Wall clock time and date at job start Tue Mar 31 2020 21:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38065 * 126.28229 * 2 1 4 4 C 1.47387 * 126.42398 * 0.02562 * 3 2 1 5 5 O 1.21614 * 119.99836 * 89.99732 * 4 3 2 6 6 N 1.34775 * 120.00285 * 270.00492 * 4 3 2 7 7 C 1.47393 * 135.85003 * 359.62677 * 6 4 3 8 8 C 1.52073 * 87.40713 * 154.38864 * 7 6 4 9 9 C 1.47391 * 135.85502 * 180.02562 * 6 4 3 10 10 C 1.53516 * 117.21532 * 267.27756 * 8 7 6 11 11 C 1.54629 * 102.70217 * 262.93310 * 10 8 7 12 12 N 1.47157 * 107.37846 * 339.38107 * 11 10 8 13 13 C 1.36932 * 125.58037 * 179.04082 * 12 11 10 14 14 H 1.07999 * 119.99984 * 180.02562 * 13 12 11 15 15 C 1.38818 * 120.00018 * 0.02812 * 13 12 11 16 16 N 1.31617 * 119.99921 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00007 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47329 * 59.99693 * 17 15 13 19 19 H 1.48501 * 109.47517 * 180.02562 * 17 15 13 20 20 H 1.48511 * 109.47251 * 300.00063 * 17 15 13 21 21 C 1.47750 * 108.83748 * 359.09009 * 12 11 10 22 22 C 1.41387 * 107.15536 * 179.85145 * 3 2 1 23 23 Cl 1.73600 * 126.00603 * 180.19852 * 22 3 2 24 24 N 1.30531 * 107.98827 * 0.41824 * 22 3 2 25 25 N 1.34231 * 126.28169 * 180.31311 * 2 1 3 26 26 C 1.46509 * 125.73594 * 359.96163 * 25 2 1 27 27 H 1.09002 * 109.47152 * 269.71360 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.71460 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.71441 * 1 2 3 30 30 H 1.08995 * 113.54110 * 268.99972 * 7 6 4 31 31 H 1.08998 * 113.54229 * 39.67856 * 7 6 4 32 32 H 1.09007 * 113.53723 * 320.31616 * 9 6 4 33 33 H 1.08995 * 113.54699 * 90.92260 * 9 6 4 34 34 H 1.09000 * 110.75820 * 21.23204 * 10 8 7 35 35 H 1.08997 * 110.76422 * 144.63042 * 10 8 7 36 36 H 1.08999 * 109.86652 * 98.83299 * 11 10 8 37 37 H 1.09002 * 109.86391 * 219.93449 * 11 10 8 38 38 H 0.96998 * 120.00117 * 179.97438 * 16 15 13 39 39 H 1.09002 * 110.40546 * 263.50426 * 21 12 11 40 40 H 1.08997 * 110.40359 * 141.07693 * 21 12 11 41 41 H 1.08998 * 109.46892 * 90.00390 * 26 25 2 42 42 H 1.08998 * 109.46990 * 210.00151 * 26 25 2 43 43 H 1.08998 * 109.47142 * 330.00444 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1130 0.0000 4 6 1.8859 2.5202 0.0005 5 8 1.7055 3.1005 1.0540 6 7 1.6851 3.1639 -1.1664 7 6 1.7979 2.8223 -2.5957 8 6 0.7656 3.9060 -2.8653 9 6 1.2638 4.5179 -1.5685 10 6 -0.7074 3.4762 -2.9129 11 6 -0.9630 3.3056 -4.4283 12 7 0.0709 4.0758 -5.1379 13 6 0.2040 4.1666 -6.4977 14 1 0.9997 4.7596 -6.9240 15 6 -0.6838 3.4966 -7.3283 16 7 -1.6537 2.7744 -6.8088 17 14 -0.5026 3.6211 -9.1833 18 1 0.8285 3.1009 -9.5867 19 1 -1.5672 2.8204 -9.8396 20 1 -0.6254 5.0417 -9.5984 21 6 0.9425 4.7340 -4.1429 22 6 3.6599 0.6497 0.0035 23 17 5.0842 1.6421 0.0098 24 7 3.6339 -0.6553 -0.0036 25 7 2.3013 -1.0820 -0.0059 26 6 1.8490 -2.4755 -0.0127 27 1 -0.3633 -0.0051 1.0277 28 1 -0.3633 -0.8874 -0.5183 29 1 -0.3633 0.8926 -0.5094 30 1 2.7783 3.0399 -3.0193 31 1 1.4483 1.8173 -2.8321 32 1 0.4682 4.9288 -0.9469 33 1 2.0947 5.2104 -1.7033 34 1 -0.8515 2.5319 -2.3880 35 1 -1.3500 4.2525 -2.4976 36 1 -0.8918 2.2524 -4.6997 37 1 -1.9509 3.6896 -4.6829 38 1 -2.2743 2.3065 -7.3892 39 1 0.6208 5.7622 -3.9769 40 1 1.9814 4.7082 -4.4716 41 1 1.7364 -2.8159 -1.0421 42 1 2.5836 -3.0984 0.4976 43 1 0.8906 -2.5490 0.5012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073154972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:40 Heat of formation + Delta-G solvation = 109.966749 kcal Electronic energy + Delta-G solvation = -27544.172914 eV Core-core repulsion = 23654.626377 eV Total energy + Delta-G solvation = -3889.546537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.74776 -40.45343 -38.02853 -36.99689 -35.62798 -33.73007 -32.54494 -32.12229 -29.68288 -28.83383 -27.68353 -27.06257 -25.94147 -25.61733 -23.79890 -22.12051 -20.79103 -20.29297 -19.24248 -18.29717 -17.36320 -16.75866 -16.51492 -16.09308 -15.78516 -15.31238 -15.15143 -14.77459 -14.37030 -13.99103 -13.79717 -13.59542 -13.38884 -13.36066 -13.01521 -12.85755 -12.58230 -12.42926 -12.22509 -11.95826 -11.82215 -11.79144 -11.77520 -11.02108 -10.95545 -10.87912 -10.67101 -10.45058 -10.21972 -10.15327 -9.87244 -9.71543 -9.60216 -9.47732 -8.82841 -8.61922 -8.50853 -6.86001 -5.73794 -3.07000 1.18376 1.32593 2.01108 2.41362 2.62455 3.10308 3.39126 3.43901 3.44471 4.14687 4.27211 4.44500 4.57017 4.72133 4.75175 4.76643 4.97440 5.01497 5.10108 5.17578 5.28277 5.47089 5.50403 5.51918 5.56565 5.66885 5.68426 5.73300 5.83310 5.86401 6.01366 6.18965 6.21930 6.44445 6.48213 6.49656 6.66197 6.70563 7.10234 7.52758 7.58366 7.79243 7.85904 8.22377 8.27675 9.19427 9.79482 10.45047 11.37823 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.003241 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.575253 B = 8637.457573 C = 9071.022199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.141 3.859 3 C -0.263 4.263 4 C 0.625 3.375 5 O -0.538 6.538 6 N -0.632 5.632 7 C 0.124 3.876 8 C -0.105 4.105 9 C 0.120 3.880 10 C -0.116 4.116 11 C 0.180 3.820 12 N -0.604 5.604 13 C -0.228 4.228 14 H 0.078 0.922 15 C -0.007 4.007 16 N -0.923 5.923 17 Si 0.911 3.089 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C 0.153 3.847 22 C 0.159 3.841 23 Cl 0.016 6.984 24 N -0.281 5.281 25 N -0.349 5.349 26 C 0.096 3.904 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.252 0.748 39 H 0.027 0.973 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.552 -7.974 14.526 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.010 3.990 3 C -0.278 4.278 4 C 0.413 3.587 5 O -0.415 6.415 6 N -0.366 5.366 7 C 0.002 3.998 8 C -0.107 4.107 9 C -0.002 4.002 10 C -0.154 4.154 11 C 0.056 3.944 12 N -0.331 5.331 13 C -0.356 4.356 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.570 5.570 17 Si 0.741 3.259 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C 0.027 3.973 22 C -0.033 4.033 23 Cl 0.044 6.956 24 N -0.106 5.106 25 N -0.131 5.131 26 C -0.044 4.044 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.161 -8.999 15.092 18.620 hybrid contribution -0.046 0.651 -1.070 1.254 sum 6.115 -8.348 14.022 17.427 Atomic orbital electron populations 1.20633 0.85665 1.05185 1.04290 1.21392 0.94946 0.85446 0.97185 1.19647 0.91110 0.94113 1.22938 1.16538 0.76266 0.84053 0.81855 1.90778 1.52116 1.68197 1.30435 1.49777 1.66312 1.15037 1.05508 1.22841 0.99129 1.00184 0.77652 1.22195 0.96604 0.96814 0.95085 1.22800 0.98891 0.85209 0.93315 1.22459 0.92304 1.00036 1.00596 1.21213 0.92518 0.96482 0.84210 1.44526 1.31429 1.56016 1.01139 1.19010 1.11205 1.25474 0.79932 0.90453 1.24771 0.97770 0.99748 0.98010 1.69943 1.18422 1.35460 1.33204 0.86218 0.77061 0.77465 0.85122 1.21198 1.21651 1.21175 1.21142 0.95027 0.94161 0.87001 1.22449 0.88501 0.90452 1.01947 1.98409 1.35463 1.64902 1.96800 1.77144 0.96807 1.10501 1.26124 1.48032 1.02726 1.06603 1.55736 1.22059 1.01372 0.76596 1.04371 0.89070 0.89862 0.88713 0.89594 0.90487 0.90287 0.89645 0.92270 0.91727 0.93634 0.93831 0.93756 0.95500 0.93924 0.89702 0.88602 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 9.70 36.01 0.35 -0.52 16 2 C 0.14 1.69 7.01 -81.61 -0.57 1.12 16 3 C -0.26 -3.87 5.69 -105.04 -0.60 -4.47 16 4 C 0.63 10.16 7.41 -12.54 -0.09 10.07 16 5 O -0.54 -10.34 17.88 5.27 0.09 -10.24 16 6 N -0.63 -9.50 3.70 -187.00 -0.69 -10.19 16 7 C 0.12 1.86 7.76 -7.32 -0.06 1.80 16 8 C -0.11 -1.66 1.06 -155.20 -0.16 -1.83 16 9 C 0.12 1.69 8.03 -7.46 -0.06 1.63 16 10 C -0.12 -1.98 6.41 -25.61 -0.16 -2.14 16 11 C 0.18 4.08 5.39 -2.83 -0.02 4.06 16 12 N -0.60 -14.45 3.41 -170.53 -0.58 -15.03 16 13 C -0.23 -6.07 10.28 -15.06 -0.15 -6.23 16 14 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 15 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 16 N -0.92 -26.07 10.30 55.49 0.57 -25.50 16 17 Si 0.91 21.47 29.55 -169.99 -5.02 16.44 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.15 2.87 6.70 -3.22 -0.02 2.85 16 22 C 0.16 2.32 7.89 -16.91 -0.13 2.19 16 23 Cl 0.02 0.22 29.19 -51.86 -1.51 -1.29 16 24 N -0.28 -3.91 12.50 33.18 0.41 -3.50 16 25 N -0.35 -3.90 3.98 -63.34 -0.25 -4.15 16 26 C 0.10 0.57 11.06 59.85 0.66 1.24 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.52 7.69 -51.93 -0.40 0.12 16 29 H 0.09 0.96 7.95 -51.93 -0.41 0.55 16 30 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.09 8.13 -51.93 -0.42 0.66 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 1.14 7.38 -51.93 -0.38 0.76 16 37 H 0.04 1.11 7.49 -51.93 -0.39 0.72 16 38 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.77 8.00 -51.93 -0.42 0.36 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.32 7.62 -51.93 -0.40 -0.07 16 LS Contribution 375.24 15.07 5.65 5.65 Total: -1.00 -33.65 375.24 -8.61 -42.26 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -6.16 Total: -3.95 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -1.12 Total: 9.50 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.54 Total: -58.37 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -1.51 Total: -1.29 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.65 -8.61 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073154972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.226 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds