Wall clock time and date at job start Tue Mar 31 2020 20:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99745 * 2 1 4 4 H 1.48501 * 109.47249 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47497 * 300.00550 * 3 2 1 6 6 H 1.48500 * 109.46943 * 60.00273 * 3 2 1 7 7 C 1.38813 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99614 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.47483 * 125.66299 * 359.97268 * 9 7 2 11 11 C 1.55032 * 104.90678 * 204.03491 * 10 9 7 12 12 C 1.54488 * 101.52629 * 323.65878 * 11 10 9 13 13 C 1.47189 * 125.66092 * 179.97438 * 9 7 2 14 14 C 1.52245 * 110.28158 * 276.20454 * 12 11 10 15 15 C 1.53168 * 109.64640 * 178.01094 * 14 12 11 16 16 C 1.53191 * 109.27602 * 60.17395 * 15 14 12 17 17 N 1.46929 * 108.92892 * 304.77541 * 16 15 14 18 18 C 1.34770 * 120.70493 * 234.13925 * 17 16 15 19 19 O 1.21732 * 120.00029 * 356.42937 * 18 17 16 20 20 C 1.46350 * 119.99937 * 176.42483 * 18 17 16 21 21 C 1.36733 * 125.43515 * 224.13900 * 20 18 17 22 22 C 1.37351 * 113.32867 * 179.83894 * 21 20 18 23 23 C 1.34210 * 115.04524 * 0.45446 * 22 21 20 24 24 F 1.35097 * 124.53881 * 179.78871 * 23 22 21 25 25 S 1.70616 * 110.91637 * 359.74822 * 23 22 21 26 26 C 1.47083 * 118.58968 * 54.16489 * 17 16 15 27 27 H 0.96998 * 120.00453 * 359.97438 * 1 2 3 28 28 H 1.09000 * 110.35382 * 322.88659 * 10 9 7 29 29 H 1.08999 * 110.35701 * 85.07297 * 10 9 7 30 30 H 1.08991 * 111.01635 * 205.59434 * 11 10 9 31 31 H 1.09006 * 111.01080 * 81.70918 * 11 10 9 32 32 H 1.08999 * 109.91098 * 59.07871 * 13 9 7 33 33 H 1.08999 * 109.90763 * 297.81185 * 13 9 7 34 34 H 1.08999 * 109.44144 * 298.06394 * 14 12 11 35 35 H 1.08998 * 109.44375 * 57.99118 * 14 12 11 36 36 H 1.09006 * 109.50216 * 180.10919 * 15 14 12 37 37 H 1.08996 * 109.50644 * 300.23284 * 15 14 12 38 38 H 1.09001 * 109.56579 * 64.61439 * 16 15 14 39 39 H 1.09004 * 109.55805 * 184.94307 * 16 15 14 40 40 H 1.07997 * 123.33591 * 359.97438 * 21 20 18 41 41 H 1.08001 * 122.47706 * 180.17890 * 22 21 20 42 42 H 1.09003 * 109.57755 * 187.73800 * 26 17 16 43 43 H 1.08996 * 109.58181 * 67.34594 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 -0.1420 -2.5336 -0.0017 11 6 -0.4038 -3.9351 0.6072 12 6 0.7810 -4.7459 0.0365 13 6 1.9323 -3.7291 -0.0028 14 6 0.4538 -5.2430 -1.3649 15 6 1.6556 -6.0018 -1.9357 16 6 1.9726 -7.1989 -1.0339 17 7 2.1746 -6.7201 0.3404 18 6 3.3018 -7.0207 1.0151 19 8 4.1369 -7.7491 0.5113 20 6 3.5220 -6.4712 2.3536 21 6 4.6951 -5.9350 2.8073 22 6 4.6237 -5.4893 4.1045 23 6 3.4335 -5.6628 4.7001 24 9 3.1527 -5.2997 5.9707 25 16 2.3225 -6.4023 3.6372 26 6 1.1203 -5.9062 0.9643 27 1 -0.4851 0.8400 0.0004 28 1 -0.5997 -1.7606 0.6157 29 1 -0.5280 -2.4828 -1.0198 30 1 -1.3557 -4.3392 0.2632 31 1 -0.3657 -3.9015 1.6961 32 1 2.5651 -3.8511 0.8763 33 1 2.5210 -3.8694 -0.9094 34 1 -0.4083 -5.9085 -1.3217 35 1 0.2239 -4.3927 -2.0070 36 1 1.4196 -6.3550 -2.9396 37 1 2.5192 -5.3381 -1.9764 38 1 1.1410 -7.9033 -1.0565 39 1 2.8793 -7.6910 -1.3859 40 1 5.5887 -5.8666 2.2047 41 1 5.4644 -5.0370 4.6095 42 1 1.4751 -5.5185 1.9192 43 1 0.2325 -6.5182 1.1236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054246711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:25 Heat of formation + Delta-G solvation = -7.499631 kcal Electronic energy + Delta-G solvation = -28203.371838 eV Core-core repulsion = 24290.855321 eV Total energy + Delta-G solvation = -3912.516517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.20989 -40.56152 -38.72979 -37.46687 -35.72663 -33.08439 -32.43034 -30.25181 -29.50242 -28.46065 -25.98670 -25.71025 -24.62924 -23.72848 -22.41610 -20.92160 -20.18031 -19.72963 -18.71598 -17.98006 -17.07087 -16.84114 -16.52589 -16.10944 -15.74460 -15.28865 -14.95867 -14.67445 -14.61742 -14.23799 -13.92168 -13.70040 -13.33156 -13.22645 -13.00028 -12.84452 -12.44520 -12.17317 -12.07207 -11.99124 -11.58713 -11.33500 -11.07965 -10.99203 -10.93294 -10.86109 -10.67528 -10.31484 -10.14024 -9.99583 -9.91007 -9.76040 -9.51442 -8.89288 -8.73599 -8.66631 -8.55047 -6.83317 -5.66882 -3.07620 0.25130 0.80953 1.36954 2.15777 2.71495 3.08471 3.38296 3.44414 3.46421 4.15341 4.36219 4.47928 4.78220 4.96555 5.03828 5.09494 5.12140 5.15171 5.25032 5.40957 5.47824 5.52116 5.59985 5.68438 5.69842 5.78500 5.79273 5.87887 5.98390 6.01561 6.03029 6.25665 6.32557 6.41512 6.46931 6.54354 6.62859 6.77526 6.88740 7.27494 7.49000 7.62109 7.83821 8.00741 8.34697 9.21358 9.82116 10.47132 11.37186 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010006 B = 0.004770 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.695142 B = 5868.216842 C = 7398.299758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.219 4.219 8 H 0.076 0.924 9 N -0.602 5.602 10 C 0.155 3.845 11 C -0.136 4.136 12 C -0.083 4.083 13 C 0.152 3.848 14 C -0.100 4.100 15 C -0.137 4.137 16 C 0.116 3.884 17 N -0.598 5.598 18 C 0.596 3.404 19 O -0.532 6.532 20 C -0.255 4.255 21 C -0.042 4.042 22 C -0.177 4.177 23 C -0.034 4.034 24 F -0.100 7.100 25 S 0.239 5.761 26 C 0.110 3.890 27 H 0.251 0.749 28 H 0.105 0.895 29 H 0.012 0.988 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.017 0.983 33 H 0.024 0.976 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.088 0.912 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -15.634 4.603 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.347 4.347 8 H 0.094 0.906 9 N -0.328 5.328 10 C 0.030 3.970 11 C -0.175 4.175 12 C -0.084 4.084 13 C 0.026 3.974 14 C -0.137 4.137 15 C -0.175 4.175 16 C -0.006 4.006 17 N -0.330 5.330 18 C 0.383 3.617 19 O -0.410 6.410 20 C -0.375 4.375 21 C -0.074 4.074 22 C -0.210 4.210 23 C -0.171 4.171 24 F -0.079 7.079 25 S 0.504 5.496 26 C -0.014 4.014 27 H 0.062 0.938 28 H 0.123 0.877 29 H 0.030 0.970 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.178 0.822 41 H 0.175 0.825 42 H 0.106 0.894 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.529 -16.226 4.540 16.857 hybrid contribution 1.884 1.633 0.272 2.508 sum 2.414 -14.592 4.812 15.554 Atomic orbital electron populations 1.69797 1.04832 1.24595 1.57904 1.24753 0.95703 0.97608 1.02569 0.86040 0.78712 0.83770 0.77260 1.20571 1.21766 1.21752 1.19104 0.90473 0.82487 1.42676 0.90628 1.44547 1.01873 0.99641 1.86779 1.21919 0.84717 0.92194 0.98156 1.23015 0.95393 0.99010 1.00054 1.21337 0.98240 0.93957 0.94868 1.21236 0.92960 0.85460 0.97732 1.21353 0.96784 0.99922 0.95662 1.22009 1.00005 0.97173 0.98348 1.21647 1.02441 0.96341 0.80178 1.48031 1.18011 1.51676 1.15287 1.16809 0.81520 0.80150 0.83244 1.90826 1.44203 1.36883 1.69100 1.24368 0.98745 1.15004 0.99398 1.20347 0.97494 0.95386 0.94152 1.20242 0.98183 1.06549 0.96000 1.22128 0.99924 1.09421 0.85608 1.91529 1.93405 1.89549 1.33462 1.83553 1.10667 1.55601 0.99784 1.22156 0.90039 0.92301 0.96887 0.93826 0.87702 0.96970 0.91965 0.91967 0.96496 0.95820 0.92217 0.90609 0.90752 0.90751 0.91344 0.89028 0.82240 0.82539 0.89412 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.40 10.09 55.49 0.56 -25.84 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.22 -6.03 10.28 -15.06 -0.15 -6.18 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.60 -14.93 3.40 -170.23 -0.58 -15.51 16 10 C 0.15 3.57 5.57 -2.43 -0.01 3.56 16 11 C -0.14 -2.34 5.99 -24.88 -0.15 -2.49 16 12 C -0.08 -1.31 0.53 -154.08 -0.08 -1.39 16 13 C 0.15 3.07 6.14 -3.32 -0.02 3.05 16 14 C -0.10 -1.40 4.58 -27.03 -0.12 -1.52 16 15 C -0.14 -1.72 5.90 -26.55 -0.16 -1.88 16 16 C 0.12 1.39 6.40 -3.71 -0.02 1.36 16 17 N -0.60 -8.11 2.85 -174.79 -0.50 -8.61 16 18 C 0.60 8.88 7.53 -13.00 -0.10 8.78 16 19 O -0.53 -9.16 16.51 5.16 0.09 -9.08 16 20 C -0.25 -3.43 5.49 -36.87 -0.20 -3.63 16 21 C -0.04 -0.52 10.23 -40.45 -0.41 -0.94 16 22 C -0.18 -2.06 10.16 -41.32 -0.42 -2.48 16 23 C -0.03 -0.41 8.10 29.31 0.24 -0.18 16 24 F -0.10 -1.28 17.32 2.25 0.04 -1.24 16 25 S 0.24 2.77 19.85 -107.50 -2.13 0.63 16 26 C 0.11 1.46 4.42 -4.04 -0.02 1.44 16 27 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.11 2.76 5.88 -51.93 -0.31 2.46 16 29 H 0.01 0.30 7.78 -51.93 -0.40 -0.10 16 30 H 0.06 0.93 8.01 -51.93 -0.42 0.51 16 31 H 0.06 1.05 8.02 -51.93 -0.42 0.63 16 32 H 0.02 0.36 7.66 -51.93 -0.40 -0.04 16 33 H 0.02 0.50 6.01 -51.93 -0.31 0.19 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.23 7.52 -51.93 -0.39 0.84 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.09 6.34 -51.93 -0.33 0.76 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.15 7.02 -51.93 -0.36 0.78 16 40 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.09 1.21 3.84 -30.14 -0.12 1.09 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 350.62 15.07 5.28 5.28 Total: -1.00 -31.09 350.62 -9.54 -40.62 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.53 Total: -0.34 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.73 Total: -2.88 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.52 Total: -49.96 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.13 Total: 0.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.09 -9.54 -40.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054246711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.124 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds