C 1.53898 * 110.58856 * 289.12725 * 15 14 13 18 18 N 1.46834 * 107.50272 * 140.15988 * 17 15 14 19 19 C 1.36931 * 125.37815 * 181.01039 * 18 17 15 20 20 H 1.07998 * 120.00258 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99933 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00278 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00259 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46973 * 270.00371 * 23 21 19 25 25 H 1.48500 * 109.46843 * 29.99842 * 23 21 19 26 26 H 1.48491 * 109.47214 * 150.00377 * 23 21 19 27 27 C 1.46908 * 109.24159 * 1.27102 * 18 17 15 28 28 C 1.44122 * 116.64873 * 173.89867 * 11 9 8 29 29 H 1.08997 * 109.48739 * 74.16007 * 28 11 9 30 30 H 1.08998 * 109.46952 * 270.16760 * 1 2 3 31 31 H 1.09004 * 109.47148 * 30.16722 * 1 2 3 32 32 H 1.08998 * 109.47082 * 150.16672 * 1 2 3 33 33 H 1.09005 * 108.82521 * 33.60153 * 12 11 9 34 34 H 1.08991 * 108.74422 * 275.21962 * 12 11 9 35 35 H 1.09001 * 108.96275 * 281.68193 * 13 12 11 36 36 H 1.08991 * 108.89869 * 162.95824 * 13 12 11 37 37 H 1.08997 * 108.68567 * 183.68775 * 14 13 12 38 38 H 1.08996 * 108.68319 * 65.74316 * 14 13 12 39 39 H 1.08997 * 109.84790 * 20.66791 * 17 15 14 40 40 H 1.09003 * 109.84591 * 259.64408 * 17 15 14 41 41 H 0.97000 * 120.00674 * 179.97438 * 22 21 19 42 42 H 1.08994 * 110.08774 * 101.06313 * 27 18 17 43 43 H 1.09002 * 110.08359 * 222.63976 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 -0.0005 5 7 3.6340 0.6553 -0.0054 6 6 3.6599 -0.6498 -0.0035 7 17 5.0842 -1.6422 -0.0078 8 6 2.3240 -1.1130 0.0032 9 6 1.8858 -2.5202 0.0065 10 8 1.7095 -3.0997 1.0611 11 7 1.6804 -3.1648 -1.1591 12 6 1.7791 -2.3730 -2.3638 13 6 2.1499 -3.1995 -3.5795 14 6 1.4029 -4.5148 -3.6218 15 6 1.5773 -5.3447 -2.3752 16 1 0.8680 -6.1721 -2.3941 17 6 3.0069 -5.9089 -2.2963 18 7 3.4382 -5.8246 -0.8953 19 6 4.6623 -6.2104 -0.4180 20 1 5.4016 -6.6160 -1.0927 21 6 4.9529 -6.0802 0.9331 22 7 4.0517 -5.5864 1.7556 23 14 6.6225 -6.6072 1.5844 24 1 6.5681 -8.0354 1.9880 25 1 7.6459 -6.4315 0.5228 26 1 6.9807 -5.7740 2.7602 27 6 2.3468 -5.2666 -0.0855 28 6 1.3855 -4.5731 -1.0758 29 1 0.3649 -4.7103 -0.7187 30 1 -0.3633 0.0030 1.0276 31 1 -0.3634 0.8885 -0.5164 32 1 -0.3633 -0.8915 -0.5112 33 1 2.5366 -1.6029 -2.2175 34 1 0.8186 -1.8910 -2.5458 35 1 3.2210 -3.4009 -3.5576 36 1 1.9153 -2.6298 -4.4786 37 1 1.7574 -5.0904 -4.4769 38 1 0.3413 -4.3092 -3.7587 39 1 3.6732 -5.3181 -2.9248 40 1 3.0129 -6.9488 -2.6233 41 1 4.2546 -5.4957 2.6998 42 1 1.8289 -6.0651 0.4457 43 1 2.7412 -4.5389 0.6238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050062419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:52 Heat of formation + Delta-G solvation = 80.508478 kcal Electronic energy + Delta-G solvation = -29297.934041 eV Core-core repulsion = 25407.110097 eV Total energy + Delta-G solvation = -3890.823944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.55230 -40.04423 -37.37365 -36.42591 -35.26632 -33.05518 -32.68194 -31.98499 -31.13791 -29.48856 -27.79052 -26.78020 -25.53036 -24.04796 -22.55581 -21.84161 -21.76806 -20.36701 -19.02352 -17.85720 -17.56851 -16.70910 -16.20824 -15.59874 -15.46563 -15.03371 -14.89279 -14.42077 -14.31628 -13.94470 -13.61557 -13.53247 -13.40272 -13.19476 -12.87845 -12.44371 -12.20322 -12.05246 -11.67901 -11.56902 -11.45247 -11.43900 -10.98835 -10.87765 -10.70977 -10.48382 -10.44951 -10.21332 -10.15845 -9.97201 -9.79373 -9.48357 -9.31044 -8.98288 -8.59454 -8.33454 -7.78640 -6.58391 -5.41411 -2.83538 1.54554 1.73588 2.33044 2.94492 3.13560 3.50222 3.54982 3.57776 3.69729 4.45685 4.64626 4.75925 4.84589 5.01316 5.05033 5.16958 5.24903 5.30885 5.39399 5.47369 5.60759 5.65572 5.67044 5.76833 5.80889 5.88595 6.00852 6.05901 6.10674 6.15578 6.31645 6.34787 6.55674 6.71889 6.82176 6.90437 6.96758 7.25914 7.32298 7.70612 7.84326 7.92713 8.26340 8.68385 8.90089 9.43282 10.05240 10.68903 11.60391 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.006227 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.969622 B = 4495.745706 C = 5853.496564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.126 3.874 3 N -0.454 5.454 4 H 0.444 0.556 5 N -0.284 5.284 6 C 0.157 3.843 7 Cl 0.042 6.958 8 C -0.250 4.250 9 C 0.581 3.419 10 O -0.489 6.489 11 N -0.577 5.577 12 C 0.125 3.875 13 C -0.127 4.127 14 C -0.100 4.100 15 C -0.099 4.099 16 H 0.076 0.924 17 C 0.142 3.858 18 N -0.599 5.599 19 C -0.230 4.230 20 H 0.072 0.928 21 C -0.002 4.002 22 N -0.901 5.901 23 Si 0.899 3.101 24 H -0.290 1.290 25 H -0.283 1.283 26 H -0.291 1.291 27 C 0.135 3.865 28 C 0.130 3.870 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.021 0.979 40 H 0.017 0.983 41 H 0.251 0.749 42 H 0.019 0.981 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.861 13.765 -9.615 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.005 4.005 3 N -0.164 5.164 4 H 0.289 0.711 5 N -0.110 5.110 6 C -0.035 4.035 7 Cl 0.070 6.930 8 C -0.266 4.266 9 C 0.365 3.635 10 O -0.362 6.362 11 N -0.310 5.310 12 C 0.001 3.999 13 C -0.165 4.165 14 C -0.138 4.138 15 C -0.119 4.119 16 H 0.095 0.905 17 C 0.015 3.985 18 N -0.326 5.326 19 C -0.358 4.358 20 H 0.090 0.910 21 C -0.199 4.199 22 N -0.548 5.548 23 Si 0.729 3.271 24 H -0.217 1.217 25 H -0.209 1.209 26 H -0.217 1.217 27 C 0.011 3.989 28 C 0.027 3.973 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.062 0.938 42 H 0.037 0.963 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.014 14.320 -8.877 19.108 hybrid contribution 0.553 -0.636 0.241 0.876 sum -8.461 13.684 -8.636 18.260 Atomic orbital electron populations 1.20564 0.86038 1.04364 1.04419 1.21338 0.94623 0.86151 0.98414 1.45765 1.03233 1.08296 1.59076 0.71077 1.77138 0.96247 1.11001 1.26645 1.22835 0.90036 0.90311 1.00307 1.98506 1.34384 1.63680 1.96404 1.20009 0.91202 0.95015 1.20346 1.17191 0.78047 0.84059 0.84190 1.90845 1.48161 1.66134 1.31057 1.46485 1.70492 1.08622 1.05389 1.20629 1.00240 0.93632 0.85417 1.21101 1.02085 0.96430 0.96885 1.20509 0.99849 0.95729 0.97686 1.21264 0.99296 0.97750 0.93578 0.90550 1.21266 0.91528 0.96637 0.89026 1.44288 1.12844 1.74191 1.01245 1.18896 0.89519 1.35512 0.91890 0.90988 1.24756 0.97574 1.01486 0.96134 1.69895 1.32223 1.49512 1.03125 0.86327 0.84184 0.77988 0.78551 1.21739 1.20928 1.21699 1.22468 0.86698 0.97414 0.92328 1.21267 0.99600 0.79176 0.97300 0.92393 0.89118 0.90348 0.89079 0.91429 0.93461 0.91051 0.91171 0.91711 0.92599 0.96124 0.96497 0.93793 0.96283 0.84013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.25 36.01 0.37 -0.41 16 2 C 0.13 1.54 7.29 -81.60 -0.60 0.95 16 3 N -0.45 -5.04 7.28 33.86 0.25 -4.80 16 4 H 0.44 2.95 8.96 -182.73 -1.64 1.31 16 5 N -0.28 -4.38 12.64 33.18 0.42 -3.96 16 6 C 0.16 2.80 7.56 -16.91 -0.13 2.67 16 7 Cl 0.04 0.84 29.19 -51.86 -1.51 -0.67 16 8 C -0.25 -4.24 3.77 -105.04 -0.40 -4.64 16 9 C 0.58 11.57 6.26 -12.54 -0.08 11.49 16 10 O -0.49 -11.92 14.24 5.26 0.07 -11.85 16 11 N -0.58 -10.39 3.09 -171.01 -0.53 -10.92 16 12 C 0.12 1.76 5.84 -5.81 -0.03 1.72 16 13 C -0.13 -1.65 5.84 -28.28 -0.17 -1.82 16 14 C -0.10 -1.32 5.10 -28.69 -0.15 -1.46 16 15 C -0.10 -1.72 2.96 -91.61 -0.27 -1.99 16 16 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 17 C 0.14 3.00 6.74 -3.39 -0.02 2.98 16 18 N -0.60 -15.77 3.39 -171.19 -0.58 -16.35 16 19 C -0.23 -6.60 10.25 -15.06 -0.15 -6.76 16 20 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 21 C 0.00 -0.07 5.48 -17.43 -0.10 -0.16 16 22 N -0.90 -27.57 10.17 55.49 0.56 -27.01 16 23 Si 0.90 23.06 29.55 -169.99 -5.02 18.04 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 27 C 0.14 3.49 4.68 -3.05 -0.01 3.48 16 28 C 0.13 2.60 3.20 -68.77 -0.22 2.38 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.80 7.96 -51.93 -0.41 0.39 16 33 H 0.07 1.00 6.25 -51.93 -0.32 0.67 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 1.07 7.10 -51.93 -0.37 0.71 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.02 0.44 6.71 -51.93 -0.35 0.09 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.14 4.05 3.05 -51.93 -0.16 3.89 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -35.88 353.66 -9.99 -45.87 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -7.02 Total: -2.13 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -1.95 Total: 8.44 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.12 Total: -63.03 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.07 Total: -11.85 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Atomic # 17 Polarization: 0.84 SS G_CDS: -1.51 Total: -0.67 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.88 -9.99 -45.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050062419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.378 kcal (2) G-P(sol) polarization free energy of solvation -35.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds