Wall clock time and date at job start Tue Mar 31 2020 20:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00185 * 2 1 4 4 H 1.48503 * 109.47136 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47126 * 299.99752 * 3 2 1 6 6 H 1.48497 * 109.47073 * 59.99691 * 3 2 1 7 7 C 1.38814 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00627 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99482 * 0.02562 * 7 2 1 10 10 C 1.47104 * 125.64728 * 180.02562 * 9 7 2 11 11 C 1.55028 * 107.12765 * 180.18079 * 10 9 7 12 12 H 1.09002 * 112.15608 * 216.40631 * 11 10 9 13 13 C 1.52955 * 107.60282 * 92.89836 * 11 10 9 14 14 C 1.52732 * 110.88319 * 194.02975 * 13 11 10 15 15 C 1.53431 * 107.91126 * 64.54114 * 14 13 11 16 16 N 1.46790 * 107.32314 * 300.86193 * 15 14 13 17 17 C 1.34784 * 119.52072 * 232.83423 * 16 15 14 18 18 O 1.21284 * 120.00053 * 179.72504 * 17 16 15 19 19 C 1.50701 * 119.99694 * 359.72386 * 17 16 15 20 20 N 1.46506 * 109.46907 * 179.97438 * 19 17 16 21 21 C 1.35038 * 126.03407 * 124.99806 * 20 19 17 22 22 C 1.35377 * 107.72514 * 180.02562 * 21 20 19 23 23 Cl 1.73603 * 126.04230 * 180.02562 * 22 21 20 24 24 C 1.39928 * 107.90798 * 359.97438 * 22 21 20 25 25 N 1.30850 * 108.21143 * 0.27013 * 24 22 21 26 26 C 1.45017 * 120.96006 * 52.55413 * 16 15 14 27 27 H 1.09007 * 109.86985 * 192.81326 * 26 16 15 28 28 C 1.47684 * 125.64821 * 0.02562 * 9 7 2 29 29 H 0.96997 * 119.99783 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.90714 * 60.80696 * 10 9 7 31 31 H 1.08998 * 110.05733 * 299.64033 * 10 9 7 32 32 H 1.08998 * 109.19599 * 314.39198 * 13 11 10 33 33 H 1.09004 * 109.19376 * 73.71536 * 13 11 10 34 34 H 1.08996 * 109.68077 * 183.57188 * 14 13 11 35 35 H 1.09001 * 109.67298 * 304.08140 * 14 13 11 36 36 H 1.09001 * 109.26229 * 181.80339 * 15 14 13 37 37 H 1.09011 * 110.63846 * 60.68939 * 15 14 13 38 38 H 1.08992 * 109.47140 * 60.00449 * 19 17 16 39 39 H 1.08996 * 109.47178 * 300.00041 * 19 17 16 40 40 H 1.08000 * 126.13844 * 359.97438 * 21 20 19 41 41 H 1.08002 * 125.88982 * 179.97438 * 24 22 21 42 42 H 1.08997 * 110.44812 * 84.73040 * 28 9 7 43 43 H 1.08997 * 110.44955 * 322.17999 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.9321 -3.7282 0.0016 11 6 0.7706 -4.7550 -0.0035 12 1 0.9986 -5.6365 0.5957 13 6 0.4782 -5.1154 -1.4610 14 6 -0.8589 -5.8433 -1.5841 15 6 -1.9670 -4.8689 -1.1638 16 7 -1.6889 -4.4605 0.2184 17 6 -2.6519 -4.5825 1.1535 18 8 -2.4299 -4.2524 2.2993 19 6 -4.0044 -5.1291 0.7754 20 7 -4.8663 -5.1620 1.9596 21 6 -6.0831 -4.5874 2.0727 22 6 -6.5471 -4.8465 3.3178 23 17 -8.0716 -4.3296 3.9678 24 6 -5.5811 -5.6055 3.9877 25 7 -4.5713 -5.7903 3.1763 26 6 -0.3912 -3.9332 0.5937 27 1 -0.3037 -3.9026 1.6799 28 6 -0.1441 -2.5333 -0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 2.5398 -3.8598 0.8968 31 1 2.5482 -3.8604 -0.8877 32 1 0.4456 -4.2028 -2.0562 33 1 1.2725 -5.7602 -1.8370 34 1 -1.0179 -6.1463 -2.6189 35 1 -0.8586 -6.7226 -0.9400 36 1 -2.9302 -5.3769 -1.2129 37 1 -1.9759 -3.9936 -1.8136 38 1 -3.8909 -6.1389 0.3810 39 1 -4.4547 -4.4907 0.0153 40 1 -6.5941 -4.0220 1.3075 41 1 -5.6542 -5.9712 5.0013 42 1 -0.5315 -2.4779 -1.0178 43 1 -0.6029 -1.7676 0.6250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050153357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:04 Heat of formation + Delta-G solvation = 81.620038 kcal Electronic energy + Delta-G solvation = -27580.844729 eV Core-core repulsion = 23690.068986 eV Total energy + Delta-G solvation = -3890.775743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.45879 -40.28266 -38.03382 -36.52023 -35.41802 -33.50657 -32.89452 -31.97095 -30.23198 -29.49468 -28.19405 -26.76696 -25.59780 -23.94646 -22.24037 -21.81799 -21.34099 -20.39567 -19.88523 -18.20774 -17.64428 -17.24621 -16.94453 -15.84594 -15.54225 -15.05700 -14.69111 -14.49700 -14.43096 -14.35230 -13.95580 -13.65677 -13.42846 -13.40362 -13.05200 -12.69615 -12.42461 -12.21715 -12.03755 -11.81926 -11.66447 -11.49435 -11.18391 -11.12538 -10.89869 -10.75673 -10.58859 -10.35941 -10.29526 -10.01270 -9.92380 -9.78210 -9.71682 -9.38617 -8.68613 -8.54160 -8.25189 -6.87862 -5.69436 -3.11221 1.54980 1.79486 2.51986 2.61101 2.68018 3.11255 3.38127 3.43740 3.46270 4.22177 4.43736 4.46309 4.53207 4.70791 4.78828 4.84425 4.98553 5.04186 5.26108 5.31239 5.40423 5.42802 5.46400 5.52436 5.60399 5.82223 5.86099 5.97847 6.03397 6.14569 6.20132 6.23293 6.35147 6.56113 6.57754 6.64737 6.83354 6.86277 7.32514 7.43464 7.57506 7.62067 7.81106 8.27101 8.32548 9.16583 9.78032 10.41404 11.34879 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.012999 B = 0.003055 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.459631 B = 9162.886516 C =10650.334178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.139 3.861 11 C -0.108 4.108 12 H 0.075 0.925 13 C -0.111 4.111 14 C -0.132 4.132 15 C 0.103 3.897 16 N -0.586 5.586 17 C 0.496 3.504 18 O -0.509 6.509 19 C 0.117 3.883 20 N -0.351 5.351 21 C 0.074 3.926 22 C -0.186 4.186 23 Cl -0.048 7.048 24 C 0.057 3.943 25 N -0.249 5.249 26 C 0.118 3.882 27 H 0.096 0.904 28 C 0.157 3.843 29 H 0.252 0.748 30 H 0.023 0.977 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.183 0.817 41 H 0.190 0.810 42 H 0.015 0.985 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.915 -14.451 -2.245 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.013 3.987 11 C -0.128 4.128 12 H 0.094 0.906 13 C -0.148 4.148 14 C -0.170 4.170 15 C -0.020 4.020 16 N -0.319 5.319 17 C 0.280 3.720 18 O -0.383 6.383 19 C -0.008 4.008 20 N -0.133 5.133 21 C -0.074 4.074 22 C -0.225 4.225 23 Cl -0.020 7.020 24 C -0.131 4.131 25 N -0.069 5.069 26 C 0.013 3.987 27 H 0.115 0.885 28 C 0.031 3.969 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.134 0.866 39 H 0.145 0.855 40 H 0.200 0.800 41 H 0.207 0.793 42 H 0.033 0.967 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.671 -14.508 -1.857 18.712 hybrid contribution -0.454 1.333 -0.064 1.410 sum -12.125 -13.175 -1.921 18.008 Atomic orbital electron populations 1.69809 1.04914 1.24726 1.57473 1.24799 0.95726 0.97790 1.02270 0.85994 0.78662 0.83550 0.77255 1.20492 1.21760 1.21694 1.19118 0.90523 0.82243 1.43233 0.90260 1.44435 1.01501 0.99911 1.86985 1.21510 0.93475 0.85538 0.98156 1.22428 0.96577 0.97754 0.95996 0.90618 1.21492 0.96020 1.00655 0.96667 1.21878 0.95752 0.98018 1.01317 1.21915 0.98282 0.98645 0.83196 1.47395 1.13042 1.62948 1.08482 1.20314 0.85744 0.79821 0.86072 1.90801 1.80407 1.48072 1.19002 1.21682 0.90127 1.04678 0.84305 1.47885 1.12973 1.41121 1.11322 1.22209 0.87635 0.99167 0.98347 1.20712 0.93289 1.12949 0.95503 1.98317 1.27856 1.90062 1.85717 1.23904 0.90083 0.98615 1.00494 1.77645 1.20862 1.17898 0.90474 1.22081 0.79437 0.96179 1.00957 0.88550 1.21962 0.85025 0.91459 0.98403 0.93772 0.95866 0.95446 0.90798 0.92224 0.90926 0.91532 0.90612 0.90094 0.86597 0.85488 0.79952 0.79316 0.96722 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.10 55.49 0.56 -26.26 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.22 -6.16 10.28 -15.06 -0.15 -6.32 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.16 3.40 -169.88 -0.58 -15.73 16 10 C 0.14 2.84 6.63 -2.64 -0.02 2.83 16 11 C -0.11 -1.81 3.56 -88.87 -0.32 -2.13 16 12 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 13 C -0.11 -1.54 4.67 -26.89 -0.13 -1.66 16 14 C -0.13 -1.38 6.12 -26.65 -0.16 -1.54 16 15 C 0.10 1.12 6.06 -3.66 -0.02 1.10 16 16 N -0.59 -8.97 2.73 -165.25 -0.45 -9.42 16 17 C 0.50 7.85 7.68 -10.98 -0.08 7.76 16 18 O -0.51 -10.67 15.01 5.55 0.08 -10.59 16 19 C 0.12 1.23 5.31 -5.19 -0.03 1.20 16 20 N -0.35 -4.48 3.41 -62.51 -0.21 -4.70 16 21 C 0.07 0.80 11.43 -17.16 -0.20 0.60 16 22 C -0.19 -2.16 6.65 -39.97 -0.27 -2.43 16 23 Cl -0.05 -0.49 29.30 -51.86 -1.52 -2.01 16 24 C 0.06 0.71 12.02 -17.34 -0.21 0.51 16 25 N -0.25 -3.73 11.63 30.64 0.36 -3.38 16 26 C 0.12 2.27 3.04 -67.47 -0.20 2.07 16 27 H 0.10 2.16 6.95 -51.93 -0.36 1.80 16 28 C 0.16 3.74 5.07 -2.83 -0.01 3.72 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.03 0.54 7.77 -51.93 -0.40 0.14 16 32 H 0.07 1.20 7.25 -51.93 -0.38 0.83 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.52 5.81 -51.93 -0.30 0.22 16 37 H 0.08 0.96 7.62 -51.92 -0.40 0.57 16 38 H 0.12 0.90 7.60 -51.93 -0.39 0.50 16 39 H 0.13 0.88 7.87 -51.93 -0.41 0.47 16 40 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.19 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.01 0.36 6.96 -51.93 -0.36 0.00 16 43 H 0.11 2.98 5.93 -51.93 -0.31 2.67 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -35.10 357.18 -9.11 -44.21 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.82 Total: 0.09 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.90 Total: 5.32 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.32 Total: -59.48 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.52 Total: -2.01 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.10 -9.11 -44.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050153357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.830 kcal (2) G-P(sol) polarization free energy of solvation -35.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds