Wall clock time and date at job start Tue Mar 31 2020 20:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00185 * 2 1 4 4 H 1.48503 * 109.47136 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47126 * 299.99752 * 3 2 1 6 6 H 1.48497 * 109.47073 * 59.99691 * 3 2 1 7 7 C 1.38814 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00627 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99482 * 0.02562 * 7 2 1 10 10 C 1.47104 * 125.64728 * 180.02562 * 9 7 2 11 11 C 1.55028 * 107.12765 * 180.18079 * 10 9 7 12 12 H 1.09002 * 112.15608 * 216.40631 * 11 10 9 13 13 C 1.52955 * 107.60282 * 92.89836 * 11 10 9 14 14 C 1.52732 * 110.88319 * 194.02975 * 13 11 10 15 15 C 1.53431 * 107.91126 * 64.54114 * 14 13 11 16 16 N 1.46790 * 107.32314 * 300.86193 * 15 14 13 17 17 C 1.34784 * 119.52072 * 232.83423 * 16 15 14 18 18 O 1.21284 * 120.00053 * 179.72504 * 17 16 15 19 19 C 1.50701 * 119.99694 * 359.72386 * 17 16 15 20 20 N 1.46506 * 109.46907 * 179.97438 * 19 17 16 21 21 C 1.35038 * 126.03407 * 124.99806 * 20 19 17 22 22 C 1.35377 * 107.72514 * 180.02562 * 21 20 19 23 23 Cl 1.73603 * 126.04230 * 180.02562 * 22 21 20 24 24 C 1.39928 * 107.90798 * 359.97438 * 22 21 20 25 25 N 1.30850 * 108.21143 * 0.27013 * 24 22 21 26 26 C 1.45017 * 120.96006 * 52.55413 * 16 15 14 27 27 H 1.09007 * 109.86985 * 192.81326 * 26 16 15 28 28 C 1.47684 * 125.64821 * 0.02562 * 9 7 2 29 29 H 0.96997 * 119.99783 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.90714 * 60.80696 * 10 9 7 31 31 H 1.08998 * 110.05733 * 299.64033 * 10 9 7 32 32 H 1.08998 * 109.19599 * 314.39198 * 13 11 10 33 33 H 1.09004 * 109.19376 * 73.71536 * 13 11 10 34 34 H 1.08996 * 109.68077 * 183.57188 * 14 13 11 35 35 H 1.09001 * 109.67298 * 304.08140 * 14 13 11 36 36 H 1.09001 * 109.26229 * 181.80339 * 15 14 13 37 37 H 1.09011 * 110.63846 * 60.68939 * 15 14 13 38 38 H 1.08992 * 109.47140 * 60.00449 * 19 17 16 39 39 H 1.08996 * 109.47178 * 300.00041 * 19 17 16 40 40 H 1.08000 * 126.13844 * 359.97438 * 21 20 19 41 41 H 1.08002 * 125.88982 * 179.97438 * 24 22 21 42 42 H 1.08997 * 110.44812 * 84.73040 * 28 9 7 43 43 H 1.08997 * 110.44955 * 322.17999 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.9321 -3.7282 0.0016 11 6 0.7706 -4.7550 -0.0035 12 1 0.9986 -5.6365 0.5957 13 6 0.4782 -5.1154 -1.4610 14 6 -0.8589 -5.8433 -1.5841 15 6 -1.9670 -4.8689 -1.1638 16 7 -1.6889 -4.4605 0.2184 17 6 -2.6519 -4.5825 1.1535 18 8 -2.4299 -4.2524 2.2993 19 6 -4.0044 -5.1291 0.7754 20 7 -4.8663 -5.1620 1.9596 21 6 -6.0831 -4.5874 2.0727 22 6 -6.5471 -4.8465 3.3178 23 17 -8.0716 -4.3296 3.9678 24 6 -5.5811 -5.6055 3.9877 25 7 -4.5713 -5.7903 3.1763 26 6 -0.3912 -3.9332 0.5937 27 1 -0.3037 -3.9026 1.6799 28 6 -0.1441 -2.5333 -0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 2.5398 -3.8598 0.8968 31 1 2.5482 -3.8604 -0.8877 32 1 0.4456 -4.2028 -2.0562 33 1 1.2725 -5.7602 -1.8370 34 1 -1.0179 -6.1463 -2.6189 35 1 -0.8586 -6.7226 -0.9400 36 1 -2.9302 -5.3769 -1.2129 37 1 -1.9759 -3.9936 -1.8136 38 1 -3.8909 -6.1389 0.3810 39 1 -4.4547 -4.4907 0.0153 40 1 -6.5941 -4.0220 1.3075 41 1 -5.6542 -5.9712 5.0013 42 1 -0.5315 -2.4779 -1.0178 43 1 -0.6029 -1.7676 0.6250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050153357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:03 Heat of formation + Delta-G solvation = 58.120470 kcal Electronic energy + Delta-G solvation = -27581.863747 eV Core-core repulsion = 23690.068986 eV Total energy + Delta-G solvation = -3891.794761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.37921 -41.54068 -39.44697 -37.34542 -36.90394 -34.76436 -34.17431 -33.46311 -31.35482 -30.96307 -29.49831 -28.10771 -27.15495 -25.46789 -23.45070 -22.88164 -22.20146 -22.00787 -21.16249 -19.46170 -18.95076 -18.62240 -18.28437 -17.04431 -16.90135 -16.62281 -15.99826 -15.77868 -15.51622 -15.38234 -15.16117 -14.83312 -14.63352 -14.57670 -14.21280 -14.07469 -13.82520 -13.64009 -13.33618 -13.13672 -13.09600 -12.82686 -12.66639 -12.37758 -12.34324 -12.12430 -12.08369 -11.80635 -11.66138 -11.50216 -11.43803 -11.18596 -11.08119 -10.77959 -10.45045 -9.60831 -9.40876 -8.91557 -7.82150 -5.26680 0.67787 0.98507 1.42639 1.44739 1.50886 1.54653 1.63012 1.76159 1.98592 2.46324 3.25260 3.29063 3.61857 3.67172 3.70717 3.85124 3.93836 3.96478 4.03289 4.08569 4.10675 4.19596 4.40081 4.51579 4.53492 4.59081 4.62896 4.70991 4.83418 4.92064 4.94385 5.11459 5.17850 5.28077 5.35908 5.37911 5.46581 5.53913 5.59146 5.75890 5.81685 6.22292 6.40728 6.53991 7.03804 7.12366 7.72233 8.35602 9.19786 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.012999 B = 0.003055 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.459631 B = 9162.886516 C =10650.334178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.296 1.296 7 C -0.238 4.238 8 H 0.083 0.917 9 N -0.625 5.625 10 C 0.132 3.868 11 C -0.093 4.093 12 H 0.095 0.905 13 C -0.108 4.108 14 C -0.123 4.123 15 C 0.093 3.907 16 N -0.585 5.585 17 C 0.487 3.513 18 O -0.573 6.573 19 C 0.122 3.878 20 N -0.360 5.360 21 C 0.081 3.919 22 C -0.202 4.202 23 Cl -0.039 7.039 24 C 0.051 3.949 25 N -0.298 5.298 26 C 0.133 3.867 27 H 0.054 0.946 28 C 0.173 3.827 29 H 0.245 0.755 30 H 0.017 0.983 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.130 0.870 37 H 0.070 0.930 38 H 0.155 0.845 39 H 0.172 0.828 40 H 0.221 0.779 41 H 0.205 0.795 42 H 0.004 0.996 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.071 -16.424 -4.446 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.223 1.223 7 C -0.367 4.367 8 H 0.101 0.899 9 N -0.352 5.352 10 C 0.007 3.993 11 C -0.112 4.112 12 H 0.113 0.887 13 C -0.145 4.145 14 C -0.160 4.160 15 C -0.027 4.027 16 N -0.317 5.317 17 C 0.275 3.725 18 O -0.451 6.451 19 C -0.002 4.002 20 N -0.142 5.142 21 C -0.066 4.066 22 C -0.240 4.240 23 Cl -0.011 7.011 24 C -0.136 4.136 25 N -0.118 5.118 26 C 0.027 3.973 27 H 0.073 0.927 28 C 0.046 3.954 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.098 0.902 36 H 0.148 0.852 37 H 0.088 0.912 38 H 0.173 0.827 39 H 0.189 0.811 40 H 0.237 0.763 41 H 0.222 0.778 42 H 0.021 0.979 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.821 -16.531 -4.099 21.318 hybrid contribution -0.079 1.968 0.653 2.075 sum -12.900 -14.563 -3.446 19.757 Atomic orbital electron populations 1.70096 1.06269 1.24847 1.58567 1.25656 0.96632 1.01078 1.02633 0.84976 0.78170 0.79268 0.76715 1.18946 1.21458 1.22291 1.19495 0.91033 0.83611 1.42556 0.89950 1.44727 1.02408 1.01116 1.86914 1.21733 0.94975 0.84521 0.98097 1.22391 0.93435 0.96787 0.98620 0.88652 1.21466 0.99351 1.00329 0.93389 1.21886 0.92797 0.97510 1.03836 1.22331 1.01417 0.98960 0.80033 1.47484 1.11401 1.62226 1.10599 1.21370 0.87462 0.78560 0.85117 1.90776 1.81755 1.50806 1.21797 1.22003 0.86545 1.07315 0.84321 1.48082 1.13703 1.41170 1.11275 1.22844 0.86934 0.97967 0.98847 1.20884 0.93726 1.13415 0.96022 1.98316 1.27152 1.89960 1.85701 1.24278 0.89889 0.98369 1.01110 1.77573 1.22299 1.19930 0.92041 1.21419 0.83018 0.94570 0.98286 0.92734 1.21548 0.84228 0.92906 0.96696 0.94505 0.96535 0.94344 0.93605 0.90067 0.87348 0.90161 0.85209 0.91195 0.82743 0.81114 0.76267 0.77838 0.97857 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.84 10.10 21.65 0.22 -57.62 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 3 Si 0.98 46.59 29.55 68.60 2.03 48.61 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 7 C -0.24 -13.60 10.28 84.03 0.86 -12.74 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 9 N -0.63 -32.78 3.40 -691.38 -2.35 -35.13 16 10 C 0.13 5.47 6.63 86.96 0.58 6.05 16 11 C -0.09 -3.06 3.56 -9.66 -0.03 -3.10 16 12 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 13 C -0.11 -2.72 4.67 30.49 0.14 -2.58 16 14 C -0.12 -2.01 6.12 30.65 0.19 -1.82 16 15 C 0.09 1.71 6.06 86.47 0.52 2.23 16 16 N -0.59 -17.34 2.73 -795.10 -2.17 -19.51 16 17 C 0.49 15.03 7.68 87.66 0.67 15.70 16 18 O -0.57 -24.98 15.01 -3.04 -0.05 -25.02 16 19 C 0.12 2.13 5.31 85.63 0.45 2.58 16 20 N -0.36 -8.46 3.41 -351.67 -1.20 -9.66 16 21 C 0.08 1.57 11.43 83.54 0.95 2.52 16 22 C -0.20 -4.44 6.65 22.02 0.15 -4.29 16 23 Cl -0.04 -0.76 29.30 -2.72 -0.08 -0.84 16 24 C 0.05 1.26 12.02 85.25 1.02 2.29 16 25 N -0.30 -8.82 11.63 -56.98 -0.66 -9.49 16 26 C 0.13 5.30 3.04 46.08 0.14 5.44 16 27 H 0.05 2.62 6.95 -2.38 -0.02 2.60 16 28 C 0.17 8.63 5.07 86.52 0.44 9.07 16 29 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.04 1.51 7.77 -2.39 -0.02 1.49 16 32 H 0.05 1.43 7.25 -2.39 -0.02 1.41 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.13 0.99 5.81 -2.39 -0.01 0.97 16 37 H 0.07 1.49 7.62 -2.38 -0.02 1.47 16 38 H 0.16 1.54 7.60 -2.39 -0.02 1.52 16 39 H 0.17 1.46 7.87 -2.39 -0.02 1.44 16 40 H 0.22 2.31 8.06 -2.91 -0.02 2.29 16 41 H 0.20 3.96 8.06 -2.91 -0.02 3.93 16 42 H 0.00 0.18 6.96 -2.39 -0.02 0.17 16 43 H 0.05 3.24 5.93 -2.39 -0.01 3.22 16 Total: -1.00 -85.21 357.18 3.33 -81.89 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.03 Total: 8.87 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 6.56 Total: 17.90 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -6.16 Total: -131.40 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.02 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Total: -85.21 3.33 -81.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050153357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.006 kcal (2) G-P(sol) polarization free energy of solvation -85.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds