Wall clock time and date at job start Tue Mar 31 2020 21:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99692 * 2 1 4 4 H 1.48505 * 109.47006 * 239.99875 * 3 2 1 5 5 H 1.48493 * 109.47372 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46864 * 120.00456 * 3 2 1 7 7 C 1.38813 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99943 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99696 * 359.97438 * 7 2 1 10 10 C 1.47486 * 125.66693 * 359.97196 * 9 7 2 11 11 C 1.55025 * 104.90623 * 204.03337 * 10 9 7 12 12 C 1.54471 * 101.53514 * 323.65900 * 11 10 9 13 13 C 1.47188 * 125.66021 * 180.02562 * 9 7 2 14 14 C 1.52237 * 110.29794 * 153.34401 * 12 11 10 15 15 C 1.53168 * 109.65256 * 182.00609 * 14 12 11 16 16 C 1.53188 * 109.27294 * 299.82437 * 15 14 12 17 17 N 1.46931 * 108.93050 * 55.21443 * 16 15 14 18 18 C 1.34781 * 120.70027 * 125.84175 * 17 16 15 19 19 O 1.21735 * 120.00174 * 4.26108 * 18 17 16 20 20 C 1.46289 * 119.99884 * 183.98106 * 18 17 16 21 21 S 1.75828 * 125.46695 * 310.90547 * 20 18 17 22 22 C 1.70597 * 91.60771 * 179.91321 * 21 20 18 23 23 C 1.33736 * 111.03916 * 0.35498 * 22 21 20 24 24 C 1.36931 * 125.46660 * 131.20896 * 20 18 17 25 25 F 1.35106 * 123.40089 * 359.97438 * 24 20 18 26 26 C 1.47076 * 118.60107 * 306.11865 * 17 16 15 27 27 H 0.96998 * 120.00026 * 359.97438 * 1 2 3 28 28 H 1.08997 * 110.35120 * 322.89547 * 10 9 7 29 29 H 1.09002 * 110.34768 * 85.06939 * 10 9 7 30 30 H 1.09005 * 111.01329 * 205.59562 * 11 10 9 31 31 H 1.08999 * 111.01281 * 81.72322 * 11 10 9 32 32 H 1.08993 * 109.91400 * 59.07022 * 13 9 7 33 33 H 1.09007 * 109.90554 * 297.80689 * 13 9 7 34 34 H 1.08999 * 109.44270 * 61.94323 * 14 12 11 35 35 H 1.09008 * 109.40767 * 302.04272 * 14 12 11 36 36 H 1.09001 * 109.50480 * 179.88717 * 15 14 12 37 37 H 1.08994 * 109.50416 * 59.76584 * 15 14 12 38 38 H 1.09002 * 109.55943 * 295.38281 * 16 15 14 39 39 H 1.08997 * 109.64824 * 175.10581 * 16 15 14 40 40 H 1.08003 * 124.48402 * 180.02562 * 22 21 20 41 41 H 1.08003 * 122.45266 * 179.70575 * 23 22 21 42 42 H 1.08993 * 109.58769 * 171.98362 * 26 17 16 43 43 H 1.09001 * 109.57513 * 292.38061 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1421 -2.5336 0.0006 11 6 -0.4035 -3.9348 0.6103 12 6 0.7806 -4.7459 0.0391 13 6 1.9321 -3.7291 -0.0005 14 6 1.1198 -5.9072 0.9631 15 6 2.3262 -6.6710 0.4090 16 6 1.9858 -7.2129 -0.9828 17 7 1.5498 -6.0981 -1.8349 18 6 2.1436 -5.8666 -3.0225 19 8 2.9978 -6.6295 -3.4349 20 6 1.7572 -4.7017 -3.8186 21 16 0.1077 -4.2349 -4.2096 22 6 0.6494 -2.8761 -5.0875 23 6 1.9847 -2.8016 -5.0814 24 6 2.6223 -3.8033 -4.3839 25 9 3.9656 -3.8906 -4.2685 26 6 0.4558 -5.2365 -1.3617 27 1 -0.4850 0.8400 0.0004 28 1 -0.5993 -1.7602 0.6178 29 1 -0.5288 -2.4831 -1.0173 30 1 -1.3558 -4.3389 0.2670 31 1 -0.3648 -3.9006 1.6990 32 1 2.5650 -3.8503 0.8785 33 1 2.5207 -3.8702 -0.9071 34 1 0.2643 -6.5794 1.0301 35 1 1.3579 -5.5232 1.9551 36 1 2.5682 -7.5006 1.0733 37 1 3.1814 -5.9990 0.3387 38 1 1.1836 -7.9464 -0.9027 39 1 2.8675 -7.6825 -1.4190 40 1 0.0001 -2.1723 -5.5871 41 1 2.5235 -2.0138 -5.5868 42 1 0.3479 -4.3826 -2.0305 43 1 -0.4737 -5.8053 -1.3398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054126078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:55 Heat of formation + Delta-G solvation = -10.820196 kcal Electronic energy + Delta-G solvation = -28961.797207 eV Core-core repulsion = 25049.136699 eV Total energy + Delta-G solvation = -3912.660508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.70676 -40.43452 -38.47705 -37.14396 -35.65406 -33.11730 -32.40860 -30.22126 -29.64145 -28.33422 -25.83783 -25.68601 -24.56267 -23.80579 -22.11249 -20.70713 -20.02295 -19.57979 -18.51140 -17.89141 -16.91015 -16.76787 -16.41227 -15.58167 -15.30658 -15.15032 -14.85587 -14.49002 -14.40624 -14.04712 -13.90366 -13.57775 -13.38104 -13.03509 -12.99477 -12.56251 -12.47828 -12.21987 -12.05681 -11.71710 -11.54769 -11.22647 -11.08935 -11.02493 -10.89168 -10.84756 -10.73707 -10.21411 -10.16071 -9.99607 -9.78071 -9.73012 -9.48447 -8.83726 -8.64424 -8.49947 -8.28286 -6.82386 -5.65654 -3.05903 0.54536 1.30788 1.79202 2.35399 2.80282 3.21246 3.39588 3.43942 3.45299 4.38651 4.48330 4.53175 4.86359 4.97264 5.04281 5.07289 5.13334 5.29571 5.33688 5.46260 5.52841 5.57286 5.66554 5.71417 5.80323 5.84558 5.88211 5.94452 5.97731 6.01733 6.23601 6.32495 6.36270 6.39214 6.53719 6.56720 6.64379 6.77465 6.89187 7.39109 7.47496 7.63032 7.84094 8.16704 8.35565 9.22780 9.83298 10.48503 11.38233 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009932 B = 0.006048 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.540450 B = 4628.437287 C = 6026.217035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.217 4.217 8 H 0.074 0.926 9 N -0.601 5.601 10 C 0.153 3.847 11 C -0.135 4.135 12 C -0.085 4.085 13 C 0.152 3.848 14 C -0.101 4.101 15 C -0.136 4.136 16 C 0.115 3.885 17 N -0.598 5.598 18 C 0.601 3.399 19 O -0.532 6.532 20 C -0.312 4.312 21 S 0.267 5.733 22 C -0.212 4.212 23 C -0.171 4.171 24 C 0.158 3.842 25 F -0.113 7.113 26 C 0.112 3.888 27 H 0.251 0.749 28 H 0.106 0.894 29 H 0.011 0.989 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.017 0.983 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.179 0.821 41 H 0.156 0.844 42 H 0.097 0.903 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 -11.650 -5.454 13.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.346 4.346 8 H 0.091 0.909 9 N -0.327 5.327 10 C 0.028 3.972 11 C -0.174 4.174 12 C -0.086 4.086 13 C 0.026 3.974 14 C -0.139 4.139 15 C -0.174 4.174 16 C -0.007 4.007 17 N -0.330 5.330 18 C 0.388 3.612 19 O -0.410 6.410 20 C -0.433 4.433 21 S 0.533 5.467 22 C -0.350 4.350 23 C -0.202 4.202 24 C 0.124 3.876 25 F -0.091 7.091 26 C -0.011 4.011 27 H 0.062 0.938 28 H 0.124 0.876 29 H 0.029 0.971 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.196 0.804 41 H 0.174 0.826 42 H 0.115 0.885 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.439 -12.419 -5.366 14.238 hybrid contribution 2.161 1.790 -0.311 2.824 sum -2.278 -10.629 -5.678 12.263 Atomic orbital electron populations 1.69774 1.04739 1.24707 1.57952 1.24711 0.95683 0.97446 1.02638 0.86223 0.78484 0.83309 0.77942 1.21302 1.21563 1.21229 1.19000 0.90391 0.82510 1.42658 0.90852 1.44520 1.01803 0.99610 1.86780 1.21946 0.84778 0.92446 0.98035 1.23014 0.95232 0.98757 1.00382 1.21251 0.98449 0.95263 0.93647 1.21199 0.93094 0.85435 0.97658 1.21411 0.97323 0.96342 0.98814 1.21969 0.99460 1.00476 0.95536 1.21601 1.00890 0.87887 0.90301 1.47976 1.36229 1.30829 1.18011 1.16689 0.80982 0.83055 0.80518 1.90812 1.32618 1.46789 1.70816 1.24326 0.99028 1.05513 1.14399 1.83007 1.01854 1.18037 1.43777 1.25098 0.99321 1.04554 1.06037 1.19753 0.94448 1.01151 1.04872 1.16732 0.77945 0.95013 0.97903 1.91535 1.27923 1.95680 1.93979 1.21946 0.88130 0.94340 0.96694 0.93802 0.87650 0.97128 0.92160 0.91588 0.95951 0.96478 0.91992 0.91285 0.90823 0.91096 0.91405 0.89129 0.80396 0.82643 0.88494 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.95 10.09 55.49 0.56 -25.39 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.22 -5.99 10.28 -15.06 -0.15 -6.14 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.91 3.40 -170.23 -0.58 -15.49 16 10 C 0.15 3.47 5.58 -2.43 -0.01 3.46 16 11 C -0.13 -2.33 5.99 -24.89 -0.15 -2.48 16 12 C -0.08 -1.38 0.54 -154.32 -0.08 -1.47 16 13 C 0.15 3.18 5.42 -3.32 -0.02 3.16 16 14 C -0.10 -1.34 4.52 -27.03 -0.12 -1.46 16 15 C -0.14 -1.70 5.92 -26.55 -0.16 -1.86 16 16 C 0.12 1.50 6.41 -3.71 -0.02 1.48 16 17 N -0.60 -9.29 2.61 -175.09 -0.46 -9.74 16 18 C 0.60 10.72 7.45 -13.02 -0.10 10.63 16 19 O -0.53 -10.77 16.54 5.16 0.09 -10.68 16 20 C -0.31 -5.27 5.33 -36.82 -0.20 -5.47 16 21 S 0.27 3.52 20.21 -107.50 -2.17 1.34 16 22 C -0.21 -2.72 10.91 29.15 0.32 -2.40 16 23 C -0.17 -2.49 10.15 -41.35 -0.42 -2.91 16 24 C 0.16 2.76 7.50 -40.25 -0.30 2.46 16 25 F -0.11 -2.14 17.23 2.25 0.04 -2.10 16 26 C 0.11 1.70 4.31 -4.27 -0.02 1.68 16 27 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.11 2.74 5.88 -51.93 -0.31 2.43 16 29 H 0.01 0.25 7.91 -51.93 -0.41 -0.16 16 30 H 0.06 0.89 7.98 -51.93 -0.41 0.47 16 31 H 0.07 1.14 8.02 -51.93 -0.42 0.72 16 32 H 0.02 0.48 7.61 -51.93 -0.40 0.09 16 33 H 0.02 0.39 7.54 -51.92 -0.39 0.00 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.94 8.11 -51.92 -0.42 0.52 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.03 7.28 -51.93 -0.38 0.66 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.25 7.02 -51.93 -0.36 0.89 16 40 H 0.18 1.72 8.06 -52.48 -0.42 1.30 16 41 H 0.16 1.93 8.06 -52.48 -0.42 1.51 16 42 H 0.10 1.62 3.86 -36.24 -0.14 1.48 16 43 H 0.07 0.89 8.10 -51.93 -0.42 0.46 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -32.11 352.72 -9.48 -41.59 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.72 Total: -0.10 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.53 Total: -1.69 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.48 Total: -50.63 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -2.17 Total: 1.34 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.11 -9.48 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054126078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.774 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds