Wall clock time and date at job start Tue Mar 31 2020 21:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99692 * 2 1 4 4 H 1.48505 * 109.47006 * 239.99875 * 3 2 1 5 5 H 1.48493 * 109.47372 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46864 * 120.00456 * 3 2 1 7 7 C 1.38813 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99943 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99696 * 359.97438 * 7 2 1 10 10 C 1.47486 * 125.66693 * 359.97196 * 9 7 2 11 11 C 1.55025 * 104.90623 * 204.03337 * 10 9 7 12 12 C 1.54471 * 101.53514 * 323.65900 * 11 10 9 13 13 C 1.47188 * 125.66021 * 180.02562 * 9 7 2 14 14 C 1.52237 * 110.29794 * 153.34401 * 12 11 10 15 15 C 1.53168 * 109.65256 * 182.00609 * 14 12 11 16 16 C 1.53188 * 109.27294 * 299.82437 * 15 14 12 17 17 N 1.46931 * 108.93050 * 55.21443 * 16 15 14 18 18 C 1.34781 * 120.70027 * 125.84175 * 17 16 15 19 19 O 1.21735 * 120.00174 * 4.26108 * 18 17 16 20 20 C 1.46289 * 119.99884 * 183.98106 * 18 17 16 21 21 S 1.75828 * 125.46695 * 310.90547 * 20 18 17 22 22 C 1.70597 * 91.60771 * 179.91321 * 21 20 18 23 23 C 1.33736 * 111.03916 * 0.35498 * 22 21 20 24 24 C 1.36931 * 125.46660 * 131.20896 * 20 18 17 25 25 F 1.35106 * 123.40089 * 359.97438 * 24 20 18 26 26 C 1.47076 * 118.60107 * 306.11865 * 17 16 15 27 27 H 0.96998 * 120.00026 * 359.97438 * 1 2 3 28 28 H 1.08997 * 110.35120 * 322.89547 * 10 9 7 29 29 H 1.09002 * 110.34768 * 85.06939 * 10 9 7 30 30 H 1.09005 * 111.01329 * 205.59562 * 11 10 9 31 31 H 1.08999 * 111.01281 * 81.72322 * 11 10 9 32 32 H 1.08993 * 109.91400 * 59.07022 * 13 9 7 33 33 H 1.09007 * 109.90554 * 297.80689 * 13 9 7 34 34 H 1.08999 * 109.44270 * 61.94323 * 14 12 11 35 35 H 1.09008 * 109.40767 * 302.04272 * 14 12 11 36 36 H 1.09001 * 109.50480 * 179.88717 * 15 14 12 37 37 H 1.08994 * 109.50416 * 59.76584 * 15 14 12 38 38 H 1.09002 * 109.55943 * 295.38281 * 16 15 14 39 39 H 1.08997 * 109.64824 * 175.10581 * 16 15 14 40 40 H 1.08003 * 124.48402 * 180.02562 * 22 21 20 41 41 H 1.08003 * 122.45266 * 179.70575 * 23 22 21 42 42 H 1.08993 * 109.58769 * 171.98362 * 26 17 16 43 43 H 1.09001 * 109.57513 * 292.38061 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1421 -2.5336 0.0006 11 6 -0.4035 -3.9348 0.6103 12 6 0.7806 -4.7459 0.0391 13 6 1.9321 -3.7291 -0.0005 14 6 1.1198 -5.9072 0.9631 15 6 2.3262 -6.6710 0.4090 16 6 1.9858 -7.2129 -0.9828 17 7 1.5498 -6.0981 -1.8349 18 6 2.1436 -5.8666 -3.0225 19 8 2.9978 -6.6295 -3.4349 20 6 1.7572 -4.7017 -3.8186 21 16 0.1077 -4.2349 -4.2096 22 6 0.6494 -2.8761 -5.0875 23 6 1.9847 -2.8016 -5.0814 24 6 2.6223 -3.8033 -4.3839 25 9 3.9656 -3.8906 -4.2685 26 6 0.4558 -5.2365 -1.3617 27 1 -0.4850 0.8400 0.0004 28 1 -0.5993 -1.7602 0.6178 29 1 -0.5288 -2.4831 -1.0173 30 1 -1.3558 -4.3389 0.2670 31 1 -0.3648 -3.9006 1.6990 32 1 2.5650 -3.8503 0.8785 33 1 2.5207 -3.8702 -0.9071 34 1 0.2643 -6.5794 1.0301 35 1 1.3579 -5.5232 1.9551 36 1 2.5682 -7.5006 1.0733 37 1 3.1814 -5.9990 0.3387 38 1 1.1836 -7.9464 -0.9027 39 1 2.8675 -7.6825 -1.4190 40 1 0.0001 -2.1723 -5.5871 41 1 2.5235 -2.0138 -5.5868 42 1 0.3479 -4.3826 -2.0305 43 1 -0.4737 -5.8053 -1.3398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054126078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:54 Heat of formation + Delta-G solvation = -29.594410 kcal Electronic energy + Delta-G solvation = -28962.611318 eV Core-core repulsion = 25049.136699 eV Total energy + Delta-G solvation = -3913.474619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.08318 -41.72604 -39.89455 -38.32734 -37.17318 -34.72495 -33.78544 -31.92716 -30.89387 -29.86167 -27.49819 -27.00200 -25.83468 -25.26198 -23.38489 -22.20775 -21.49057 -20.84249 -19.79149 -19.11982 -18.84085 -18.03292 -17.74553 -16.92091 -16.86006 -16.50134 -16.40965 -15.91813 -15.67097 -15.61581 -15.06363 -14.86351 -14.85850 -14.34236 -14.17268 -14.03302 -13.92480 -13.67232 -13.37485 -13.23953 -12.95546 -12.88559 -12.75911 -12.49741 -12.26626 -12.14902 -12.03036 -11.93486 -11.80030 -11.60226 -11.36633 -11.15497 -10.99224 -10.69782 -10.04758 -9.69149 -9.39342 -8.83251 -7.75118 -5.17161 -0.63971 0.16751 0.69631 1.16273 1.44323 1.45292 1.51954 1.52050 1.99569 2.49035 3.22345 3.29382 3.32561 3.65757 3.72511 3.77581 3.91190 3.96065 4.07879 4.18689 4.28433 4.33232 4.44171 4.54143 4.61998 4.66054 4.74981 4.79190 4.83292 4.84218 4.87798 4.96271 5.13746 5.15529 5.17884 5.21256 5.39576 5.43342 5.45745 5.50445 5.74354 5.88477 6.13956 6.36949 6.87370 7.16164 7.82204 8.45718 9.25181 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009932 B = 0.006048 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.540450 B = 4628.437287 C = 6026.217035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.965 3.035 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.238 4.238 8 H 0.061 0.939 9 N -0.620 5.620 10 C 0.154 3.846 11 C -0.118 4.118 12 C -0.074 4.074 13 C 0.155 3.845 14 C -0.096 4.096 15 C -0.130 4.130 16 C 0.110 3.890 17 N -0.593 5.593 18 C 0.592 3.408 19 O -0.570 6.570 20 C -0.345 4.345 21 S 0.329 5.671 22 C -0.206 4.206 23 C -0.190 4.190 24 C 0.124 3.876 25 F -0.134 7.134 26 C 0.110 3.890 27 H 0.248 0.752 28 H 0.071 0.929 29 H -0.002 1.002 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.011 0.989 33 H -0.009 1.009 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.038 0.962 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.215 0.785 41 H 0.171 0.829 42 H 0.079 0.921 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.883 -12.942 -4.917 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.246 4.246 3 Si 0.794 3.206 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.367 4.367 8 H 0.079 0.921 9 N -0.345 5.345 10 C 0.030 3.970 11 C -0.157 4.157 12 C -0.075 4.075 13 C 0.030 3.970 14 C -0.133 4.133 15 C -0.168 4.168 16 C -0.011 4.011 17 N -0.324 5.324 18 C 0.380 3.620 19 O -0.451 6.451 20 C -0.466 4.466 21 S 0.596 5.404 22 C -0.344 4.344 23 C -0.220 4.220 24 C 0.089 3.911 25 F -0.113 7.113 26 C -0.013 4.013 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.015 0.985 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.029 0.971 33 H 0.009 0.991 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.057 0.943 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.232 0.768 41 H 0.188 0.812 42 H 0.097 0.903 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.865 -13.731 -4.800 16.084 hybrid contribution 2.892 2.223 -0.465 3.677 sum -3.973 -11.508 -5.266 13.264 Atomic orbital electron populations 1.69994 1.05486 1.24925 1.58233 1.25363 0.96582 0.99935 1.02714 0.85360 0.77445 0.79974 0.77792 1.21221 1.21159 1.20891 1.19187 0.90290 0.84292 1.42964 0.92119 1.44774 1.03049 1.00165 1.86561 1.21786 0.83256 0.94995 0.96985 1.22887 0.97316 0.95190 1.00295 1.21205 0.95773 0.95128 0.95399 1.21251 0.94658 0.85385 0.95734 1.21412 0.98889 0.95502 0.97526 1.21942 0.98062 1.00901 0.95921 1.21851 1.01757 0.87710 0.89744 1.48087 1.35836 1.31112 1.17387 1.16934 0.80701 0.83018 0.81329 1.90772 1.34226 1.48231 1.71906 1.24594 1.01458 1.05592 1.14947 1.82633 0.98664 1.16999 1.42110 1.25622 0.99092 1.04781 1.04884 1.19927 0.95332 1.01266 1.05503 1.17300 0.77403 0.96747 0.99662 1.91461 1.29536 1.95956 1.94342 1.22044 0.89470 0.94499 0.95270 0.94202 0.91109 0.98453 0.88231 0.91266 0.97065 0.99060 0.88189 0.91550 0.87424 0.94327 0.87681 0.90512 0.76848 0.81196 0.90288 0.87031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.29 10.09 21.65 0.22 -53.07 16 2 C -0.05 -2.93 5.49 84.86 0.47 -2.47 16 3 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.24 -13.51 10.28 84.03 0.86 -12.65 16 8 H 0.06 3.48 7.83 -2.91 -0.02 3.46 16 9 N -0.62 -31.32 3.40 -692.47 -2.36 -33.67 16 10 C 0.15 6.95 5.58 86.88 0.48 7.44 16 11 C -0.12 -3.74 5.99 31.79 0.19 -3.55 16 12 C -0.07 -2.23 0.54 -52.06 -0.03 -2.26 16 13 C 0.16 6.57 5.42 86.47 0.47 7.04 16 14 C -0.10 -2.17 4.52 30.40 0.14 -2.03 16 15 C -0.13 -2.92 5.92 30.71 0.18 -2.74 16 16 C 0.11 2.61 6.41 86.36 0.55 3.16 16 17 N -0.59 -17.57 2.61 -826.05 -2.15 -19.73 16 18 C 0.59 21.43 7.45 86.34 0.64 22.07 16 19 O -0.57 -23.90 16.54 -4.46 -0.07 -23.98 16 20 C -0.34 -11.85 5.33 24.06 0.13 -11.72 16 21 S 0.33 8.13 20.21 -56.49 -1.14 6.99 16 22 C -0.21 -4.95 10.91 66.80 0.73 -4.22 16 23 C -0.19 -5.57 10.15 21.12 0.21 -5.36 16 24 C 0.12 4.52 7.50 21.84 0.16 4.68 16 25 F -0.13 -5.50 17.23 44.97 0.77 -4.73 16 26 C 0.11 3.02 4.31 85.92 0.37 3.39 16 27 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 28 H 0.07 3.71 5.88 -2.39 -0.01 3.70 16 29 H 0.00 -0.12 7.91 -2.39 -0.02 -0.14 16 30 H 0.10 2.42 7.98 -2.38 -0.02 2.40 16 31 H 0.07 2.18 8.02 -2.39 -0.02 2.16 16 32 H 0.01 0.50 7.61 -2.39 -0.02 0.48 16 33 H -0.01 -0.40 7.54 -2.38 -0.02 -0.42 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.59 8.11 -2.38 -0.02 1.57 16 36 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 1.11 7.28 -2.39 -0.02 1.09 16 38 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16 39 H 0.08 2.06 7.02 -2.39 -0.02 2.05 16 40 H 0.21 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.17 4.27 8.06 -2.91 -0.02 4.24 16 42 H 0.08 2.50 3.86 -12.37 -0.05 2.45 16 43 H 0.11 2.22 8.10 -2.39 -0.02 2.20 16 Total: -1.00 -74.54 352.72 3.86 -70.68 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.99 Total: 8.99 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.57 Total: 0.78 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -4.29 Total: -106.47 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.07 Total: -23.98 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.77 Total: -4.73 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 16 Polarization: 8.13 SS G_CDS: -1.14 Total: 6.99 kcal Total: -74.54 3.86 -70.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054126078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.086 kcal (2) G-P(sol) polarization free energy of solvation -74.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds