Wall clock time and date at job start Tue Mar 31 2020 20:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00469 * 2 1 4 4 H 1.48497 * 109.47338 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47044 * 299.99724 * 3 2 1 6 6 H 1.48503 * 109.47260 * 59.99642 * 3 2 1 7 7 C 1.38813 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00143 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99791 * 0.02562 * 7 2 1 10 10 C 1.47482 * 125.66096 * 359.97284 * 9 7 2 11 11 C 1.55026 * 104.90260 * 204.02733 * 10 9 7 12 12 C 1.54491 * 101.52933 * 323.65276 * 11 10 9 13 13 C 1.47185 * 125.66082 * 180.02562 * 9 7 2 14 14 C 1.52228 * 110.27754 * 153.37971 * 12 11 10 15 15 C 1.53160 * 109.68997 * 63.06712 * 14 12 11 16 16 C 1.52723 * 109.35679 * 60.02509 * 15 14 12 17 17 N 1.46936 * 109.14598 * 304.97429 * 16 15 14 18 18 C 1.34780 * 120.70341 * 234.15476 * 17 16 15 19 19 O 1.21733 * 119.99733 * 173.34746 * 18 17 16 20 20 C 1.46338 * 119.99826 * 353.07696 * 18 17 16 21 21 C 1.36736 * 125.43820 * 150.09121 * 20 18 17 22 22 C 1.37346 * 113.33066 * 179.97438 * 21 20 18 23 23 C 1.34203 * 115.04626 * 0.02562 * 22 21 20 24 24 F 1.35104 * 124.53669 * 180.02562 * 23 22 21 25 25 S 1.70620 * 110.92028 * 359.75327 * 23 22 21 26 26 C 1.47071 * 118.59380 * 53.89201 * 17 16 15 27 27 H 0.97004 * 119.99969 * 0.02562 * 1 2 3 28 28 H 1.08998 * 110.35765 * 322.89206 * 10 9 7 29 29 H 1.09004 * 110.34641 * 85.07275 * 10 9 7 30 30 H 1.08999 * 111.01521 * 205.58734 * 11 10 9 31 31 H 1.09003 * 111.01411 * 81.71188 * 11 10 9 32 32 H 1.09005 * 109.90628 * 59.09743 * 13 9 7 33 33 H 1.08995 * 109.91245 * 297.83073 * 13 9 7 34 34 H 1.09002 * 109.43857 * 183.13196 * 14 12 11 35 35 H 1.08997 * 109.43782 * 303.04381 * 14 12 11 36 36 H 1.09007 * 109.50452 * 180.09912 * 15 14 12 37 37 H 1.08993 * 109.50071 * 300.17777 * 15 14 12 38 38 H 1.09002 * 109.47878 * 185.05319 * 16 15 14 39 39 H 1.08996 * 109.40251 * 64.85371 * 16 15 14 40 40 H 1.07997 * 123.33213 * 359.96048 * 21 20 18 41 41 H 1.08004 * 122.47147 * 179.97438 * 22 21 20 42 42 H 1.09007 * 109.57366 * 67.63865 * 26 17 16 43 43 H 1.09003 * 109.57263 * 187.88123 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1423 -2.5335 0.0006 11 6 -0.4041 -3.9344 0.6105 12 6 0.7805 -4.7458 0.0403 13 6 1.9319 -3.7292 0.0016 14 6 1.1180 -5.9073 0.9647 15 6 -0.0710 -6.8697 1.0395 16 6 -0.3771 -7.4057 -0.3575 17 7 -0.5886 -6.2750 -1.2718 18 6 -1.7148 -6.1858 -2.0069 19 8 -1.9328 -5.1869 -2.6676 20 6 -2.6725 -7.2922 -2.0155 21 6 -4.0229 -7.1705 -2.1921 22 6 -4.6867 -8.3724 -2.1561 23 6 -3.9071 -9.4463 -1.9559 24 9 -4.3579 -10.7180 -1.8875 25 16 -2.2695 -8.9910 -1.8069 26 6 0.4519 -5.2398 -1.3634 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5999 -1.7599 0.6171 29 1 -0.5281 -2.4835 -1.0177 30 1 -1.3563 -4.3387 0.2669 31 1 -0.3661 -3.9000 1.6994 32 1 2.5638 -3.8500 0.8816 33 1 2.5215 -3.8707 -0.9041 34 1 1.9893 -6.4366 0.5788 35 1 1.3379 -5.5253 1.9616 36 1 0.1732 -7.6991 1.7034 37 1 -0.9435 -6.3410 1.4234 38 1 -1.2770 -8.0198 -0.3221 39 1 0.4629 -8.0058 -0.7072 40 1 -4.5185 -6.2232 -2.3445 41 1 -5.7571 -8.4476 -2.2789 42 1 1.3470 -5.6612 -1.8211 43 1 0.0886 -4.4095 -1.9690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054246712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:29 Heat of formation + Delta-G solvation = -5.905389 kcal Electronic energy + Delta-G solvation = -27670.094438 eV Core-core repulsion = 23757.647052 eV Total energy + Delta-G solvation = -3912.447386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -49.41027 -40.55073 -38.70391 -37.44472 -35.94738 -33.18777 -32.00427 -30.44882 -29.43901 -28.54482 -26.17681 -25.70777 -24.54428 -23.73235 -22.02282 -21.47233 -20.14460 -19.75569 -18.58630 -18.14328 -17.08092 -16.78517 -16.67888 -16.30186 -15.61038 -15.27186 -15.01640 -14.79157 -14.52022 -14.34900 -13.93592 -13.67644 -13.35433 -13.26698 -13.03963 -12.90777 -12.40549 -12.36424 -12.19125 -11.91770 -11.59683 -11.43060 -11.13934 -11.03011 -10.86409 -10.78436 -10.73933 -10.19036 -10.05849 -9.91943 -9.82746 -9.67493 -9.41049 -9.04931 -8.91798 -8.59131 -8.56304 -6.77132 -5.59075 -3.01075 0.05711 0.64685 1.23384 1.97079 2.81015 3.09364 3.42980 3.48020 3.50853 3.96891 4.32031 4.52284 4.63773 4.88185 4.93871 4.96076 4.98154 5.13847 5.25546 5.31563 5.46444 5.48294 5.55147 5.65245 5.67733 5.79065 5.86010 5.87390 5.96753 6.02835 6.10698 6.28466 6.30421 6.38937 6.48445 6.63152 6.72381 6.81330 6.93851 7.34166 7.63251 7.69299 7.93569 8.08837 8.42630 9.27616 9.88710 10.54090 11.44345 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.002905 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.187465 B = 9635.254709 C =10321.258565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.913 3.087 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.128 4.128 12 C -0.085 4.085 13 C 0.150 3.850 14 C -0.101 4.101 15 C -0.131 4.131 16 C 0.095 3.905 17 N -0.602 5.602 18 C 0.587 3.413 19 O -0.512 6.512 20 C -0.251 4.251 21 C -0.042 4.042 22 C -0.179 4.179 23 C -0.043 4.043 24 F -0.103 7.103 25 S 0.237 5.763 26 C 0.133 3.867 27 H 0.251 0.749 28 H 0.103 0.897 29 H 0.014 0.986 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.027 0.973 33 H 0.021 0.979 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.164 0.836 41 H 0.156 0.844 42 H 0.066 0.934 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 -22.609 -0.558 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.207 4.207 3 Si 0.744 3.256 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.028 3.972 11 C -0.166 4.166 12 C -0.086 4.086 13 C 0.023 3.977 14 C -0.139 4.139 15 C -0.169 4.169 16 C -0.029 4.029 17 N -0.335 5.335 18 C 0.374 3.626 19 O -0.389 6.389 20 C -0.372 4.372 21 C -0.073 4.073 22 C -0.211 4.211 23 C -0.180 4.180 24 F -0.082 7.082 25 S 0.502 5.498 26 C 0.012 3.988 27 H 0.062 0.938 28 H 0.121 0.879 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.181 0.819 41 H 0.174 0.826 42 H 0.084 0.916 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.378 -22.718 -0.712 23.147 hybrid contribution -1.135 1.139 -0.231 1.624 sum -5.513 -21.580 -0.944 22.293 Atomic orbital electron populations 1.69834 1.04853 1.24544 1.57579 1.24788 0.95695 0.97670 1.02552 0.86024 0.78611 0.83801 0.77204 1.20586 1.21799 1.21835 1.19101 0.90452 0.82483 1.42972 0.90522 1.44566 1.01981 0.99586 1.86859 1.21935 0.84420 0.92453 0.98350 1.22934 0.95564 0.98647 0.99504 1.21350 0.98254 0.94967 0.94053 1.21169 0.92932 0.85658 0.97926 1.21398 0.96884 0.95546 1.00111 1.21823 1.00134 0.99656 0.95272 1.22009 1.01778 0.88345 0.90790 1.47997 1.18921 1.25044 1.41502 1.16824 0.80315 0.85283 0.80221 1.90918 1.74719 1.30341 1.42882 1.24580 0.98762 0.96276 1.17569 1.20488 0.91375 0.99405 0.96060 1.20279 1.02751 0.90796 1.07314 1.22354 1.00365 0.83013 1.12229 1.91524 1.88608 1.33899 1.94137 1.83665 1.01318 0.98542 1.66231 1.21628 0.88935 0.90706 0.97580 0.93847 0.87940 0.96763 0.92697 0.92346 0.95513 0.96112 0.92076 0.91175 0.90671 0.90947 0.90049 0.90776 0.81887 0.82635 0.91571 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.40 10.09 55.49 0.56 -26.84 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.22 -6.23 10.28 -15.06 -0.15 -6.38 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.51 3.40 -170.23 -0.58 -16.09 16 10 C 0.15 3.82 5.56 -2.43 -0.01 3.81 16 11 C -0.13 -2.46 4.91 -24.88 -0.12 -2.58 16 12 C -0.08 -1.41 0.56 -154.09 -0.09 -1.49 16 13 C 0.15 3.04 6.42 -3.33 -0.02 3.02 16 14 C -0.10 -1.27 4.53 -27.04 -0.12 -1.40 16 15 C -0.13 -1.34 5.89 -26.79 -0.16 -1.50 16 16 C 0.10 0.95 5.47 -3.95 -0.02 0.93 16 17 N -0.60 -8.24 2.52 -175.08 -0.44 -8.68 16 18 C 0.59 8.89 7.58 -13.00 -0.10 8.79 16 19 O -0.51 -9.93 16.41 5.16 0.08 -9.84 16 20 C -0.25 -2.95 5.74 -36.87 -0.21 -3.16 16 21 C -0.04 -0.44 10.13 -40.45 -0.41 -0.85 16 22 C -0.18 -1.61 10.16 -41.33 -0.42 -2.03 16 23 C -0.04 -0.40 8.10 29.31 0.24 -0.16 16 24 F -0.10 -0.99 17.32 2.25 0.04 -0.95 16 25 S 0.24 2.07 19.31 -107.50 -2.08 -0.01 16 26 C 0.13 2.13 4.98 -4.04 -0.02 2.11 16 27 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.10 2.90 5.88 -51.93 -0.31 2.59 16 29 H 0.01 0.40 7.67 -51.93 -0.40 0.00 16 30 H 0.05 1.03 7.60 -51.93 -0.39 0.64 16 31 H 0.06 1.11 8.01 -51.93 -0.42 0.69 16 32 H 0.03 0.54 7.79 -51.93 -0.40 0.13 16 33 H 0.02 0.42 7.80 -51.93 -0.40 0.02 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 36 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.07 0.84 7.32 -51.93 -0.38 0.46 16 38 H 0.08 0.72 3.97 -26.07 -0.10 0.61 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 43 H 0.10 2.05 6.22 -51.93 -0.32 1.73 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -32.48 350.88 -9.50 -41.98 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.63 Total: -0.88 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.72 Total: -1.33 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.46 Total: -51.61 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.95 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.08 Total: -0.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.48 -9.50 -41.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054246712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.072 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds