Wall clock time and date at job start Tue Mar 31 2020 21:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34232 * 126.27703 * 2 1 4 4 H 0.97000 * 125.74599 * 359.97215 * 3 2 1 5 5 N 1.39935 * 108.51867 * 180.02562 * 3 2 1 6 6 C 1.30526 * 108.89537 * 359.75405 * 5 3 2 7 7 Cl 1.73601 * 126.00487 * 180.26673 * 6 5 3 8 8 C 1.38060 * 126.28260 * 180.02562 * 2 1 3 9 9 C 1.47393 * 126.42316 * 359.96156 * 8 2 1 10 10 O 1.21609 * 119.99758 * 89.99743 * 9 8 2 11 11 N 1.34770 * 119.99820 * 270.00287 * 9 8 2 12 12 C 1.47670 * 134.45456 * 179.97438 * 11 9 8 13 13 C 1.53513 * 85.97916 * 204.29212 * 12 11 9 14 14 C 1.47673 * 134.45980 * 359.96680 * 11 9 8 15 15 C 1.52672 * 113.57005 * 91.01447 * 13 12 11 16 16 C 1.53337 * 109.11208 * 73.81958 * 15 13 12 17 17 N 1.46877 * 108.76413 * 52.40169 * 16 15 13 18 18 C 1.36936 * 120.47030 * 124.47541 * 17 16 15 19 19 H 1.08007 * 119.99369 * 332.22095 * 18 17 16 20 20 C 1.38812 * 120.00465 * 152.49153 * 18 17 16 21 21 N 1.31612 * 119.99848 * 159.19595 * 20 18 17 22 22 Si 1.86803 * 119.99869 * 339.20348 * 20 18 17 23 23 H 1.48495 * 109.47198 * 93.79967 * 22 20 18 24 24 H 1.48504 * 109.46729 * 213.80214 * 22 20 18 25 25 H 1.48507 * 109.46956 * 333.79837 * 22 20 18 26 26 C 1.46889 * 119.06794 * 304.74348 * 17 16 15 27 27 C 1.52667 * 113.56474 * 222.23407 * 13 12 11 28 28 H 1.09002 * 109.46748 * 269.99937 * 1 2 3 29 29 H 1.09004 * 109.47290 * 29.99507 * 1 2 3 30 30 H 1.08994 * 109.47034 * 149.99880 * 1 2 3 31 31 H 1.09004 * 113.79090 * 90.02492 * 12 11 9 32 32 H 1.08997 * 113.79057 * 318.55940 * 12 11 9 33 33 H 1.08996 * 113.78642 * 41.43663 * 14 11 9 34 34 H 1.08999 * 113.78663 * 269.96713 * 14 11 9 35 35 H 1.08995 * 109.53421 * 313.92267 * 15 13 12 36 36 H 1.08999 * 109.58868 * 193.74111 * 15 13 12 37 37 H 1.08996 * 109.58400 * 292.61772 * 16 15 13 38 38 H 1.08997 * 109.58777 * 172.18896 * 16 15 13 39 39 H 0.97006 * 120.00218 * 180.02562 * 21 20 18 40 40 H 1.09001 * 109.58860 * 175.04070 * 26 17 16 41 41 H 1.08998 * 109.58980 * 295.47858 * 26 17 16 42 42 H 1.09000 * 109.53113 * 46.07517 * 27 13 12 43 43 H 1.09002 * 109.53124 * 166.29655 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0048 -0.0004 5 7 3.6340 0.6553 -0.0006 6 6 3.6599 -0.6497 0.0044 7 17 5.0842 -1.6421 0.0123 8 6 2.3241 -1.1129 -0.0005 9 6 1.8859 -2.5202 -0.0003 10 8 1.7045 -3.1007 -1.0535 11 7 1.6862 -3.1636 1.1669 12 6 1.2608 -4.5288 1.5357 13 6 0.7950 -3.9092 2.8608 14 6 1.8051 -2.7860 2.5896 15 6 -0.6585 -3.4427 2.8390 16 6 -1.5797 -4.6673 2.8917 17 7 -1.1863 -5.5058 4.0316 18 6 -2.1018 -5.8476 4.9908 19 1 -2.9413 -5.1983 5.1918 20 6 -1.9481 -7.0256 5.7088 21 7 -2.5484 -7.1710 6.8710 22 14 -0.8889 -8.4043 5.0256 23 1 0.4897 -8.2826 5.5638 24 1 -1.4628 -9.7142 5.4259 25 1 -0.8518 -8.3122 3.5438 26 6 0.2045 -5.9677 4.1314 27 6 1.1361 -4.7567 4.0840 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 2.0864 -5.2321 1.6453 32 1 0.4479 -4.9169 0.9220 33 1 1.4247 -1.7894 2.8132 34 1 2.7925 -2.9711 3.0125 35 1 -0.8479 -2.8832 1.9230 36 1 -0.8505 -2.8049 3.7019 37 1 -1.4826 -5.2375 1.9678 38 1 -2.6127 -4.3425 3.0162 39 1 -2.4406 -7.9941 7.3730 40 1 0.3464 -6.4992 5.0724 41 1 0.4299 -6.6314 3.2967 42 1 2.1706 -5.0935 4.0171 43 1 1.0029 -4.1622 4.9878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050541641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:23 Heat of formation + Delta-G solvation = 72.119764 kcal Electronic energy + Delta-G solvation = -27727.622693 eV Core-core repulsion = 23836.434988 eV Total energy + Delta-G solvation = -3891.187706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.69143 -41.69267 -39.38935 -37.98971 -37.63032 -34.30695 -33.76885 -32.82271 -32.09666 -31.84700 -29.08341 -28.12495 -27.26792 -25.71061 -24.41116 -23.28703 -23.09623 -22.45144 -20.18543 -19.49232 -18.84878 -18.28114 -17.73732 -17.21192 -16.89979 -16.56635 -16.38193 -16.28158 -15.86870 -15.36939 -15.10532 -15.04488 -14.66286 -14.28330 -14.21622 -14.09134 -13.88090 -13.62793 -13.36884 -13.22323 -13.16682 -13.03554 -12.90497 -12.83773 -12.47704 -12.19276 -12.07031 -11.94163 -11.58438 -11.44948 -11.36549 -11.25628 -10.87702 -10.59441 -10.56778 -9.92279 -9.70396 -8.84649 -8.11622 -5.42056 0.31843 0.42387 0.95577 1.33394 1.43616 1.46421 1.54475 1.74216 2.05775 2.46120 3.11922 3.30530 3.36523 3.45672 3.58663 3.80231 3.84607 4.00222 4.04789 4.15094 4.42182 4.44427 4.56804 4.57710 4.62258 4.62438 4.68180 4.74367 4.77391 4.82266 4.89429 4.91073 5.03471 5.05449 5.09243 5.21486 5.30969 5.36195 5.55544 5.93935 5.94818 6.18690 6.21272 6.67771 6.99521 7.08242 7.70083 8.09693 9.08448 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.020926 B = 0.003088 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.741353 B = 9064.717633 C = 9649.849296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.166 3.834 3 N -0.427 5.427 4 H 0.467 0.533 5 N -0.294 5.294 6 C 0.149 3.851 7 Cl 0.014 6.986 8 C -0.294 4.294 9 C 0.620 3.380 10 O -0.580 6.580 11 N -0.625 5.625 12 C 0.111 3.889 13 C -0.074 4.074 14 C 0.122 3.878 15 C -0.095 4.095 16 C 0.145 3.855 17 N -0.618 5.618 18 C -0.243 4.243 19 H 0.053 0.947 20 C -0.035 4.035 21 N -0.959 5.959 22 Si 0.943 3.057 23 H -0.272 1.272 24 H -0.317 1.317 25 H -0.262 1.262 26 C 0.120 3.880 27 C -0.110 4.110 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.028 0.972 38 H 0.055 0.945 39 H 0.260 0.740 40 H 0.047 0.953 41 H 0.031 0.969 42 H 0.088 0.912 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.618 18.732 -13.050 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.032 3.968 3 N -0.139 5.139 4 H 0.317 0.683 5 N -0.120 5.120 6 C -0.043 4.043 7 Cl 0.042 6.958 8 C -0.310 4.310 9 C 0.409 3.591 10 O -0.460 6.460 11 N -0.358 5.358 12 C -0.011 4.011 13 C -0.075 4.075 14 C 0.000 4.000 15 C -0.133 4.133 16 C 0.020 3.980 17 N -0.343 5.343 18 C -0.373 4.373 19 H 0.070 0.930 20 C -0.229 4.229 21 N -0.606 5.606 22 Si 0.772 3.228 23 H -0.199 1.199 24 H -0.247 1.247 25 H -0.186 1.186 26 C -0.005 4.005 27 C -0.149 4.149 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.106 0.894 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.373 19.412 -13.697 26.787 hybrid contribution -0.125 -1.590 0.068 1.597 sum 12.248 17.822 -13.629 25.561 Atomic orbital electron populations 1.20827 0.83142 1.05992 1.06046 1.21792 0.96032 0.85057 0.93889 1.45843 1.01830 1.09524 1.56659 0.68289 1.77090 0.98343 1.10199 1.26345 1.22600 0.88683 0.90829 1.02216 1.98413 1.35540 1.65053 1.96784 1.19677 0.91676 0.94031 1.25567 1.16931 0.75549 0.84781 0.81821 1.90773 1.53816 1.69258 1.32140 1.50029 1.65673 1.14476 1.05601 1.23378 0.99042 0.85111 0.93566 1.21868 0.95920 0.95862 0.93843 1.23431 0.99682 0.99753 0.77127 1.21585 0.92145 0.97535 1.02073 1.21065 0.97359 0.91159 0.88437 1.44441 1.05123 1.59935 1.24752 1.18879 1.05884 1.01862 1.10652 0.92970 1.25865 1.00369 0.99828 0.96879 1.69964 1.49590 1.27558 1.13449 0.85965 0.78369 0.78822 0.79610 1.19879 1.24652 1.18621 1.21288 0.84371 0.96070 0.98724 1.21745 0.99188 0.96606 0.97383 0.86923 0.86687 0.90173 0.88716 0.90968 0.88510 0.87962 0.90347 0.91267 0.95391 0.92621 0.93125 0.93445 0.95082 0.89366 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.25 71.24 0.73 -0.13 16 2 C 0.17 2.48 7.29 42.15 0.31 2.79 16 3 N -0.43 -5.38 7.28 -46.79 -0.34 -5.72 16 4 H 0.47 1.93 8.96 -213.43 -1.91 0.02 16 5 N -0.29 -5.96 12.64 -48.96 -0.62 -6.58 16 6 C 0.15 3.41 7.89 85.66 0.68 4.09 16 7 Cl 0.01 0.32 29.19 -2.72 -0.08 0.24 16 8 C -0.29 -6.60 5.62 -20.13 -0.11 -6.71 16 9 C 0.62 16.89 7.40 86.66 0.64 17.53 16 10 O -0.58 -20.65 17.83 -4.06 -0.07 -20.72 16 11 N -0.62 -14.71 3.44 -846.39 -2.91 -17.62 16 12 C 0.11 2.75 7.62 86.32 0.66 3.41 16 13 C -0.07 -1.75 0.77 -52.04 -0.04 -1.79 16 14 C 0.12 2.27 7.72 86.31 0.67 2.94 16 15 C -0.09 -2.44 5.21 30.60 0.16 -2.28 16 16 C 0.14 5.03 6.38 86.42 0.55 5.59 16 17 N -0.62 -26.93 2.74 -699.68 -1.92 -28.84 16 18 C -0.24 -13.21 10.01 84.03 0.84 -12.37 16 19 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 20 C -0.03 -1.99 5.23 84.86 0.44 -1.55 16 21 N -0.96 -59.26 13.97 21.65 0.30 -58.96 16 22 Si 0.94 45.50 24.38 68.60 1.67 47.17 16 23 H -0.27 -12.26 6.65 99.48 0.66 -11.60 16 24 H -0.32 -15.85 7.11 99.48 0.71 -15.15 16 25 H -0.26 -12.11 6.65 99.48 0.66 -11.45 16 26 C 0.12 4.60 4.06 86.26 0.35 4.95 16 27 C -0.11 -3.04 5.24 30.44 0.16 -2.88 16 28 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.08 1.02 7.96 -2.39 -0.02 1.00 16 31 H 0.09 2.17 8.07 -2.38 -0.02 2.15 16 32 H 0.07 1.99 7.41 -2.39 -0.02 1.97 16 33 H 0.10 1.50 8.09 -2.39 -0.02 1.48 16 34 H 0.10 1.65 8.09 -2.39 -0.02 1.63 16 35 H 0.08 1.71 8.01 -2.39 -0.02 1.69 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.03 0.96 7.49 -2.39 -0.02 0.94 16 38 H 0.06 2.01 7.92 -2.39 -0.02 1.99 16 39 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 40 H 0.05 2.07 4.39 -2.39 -0.01 2.06 16 41 H 0.03 1.16 7.12 -2.39 -0.02 1.15 16 42 H 0.09 1.97 8.12 -2.39 -0.02 1.95 16 43 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -76.46 363.16 1.11 -75.35 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -0.95 Total: 2.08 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 6.03 Total: 13.59 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -5.49 Total: -117.72 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.07 Total: -20.72 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.67 Total: 47.17 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -0.08 Total: 0.24 kcal Total: -76.46 1.11 -75.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050541641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.472 kcal (2) G-P(sol) polarization free energy of solvation -76.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds