Wall clock time and date at job start Tue Mar 31 2020 20:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00439 * 2 1 4 4 H 1.48500 * 109.47489 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47285 * 299.99931 * 3 2 1 6 6 H 1.48502 * 109.47255 * 60.00255 * 3 2 1 7 7 C 1.38821 * 119.99389 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99656 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00087 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99806 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.88614 * 333.15023 * 10 9 7 12 12 C 1.53947 * 113.66367 * 104.50266 * 10 9 7 13 13 C 1.53951 * 87.29719 * 89.73834 * 12 10 9 14 14 H 1.09004 * 113.65799 * 270.17154 * 13 12 10 15 15 N 1.46496 * 113.66735 * 139.20755 * 13 12 10 16 16 C 1.34771 * 120.00019 * 104.49954 * 15 13 12 17 17 O 1.21278 * 120.00402 * 0.02562 * 16 15 13 18 18 C 1.50702 * 119.99603 * 180.02562 * 16 15 13 19 19 N 1.46500 * 109.46877 * 180.02562 * 18 16 15 20 20 C 1.35051 * 126.04031 * 125.00416 * 19 18 16 21 21 C 1.35373 * 107.73214 * 179.97438 * 20 19 18 22 22 Cl 1.73599 * 126.04415 * 179.97438 * 21 20 19 23 23 C 1.39929 * 107.90416 * 0.22600 * 21 20 19 24 24 N 1.30848 * 108.21571 * 359.61656 * 23 21 20 25 25 C 1.52907 * 86.78273 * 24.73231 * 13 12 10 26 26 C 1.52909 * 121.14258 * 209.38261 * 25 13 12 27 27 C 1.53950 * 86.78329 * 209.37657 * 26 25 13 28 28 C 1.52904 * 121.13979 * 100.81736 * 25 13 12 29 29 H 0.97005 * 119.99677 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00253 * 359.97438 * 9 7 2 31 31 H 1.08995 * 113.58315 * 335.13145 * 12 10 9 32 32 H 1.09001 * 113.57658 * 204.33537 * 12 10 9 33 33 H 0.97006 * 119.99891 * 284.50492 * 15 13 12 34 34 H 1.09000 * 109.47344 * 60.00862 * 18 16 15 35 35 H 1.08995 * 109.47494 * 299.99954 * 18 16 15 36 36 H 1.08005 * 126.12881 * 359.92207 * 20 19 18 37 37 H 1.08007 * 125.88814 * 179.76724 * 23 21 20 38 38 H 1.08998 * 113.66418 * 323.85177 * 26 25 13 39 39 H 1.08997 * 113.66171 * 94.90127 * 26 25 13 40 40 H 1.09001 * 113.58196 * 270.12950 * 27 26 25 41 41 H 1.09003 * 113.64977 * 139.34546 * 27 26 25 42 42 H 1.09000 * 113.66610 * 265.09981 * 28 25 13 43 43 H 1.09011 * 113.66236 * 36.06073 * 28 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 1 3.0461 -3.5763 -0.4511 12 6 2.0599 -4.3679 1.3671 13 6 0.7669 -5.0737 0.9197 14 1 -0.1409 -4.5286 1.1783 15 7 0.7087 -6.4883 1.2958 16 6 -0.0724 -6.8813 2.3214 17 8 -0.7275 -6.0640 2.9326 18 6 -0.1318 -8.3365 2.7086 19 7 -1.0445 -8.5032 3.8424 20 6 -2.1089 -9.3330 3.8902 21 6 -2.6875 -9.1917 5.1059 22 17 -4.0942 -10.0370 5.6721 23 6 -1.9545 -8.2398 5.8232 24 7 -0.9668 -7.8306 5.0687 25 6 1.2379 -4.8392 -0.5160 26 6 0.2365 -4.6670 -1.6587 27 6 1.3130 -5.2725 -2.5777 28 6 1.8907 -5.9592 -1.3269 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3880 0.0005 31 1 1.9185 -3.6925 2.2107 32 1 2.9019 -5.0465 1.5040 33 1 1.2325 -7.1422 0.8068 34 1 0.8641 -8.6785 2.9902 35 1 -0.4920 -8.9230 1.8635 36 1 -2.4398 -9.9906 3.0999 37 1 -2.1660 -7.9028 6.8273 38 1 -0.6531 -5.2888 -1.5582 39 1 0.0043 -3.6261 -1.8836 40 1 1.9807 -4.5302 -3.0152 41 1 0.9164 -5.9709 -3.3147 42 1 2.9799 -5.9507 -1.2869 43 1 1.4671 -6.9446 -1.1320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078735083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:25 Heat of formation + Delta-G solvation = 104.064617 kcal Electronic energy + Delta-G solvation = -26622.244658 eV Core-core repulsion = 22732.442185 eV Total energy + Delta-G solvation = -3889.802473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.55498 -40.63144 -38.93364 -36.63098 -35.12270 -34.17036 -33.57811 -32.38074 -30.32969 -29.73390 -27.76286 -25.61723 -24.52783 -24.24636 -22.84682 -21.65700 -21.45348 -20.46295 -20.34545 -18.21109 -17.57027 -17.40967 -16.99667 -16.02960 -15.85432 -15.21361 -15.13558 -14.67472 -14.60027 -14.50149 -14.11990 -13.77008 -13.51215 -13.16317 -12.92813 -12.72147 -12.47350 -12.22821 -12.02402 -11.89656 -11.69140 -11.59397 -11.44211 -10.94479 -10.87326 -10.79884 -10.68898 -10.23559 -10.15790 -10.08016 -9.89253 -9.73059 -9.60722 -9.48417 -8.90481 -8.72586 -8.65702 -7.03021 -5.81800 -3.11737 1.42902 1.66955 2.41401 2.48704 2.52643 3.09972 3.41156 3.46745 3.49228 4.20413 4.37100 4.46312 4.52349 4.63625 4.69572 4.73584 4.82295 4.91223 5.10838 5.19460 5.26625 5.35128 5.39913 5.58607 5.73052 5.86556 5.87197 5.94558 5.98426 6.04989 6.12669 6.13683 6.34977 6.43068 6.50637 6.57438 6.65653 6.72181 6.81070 7.02409 7.32247 7.49239 7.67565 8.18174 8.36105 9.47463 10.02924 10.37233 11.40251 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.002409 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.413047 B =11618.836052 C =12737.422081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.701 5.701 10 C 0.197 3.803 11 H 0.067 0.933 12 C -0.182 4.182 13 C 0.142 3.858 14 H 0.113 0.887 15 N -0.712 5.712 16 C 0.494 3.506 17 O -0.505 6.505 18 C 0.115 3.885 19 N -0.353 5.353 20 C 0.071 3.929 21 C -0.185 4.185 22 Cl -0.046 7.046 23 C 0.058 3.942 24 N -0.246 5.246 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.133 4.133 28 C -0.115 4.115 29 H 0.256 0.744 30 H 0.387 0.613 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.396 0.604 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.183 0.817 37 H 0.191 0.809 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.968 -24.752 2.478 24.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.339 5.339 10 C 0.084 3.916 11 H 0.085 0.915 12 C -0.224 4.224 13 C 0.038 3.962 14 H 0.131 0.869 15 N -0.364 5.364 16 C 0.276 3.724 17 O -0.378 6.378 18 C -0.010 4.010 19 N -0.135 5.135 20 C -0.076 4.076 21 C -0.223 4.223 22 Cl -0.018 7.018 23 C -0.130 4.130 24 N -0.066 5.066 25 C -0.124 4.124 26 C -0.164 4.164 27 C -0.170 4.170 28 C -0.153 4.153 29 H 0.066 0.934 30 H 0.221 0.779 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.230 0.770 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.200 0.800 37 H 0.208 0.792 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.345 -23.226 2.754 23.391 hybrid contribution -0.554 -0.086 -0.072 0.565 sum -0.899 -23.311 2.682 23.483 Atomic orbital electron populations 1.69676 1.05132 1.25762 1.57019 1.24774 0.95521 0.97806 1.02548 0.86108 0.78779 0.83997 0.77202 1.20504 1.21834 1.21802 1.19275 0.91084 0.83771 1.43393 0.90928 1.42115 1.05804 0.99121 1.86848 1.20630 0.94298 0.84637 0.92064 0.91476 1.24296 0.96017 0.99690 1.02411 1.22437 0.99863 0.79105 0.94788 0.86943 1.45996 1.46421 1.10580 1.33447 1.20396 0.80775 0.89945 0.81266 1.90841 1.42345 1.53460 1.51190 1.21605 0.95313 0.97081 0.87019 1.47834 1.22361 1.31255 1.12058 1.22185 0.89894 0.96954 0.98581 1.20735 0.98113 1.06856 0.96637 1.98322 1.38164 1.76508 1.88807 1.23946 0.92933 0.95484 1.00612 1.77699 1.22005 1.16282 0.90621 1.23569 0.98554 0.98371 0.91886 1.22642 0.96021 1.02418 0.95303 1.22736 0.98952 0.99613 0.95741 1.22528 0.99969 0.96458 0.96344 0.93406 0.77869 0.90860 0.91246 0.76952 0.86485 0.85607 0.79998 0.79203 0.91097 0.89865 0.89989 0.92230 0.91321 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.61 9.98 -15.06 -0.15 -6.76 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.70 -16.93 4.91 -52.99 -0.26 -17.19 16 10 C 0.20 3.70 4.35 -67.48 -0.29 3.40 16 11 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 12 C -0.18 -3.13 7.68 -25.75 -0.20 -3.33 16 13 C 0.14 2.23 4.01 -67.48 -0.27 1.96 16 14 H 0.11 2.22 7.54 -51.93 -0.39 1.83 16 15 N -0.71 -8.22 5.29 -53.37 -0.28 -8.50 16 16 C 0.49 6.41 7.86 -10.99 -0.09 6.32 16 17 O -0.51 -9.54 15.35 5.56 0.09 -9.45 16 18 C 0.12 0.93 6.99 -5.19 -0.04 0.89 16 19 N -0.35 -3.93 3.40 -62.50 -0.21 -4.14 16 20 C 0.07 0.65 11.43 -17.16 -0.20 0.46 16 21 C -0.18 -1.93 6.65 -39.97 -0.27 -2.20 16 22 Cl -0.05 -0.43 29.30 -51.86 -1.52 -1.95 16 23 C 0.06 0.68 12.02 -17.34 -0.21 0.47 16 24 N -0.25 -3.46 11.64 30.64 0.36 -3.11 16 25 C -0.12 -1.79 0.91 -154.71 -0.14 -1.93 16 26 C -0.13 -1.90 7.59 -26.28 -0.20 -2.10 16 27 C -0.13 -1.65 8.08 -25.75 -0.21 -1.86 16 28 C -0.12 -1.27 7.16 -26.29 -0.19 -1.45 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.39 10.08 7.47 -40.82 -0.30 9.78 16 31 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.40 3.10 6.92 -40.82 -0.28 2.82 16 34 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.13 0.47 8.07 -51.93 -0.42 0.05 16 36 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.19 1.73 8.06 -52.48 -0.42 1.31 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.08 1.53 7.51 -51.93 -0.39 1.14 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.63 6.96 -51.92 -0.36 0.27 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -35.05 375.87 -8.93 -43.98 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.92 Total: 11.07 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.54 Total: -6.49 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.33 Total: -60.02 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.52 Total: -1.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.05 -8.93 -43.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078735083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.045 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds