Wall clock time and date at job start Tue Mar 31 2020 21:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34236 * 126.28104 * 2 1 4 4 H 0.96992 * 125.73850 * 359.96046 * 3 2 1 5 5 N 1.39932 * 108.52088 * 180.23144 * 3 2 1 6 6 C 1.30529 * 108.89837 * 359.76537 * 5 3 2 7 7 Cl 1.73600 * 126.00837 * 180.02562 * 6 5 3 8 8 C 1.38071 * 126.28173 * 179.83717 * 2 1 3 9 9 C 1.47382 * 126.41946 * 0.02963 * 8 2 1 10 10 O 1.21617 * 120.00390 * 269.71730 * 9 8 2 11 11 N 1.34777 * 119.99881 * 89.71729 * 9 8 2 12 12 C 1.44499 * 116.65196 * 353.92378 * 11 9 8 13 13 C 1.51612 * 112.73789 * 154.43574 * 12 11 9 14 14 C 1.51329 * 112.05441 * 42.34107 * 13 12 11 15 15 C 1.50769 * 113.46722 * 304.71800 * 14 13 12 16 16 H 1.08998 * 109.16485 * 169.09867 * 15 14 13 17 17 C 1.53898 * 110.58856 * 289.12725 * 15 14 13 18 18 N 1.46834 * 107.50272 * 140.15988 * 17 15 14 19 19 C 1.36931 * 125.37815 * 181.01039 * 18 17 15 20 20 H 1.07998 * 120.00258 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.99933 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00278 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00259 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46973 * 270.00371 * 23 21 19 25 25 H 1.48500 * 109.46843 * 29.99842 * 23 21 19 26 26 H 1.48491 * 109.47214 * 150.00377 * 23 21 19 27 27 C 1.46908 * 109.24159 * 1.27102 * 18 17 15 28 28 C 1.44122 * 116.64873 * 173.89867 * 11 9 8 29 29 H 1.08997 * 109.48739 * 74.16007 * 28 11 9 30 30 H 1.08998 * 109.46952 * 270.16760 * 1 2 3 31 31 H 1.09004 * 109.47148 * 30.16722 * 1 2 3 32 32 H 1.08998 * 109.47082 * 150.16672 * 1 2 3 33 33 H 1.09005 * 108.82521 * 33.60153 * 12 11 9 34 34 H 1.08991 * 108.74422 * 275.21962 * 12 11 9 35 35 H 1.09001 * 108.96275 * 281.68193 * 13 12 11 36 36 H 1.08991 * 108.89869 * 162.95824 * 13 12 11 37 37 H 1.08997 * 108.68567 * 183.68775 * 14 13 12 38 38 H 1.08996 * 108.68319 * 65.74316 * 14 13 12 39 39 H 1.08997 * 109.84790 * 20.66791 * 17 15 14 40 40 H 1.09003 * 109.84591 * 259.64408 * 17 15 14 41 41 H 0.97000 * 120.00674 * 179.97438 * 22 21 19 42 42 H 1.08994 * 110.08774 * 101.06313 * 27 18 17 43 43 H 1.09002 * 110.08359 * 222.63976 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 -0.0005 5 7 3.6340 0.6553 -0.0054 6 6 3.6599 -0.6498 -0.0035 7 17 5.0842 -1.6422 -0.0078 8 6 2.3240 -1.1130 0.0032 9 6 1.8858 -2.5202 0.0065 10 8 1.7095 -3.0997 1.0611 11 7 1.6804 -3.1648 -1.1591 12 6 1.7791 -2.3730 -2.3638 13 6 2.1499 -3.1995 -3.5795 14 6 1.4029 -4.5148 -3.6218 15 6 1.5773 -5.3447 -2.3752 16 1 0.8680 -6.1721 -2.3941 17 6 3.0069 -5.9089 -2.2963 18 7 3.4382 -5.8246 -0.8953 19 6 4.6623 -6.2104 -0.4180 20 1 5.4016 -6.6160 -1.0927 21 6 4.9529 -6.0802 0.9331 22 7 4.0517 -5.5864 1.7556 23 14 6.6225 -6.6072 1.5844 24 1 6.5681 -8.0354 1.9880 25 1 7.6459 -6.4315 0.5228 26 1 6.9807 -5.7740 2.7602 27 6 2.3468 -5.2666 -0.0855 28 6 1.3855 -4.5731 -1.0758 29 1 0.3649 -4.7103 -0.7187 30 1 -0.3633 0.0030 1.0276 31 1 -0.3634 0.8885 -0.5164 32 1 -0.3633 -0.8915 -0.5112 33 1 2.5366 -1.6029 -2.2175 34 1 0.8186 -1.8910 -2.5458 35 1 3.2210 -3.4009 -3.5576 36 1 1.9153 -2.6298 -4.4786 37 1 1.7574 -5.0904 -4.4769 38 1 0.3413 -4.3092 -3.7587 39 1 3.6732 -5.3181 -2.9248 40 1 3.0129 -6.9488 -2.6233 41 1 4.2546 -5.4957 2.6998 42 1 1.8289 -6.0651 0.4457 43 1 2.7412 -4.5389 0.6238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050062419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:51 Heat of formation + Delta-G solvation = 54.532839 kcal Electronic energy + Delta-G solvation = -29299.060429 eV Core-core repulsion = 25407.110097 eV Total energy + Delta-G solvation = -3891.950332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.73972 -41.47210 -38.92097 -37.83989 -36.91447 -34.62923 -33.70626 -33.66452 -32.41350 -31.23315 -29.00848 -28.15101 -27.26830 -25.62993 -23.91286 -23.21676 -22.99258 -22.10484 -20.35389 -19.23996 -18.99677 -18.36986 -17.63616 -17.09623 -16.84900 -16.46808 -16.28195 -15.95146 -15.72647 -15.62460 -15.05315 -14.92431 -14.46959 -14.23001 -14.01435 -13.78738 -13.55130 -13.51576 -13.26890 -13.02877 -12.95189 -12.93651 -12.71539 -12.70521 -12.38541 -12.11649 -11.87599 -11.79489 -11.67282 -11.54534 -11.38045 -11.26663 -10.75943 -10.49154 -10.35870 -9.76324 -9.29367 -8.72743 -7.63737 -5.08365 0.46119 0.49634 1.05213 1.40967 1.42873 1.51100 1.63038 1.96248 2.36116 2.51829 3.42354 3.47156 3.65042 3.77447 3.80171 3.92902 3.96097 4.07347 4.11961 4.15286 4.23255 4.58463 4.62483 4.67286 4.69453 4.75646 4.81216 4.84595 4.92181 4.97519 5.04432 5.11418 5.19782 5.25876 5.41614 5.49726 5.51550 5.59010 5.92135 6.02705 6.12643 6.30528 6.49238 6.70203 7.20483 7.40718 7.92708 8.53928 9.34169 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.006227 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.969622 B = 4495.745706 C = 5853.496564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.163 3.837 3 N -0.424 5.424 4 H 0.467 0.533 5 N -0.295 5.295 6 C 0.140 3.860 7 Cl 0.006 6.994 8 C -0.290 4.290 9 C 0.581 3.419 10 O -0.549 6.549 11 N -0.573 5.573 12 C 0.116 3.884 13 C -0.125 4.125 14 C -0.095 4.095 15 C -0.088 4.088 16 H 0.090 0.910 17 C 0.135 3.865 18 N -0.619 5.619 19 C -0.239 4.239 20 H 0.074 0.926 21 C -0.056 4.056 22 N -0.926 5.926 23 Si 0.957 3.043 24 H -0.285 1.285 25 H -0.270 1.270 26 H -0.298 1.298 27 C 0.134 3.866 28 C 0.142 3.858 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.025 0.975 40 H 0.019 0.981 41 H 0.239 0.761 42 H -0.030 1.030 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.978 16.144 -12.551 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.029 3.971 3 N -0.136 5.136 4 H 0.318 0.682 5 N -0.122 5.122 6 C -0.051 4.051 7 Cl 0.033 6.967 8 C -0.305 4.305 9 C 0.367 3.633 10 O -0.426 6.426 11 N -0.304 5.304 12 C -0.006 4.006 13 C -0.163 4.163 14 C -0.133 4.133 15 C -0.107 4.107 16 H 0.108 0.892 17 C 0.010 3.990 18 N -0.345 5.345 19 C -0.368 4.368 20 H 0.092 0.908 21 C -0.250 4.250 22 N -0.574 5.574 23 Si 0.787 3.213 24 H -0.212 1.212 25 H -0.195 1.195 26 H -0.225 1.225 27 C 0.009 3.991 28 C 0.037 3.963 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.132 0.868 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.043 0.957 40 H 0.037 0.963 41 H 0.049 0.951 42 H -0.012 1.012 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.125 16.745 -11.899 23.361 hybrid contribution 1.143 -1.298 1.128 2.065 sum -9.983 15.447 -10.772 21.314 Atomic orbital electron populations 1.20824 0.82411 1.06578 1.05608 1.21817 0.96208 0.84576 0.94507 1.45762 1.01657 1.09418 1.56810 0.68216 1.77057 0.98621 1.09714 1.26809 1.22729 0.89167 0.90894 1.02350 1.98480 1.36492 1.64991 1.96708 1.19861 0.91647 0.94675 1.24326 1.17624 0.76803 0.85093 0.83742 1.90812 1.50839 1.67813 1.33179 1.46555 1.69498 1.07805 1.06561 1.20969 1.02263 0.93281 0.84047 1.21155 1.00289 0.96830 0.97983 1.20525 1.02084 0.95193 0.95472 1.21291 0.96649 0.98403 0.94360 0.89186 1.21507 0.94245 0.97018 0.86261 1.44548 1.12279 1.74090 1.03546 1.19235 0.90706 1.34717 0.92144 0.90773 1.25486 1.00750 1.02248 0.96537 1.70198 1.33802 1.50962 1.02465 0.85391 0.80776 0.77402 0.77779 1.21226 1.19527 1.22487 1.22235 0.87406 0.95761 0.93735 1.20918 0.97875 0.80325 0.97204 0.91835 0.88299 0.85611 0.89298 0.92161 0.89331 0.93916 0.86839 0.89830 0.89302 0.95748 0.96347 0.95102 1.01209 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.25 71.24 0.73 -0.40 16 2 C 0.16 3.50 7.29 42.15 0.31 3.81 16 3 N -0.42 -8.05 7.28 -46.79 -0.34 -8.39 16 4 H 0.47 4.14 8.96 -213.44 -1.91 2.23 16 5 N -0.30 -8.73 12.64 -48.95 -0.62 -9.35 16 6 C 0.14 5.02 7.56 85.66 0.65 5.66 16 7 Cl 0.01 0.23 29.19 -2.72 -0.08 0.15 16 8 C -0.29 -9.65 3.77 -20.13 -0.08 -9.73 16 9 C 0.58 23.53 6.26 86.65 0.54 24.08 16 10 O -0.55 -28.27 14.24 -4.09 -0.06 -28.33 16 11 N -0.57 -20.25 3.09 -813.22 -2.51 -22.76 16 12 C 0.12 2.94 5.84 86.30 0.50 3.44 16 13 C -0.12 -2.77 5.84 29.59 0.17 -2.60 16 14 C -0.10 -2.11 5.10 29.32 0.15 -1.96 16 15 C -0.09 -2.89 2.96 -11.43 -0.03 -2.92 16 16 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 17 C 0.13 5.71 6.74 86.62 0.58 6.30 16 18 N -0.62 -33.82 3.39 -695.53 -2.36 -36.17 16 19 C -0.24 -14.25 10.25 84.03 0.86 -13.38 16 20 H 0.07 4.27 7.83 -2.91 -0.02 4.25 16 21 C -0.06 -3.42 5.48 84.86 0.47 -2.96 16 22 N -0.93 -60.23 10.17 21.65 0.22 -60.01 16 23 Si 0.96 49.29 29.55 68.60 2.03 51.32 16 24 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 25 H -0.27 -13.18 7.11 99.48 0.71 -12.48 16 26 H -0.30 -15.58 7.11 99.48 0.71 -14.88 16 27 C 0.13 7.28 4.68 86.80 0.41 7.69 16 28 C 0.14 5.66 3.20 45.71 0.15 5.81 16 29 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.13 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.09 1.19 7.96 -2.39 -0.02 1.17 16 33 H 0.06 1.65 6.25 -2.38 -0.01 1.64 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.04 1.20 7.10 -2.39 -0.02 1.18 16 36 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.62 8.10 -2.39 -0.02 1.60 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 39 H 0.02 1.03 6.71 -2.39 -0.02 1.01 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.24 15.48 8.31 -92.71 -0.77 14.71 16 42 H -0.03 -1.86 8.14 -2.39 -0.02 -1.88 16 43 H 0.12 7.18 3.05 -2.39 -0.01 7.18 16 Total: -1.00 -87.47 353.66 0.83 -86.64 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -0.85 Total: 4.06 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 5.41 Total: 22.84 kcal Atomic # 7 Polarization: -131.07 SS G_CDS: -5.61 Total: -136.68 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.06 Total: -28.33 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.03 Total: 51.32 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -0.08 Total: 0.15 kcal Total: -87.47 0.83 -86.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050062419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.170 kcal (2) G-P(sol) polarization free energy of solvation -87.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds