Wall clock time and date at job start Tue Mar 31 2020 21:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30410 * 125.97653 * 2 1 4 4 N 1.39928 * 108.96247 * 180.30377 * 3 2 1 5 5 C 1.46500 * 125.75208 * 179.69585 * 4 3 2 6 6 C 1.34346 * 108.49720 * 359.71511 * 4 3 2 7 7 Cl 1.73599 * 126.31850 * 180.02562 * 6 4 3 8 8 C 1.38284 * 107.36457 * 0.02562 * 6 4 3 9 9 C 1.47303 * 126.43695 * 180.02562 * 8 6 4 10 10 O 1.21615 * 119.99935 * 90.01717 * 9 8 6 11 11 N 1.34778 * 119.99415 * 270.29636 * 9 8 6 12 12 C 1.47282 * 136.54792 * 359.35132 * 11 9 8 13 13 C 1.54395 * 87.49151 * 151.45255 * 12 11 9 14 14 H 1.08998 * 115.77513 * 141.82178 * 13 12 11 15 15 C 1.53067 * 111.60444 * 274.19828 * 13 12 11 16 16 C 1.53148 * 109.21504 * 142.37644 * 15 13 12 17 17 N 1.46544 * 108.24869 * 301.58971 * 16 15 13 18 18 C 1.36934 * 119.73512 * 236.44159 * 17 16 15 19 19 H 1.08002 * 120.00249 * 25.33718 * 18 17 16 20 20 C 1.38819 * 119.99557 * 205.33652 * 18 17 16 21 21 N 1.31621 * 120.00216 * 14.38218 * 20 18 17 22 22 Si 1.86805 * 119.99623 * 194.38487 * 20 18 17 23 23 H 1.48497 * 109.47344 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46989 * 119.99821 * 22 20 18 25 25 H 1.48502 * 109.46684 * 239.99772 * 22 20 18 26 26 C 1.44158 * 120.20193 * 56.38731 * 17 16 15 27 27 C 1.46462 * 136.53951 * 179.72660 * 11 9 8 28 28 H 1.09000 * 111.44324 * 96.36137 * 27 11 9 29 29 H 1.08998 * 109.46879 * 270.16225 * 1 2 3 30 30 H 1.08993 * 109.47429 * 30.16874 * 1 2 3 31 31 H 1.09001 * 109.46982 * 150.16606 * 1 2 3 32 32 H 1.09002 * 109.46970 * 270.02378 * 5 4 3 33 33 H 1.08993 * 109.47097 * 30.01998 * 5 4 3 34 34 H 1.08996 * 109.47033 * 150.02638 * 5 4 3 35 35 H 1.08996 * 113.52967 * 266.07328 * 12 11 9 36 36 H 1.09004 * 113.52973 * 36.70240 * 12 11 9 37 37 H 1.09000 * 109.51775 * 262.29513 * 15 13 12 38 38 H 1.09006 * 109.51174 * 22.45431 * 15 13 12 39 39 H 1.09004 * 109.70410 * 61.27478 * 16 15 13 40 40 H 1.08994 * 109.70832 * 181.90218 * 16 15 13 41 41 H 0.96998 * 119.99633 * 180.02562 * 21 20 18 42 42 H 1.09007 * 107.86130 * 198.92932 * 26 17 16 43 43 H 1.09003 * 108.79445 * 81.23803 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0554 0.0000 4 7 3.6111 0.6459 -0.0070 5 6 4.7775 1.5324 -0.0156 6 6 3.6459 -0.6971 -0.0050 7 17 5.0708 -1.6887 -0.0109 8 6 2.3373 -1.1438 0.0026 9 6 1.8922 -2.5480 0.0078 10 8 1.7136 -3.1254 1.0632 11 7 1.6883 -3.1945 -1.1571 12 6 1.7806 -2.8695 -2.5906 13 6 2.0936 -4.3608 -2.8391 14 1 1.6524 -4.7946 -3.7365 15 6 3.5865 -4.6579 -2.6781 16 6 3.7592 -6.0269 -2.0138 17 7 3.0742 -5.9983 -0.7187 18 6 3.7692 -6.2925 0.4239 19 1 4.8385 -6.1446 0.4588 20 6 3.0993 -6.7807 1.5375 21 7 1.8667 -7.2272 1.4206 22 14 3.9474 -6.8039 3.2017 23 1 5.3189 -6.2509 3.0662 24 1 3.1738 -5.9774 4.1630 25 1 4.0232 -8.2010 3.6991 26 6 1.6745 -5.6609 -0.6459 27 6 1.2686 -4.5358 -1.5692 28 1 0.2012 -4.5697 -1.7877 29 1 -0.3633 0.0029 1.0277 30 1 -0.3634 0.8884 -0.5164 31 1 -0.3633 -0.8915 -0.5113 32 1 5.0605 1.7505 -1.0454 33 1 4.5314 2.4616 0.4982 34 1 5.6084 1.0445 0.4939 35 1 0.8350 -2.5452 -3.0251 36 1 2.6082 -2.2029 -2.8333 37 1 4.0640 -4.6658 -3.6579 38 1 4.0453 -3.8902 -2.0548 39 1 3.3201 -6.7996 -2.6449 40 1 4.8192 -6.2319 -1.8645 41 1 1.3985 -7.5679 2.1988 42 1 1.4539 -5.3692 0.3810 43 1 1.0868 -6.5456 -0.8910 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084557564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:55 Heat of formation + Delta-G solvation = 88.832978 kcal Electronic energy + Delta-G solvation = -28811.185423 eV Core-core repulsion = 24920.722457 eV Total energy + Delta-G solvation = -3890.462966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.63285 -41.69786 -38.97446 -38.13370 -37.08204 -35.17547 -33.94836 -32.03634 -31.79105 -30.71930 -29.98333 -28.55501 -26.90517 -25.65088 -24.65439 -23.25348 -22.51127 -21.61482 -20.88698 -19.53734 -18.91433 -17.93999 -17.36863 -17.27889 -16.94975 -16.76340 -16.23514 -15.94689 -15.48569 -15.01319 -14.82503 -14.58030 -14.52735 -14.33646 -14.15471 -13.97602 -13.69813 -13.67060 -13.45398 -13.30049 -13.11597 -12.88310 -12.79029 -12.76637 -12.67806 -12.35305 -12.17226 -11.93080 -11.90983 -11.70846 -11.45650 -11.10401 -10.69395 -10.37691 -10.35292 -9.79106 -9.50208 -8.61449 -7.81383 -5.24222 0.14544 0.25708 1.13901 1.34306 1.41810 1.44347 1.46308 1.66755 2.10406 2.49922 3.19245 3.33542 3.46516 3.69325 3.72178 3.81866 3.99011 4.18474 4.24657 4.26771 4.28382 4.49658 4.54261 4.55900 4.63494 4.65072 4.72109 4.75123 4.80096 4.82363 4.91418 4.98734 5.10804 5.15482 5.25279 5.35818 5.47653 5.48925 5.61161 5.76425 5.89611 6.25951 6.45651 6.97232 7.25624 7.33965 8.04541 8.39700 9.22583 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.011751 B = 0.005254 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.268720 B = 5327.596141 C = 5885.905940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.114 3.886 3 N -0.280 5.280 4 N -0.348 5.348 5 C 0.081 3.919 6 C 0.151 3.849 7 Cl 0.018 6.982 8 C -0.268 4.268 9 C 0.620 3.380 10 O -0.576 6.576 11 N -0.626 5.626 12 C 0.112 3.888 13 C -0.100 4.100 14 H 0.134 0.866 15 C -0.107 4.107 16 C 0.139 3.861 17 N -0.595 5.595 18 C -0.246 4.246 19 H 0.057 0.943 20 C -0.042 4.042 21 N -0.930 5.930 22 Si 0.946 3.054 23 H -0.268 1.268 24 H -0.305 1.305 25 H -0.283 1.283 26 C 0.179 3.821 27 C 0.107 3.893 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.029 0.971 40 H 0.048 0.952 41 H 0.243 0.757 42 H 0.052 0.948 43 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 19.208 -13.095 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 N -0.104 5.104 4 N -0.130 5.130 5 C -0.057 4.057 6 C -0.007 4.007 7 Cl 0.046 6.954 8 C -0.285 4.285 9 C 0.408 3.592 10 O -0.454 6.454 11 N -0.360 5.360 12 C -0.010 4.010 13 C -0.119 4.119 14 H 0.152 0.848 15 C -0.146 4.146 16 C 0.014 3.986 17 N -0.318 5.318 18 C -0.377 4.377 19 H 0.075 0.925 20 C -0.237 4.237 21 N -0.577 5.577 22 Si 0.775 3.225 23 H -0.193 1.193 24 H -0.233 1.233 25 H -0.210 1.210 26 C 0.052 3.948 27 C 0.003 3.997 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.118 0.882 35 H 0.134 0.866 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 2.452 20.245 -12.222 23.774 hybrid contribution 0.532 -1.448 1.755 2.337 sum 2.984 18.796 -10.466 21.720 Atomic orbital electron populations 1.20367 0.83663 1.04871 1.04269 1.22634 0.98308 0.87504 0.96742 1.77160 0.85323 1.21300 1.26665 1.48684 1.07255 1.02255 1.54801 1.22494 0.82628 0.94434 1.06178 1.22000 0.89942 0.84985 1.03764 1.98464 1.34926 1.65440 1.96556 1.19829 0.91622 0.94452 1.22560 1.16774 0.76695 0.83918 0.81779 1.90856 1.53733 1.68472 1.32387 1.49517 1.66018 1.14651 1.05798 1.23514 1.03021 0.96822 0.77598 1.22840 0.96091 0.95856 0.97067 0.84841 1.21734 0.94530 0.97518 1.00809 1.20961 0.95840 0.95501 0.86284 1.43264 1.07130 1.79045 1.02333 1.19311 0.91872 1.35021 0.91464 0.92490 1.25520 0.97430 0.99291 1.01485 1.70165 1.13038 1.45982 1.28529 0.85520 0.78281 0.76852 0.81808 1.19285 1.23274 1.20982 1.19534 0.84613 0.91996 0.98695 1.22740 0.99381 0.83364 0.94255 0.88514 0.89700 0.87440 0.90287 0.87474 0.86589 0.88158 0.86587 0.90233 0.88471 0.93866 0.95338 0.93302 0.94763 0.92998 0.98831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.62 10.28 71.24 0.73 -0.89 16 2 C 0.11 3.30 7.26 43.53 0.32 3.61 16 3 N -0.28 -7.58 12.49 -46.66 -0.58 -8.16 16 4 N -0.35 -8.66 3.98 -357.41 -1.42 -10.08 16 5 C 0.08 1.12 11.28 127.77 1.44 2.56 16 6 C 0.15 4.67 7.54 84.32 0.64 5.30 16 7 Cl 0.02 0.55 28.56 -2.72 -0.08 0.48 16 8 C -0.27 -9.35 5.73 -20.12 -0.12 -9.46 16 9 C 0.62 26.26 7.38 86.63 0.64 26.90 16 10 O -0.58 -31.82 16.37 -4.08 -0.07 -31.89 16 11 N -0.63 -22.55 3.32 -869.69 -2.89 -25.44 16 12 C 0.11 2.66 7.77 81.19 0.63 3.29 16 13 C -0.10 -2.66 4.57 -10.48 -0.05 -2.71 16 14 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 15 C -0.11 -3.24 5.71 30.67 0.18 -3.07 16 16 C 0.14 5.61 6.45 86.42 0.56 6.17 16 17 N -0.60 -31.01 3.00 -711.01 -2.13 -33.14 16 18 C -0.25 -14.57 9.52 84.04 0.80 -13.77 16 19 H 0.06 3.34 7.83 -2.91 -0.02 3.32 16 20 C -0.04 -2.59 4.93 84.86 0.42 -2.17 16 21 N -0.93 -59.95 10.96 21.65 0.24 -59.71 16 22 Si 0.95 50.64 29.58 68.60 2.03 52.67 16 23 H -0.27 -13.63 7.11 99.48 0.71 -12.93 16 24 H -0.30 -17.04 7.11 99.48 0.71 -16.34 16 25 H -0.28 -14.57 7.11 99.48 0.71 -13.86 16 26 C 0.18 9.20 4.56 86.20 0.39 9.59 16 27 C 0.11 3.97 4.07 38.68 0.16 4.12 16 28 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.08 1.76 8.01 -2.39 -0.02 1.75 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 1.22 7.77 -2.39 -0.02 1.20 16 35 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.08 1.75 8.07 -2.39 -0.02 1.73 16 37 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.04 1.49 7.69 -2.38 -0.02 1.48 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.05 1.98 7.87 -2.39 -0.02 1.96 16 41 H 0.24 15.37 8.31 -92.71 -0.77 14.60 16 42 H 0.05 3.24 4.88 -2.38 -0.01 3.23 16 43 H -0.01 -0.34 7.99 -2.39 -0.02 -0.36 16 Total: -1.00 -86.30 368.34 2.86 -83.44 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: 1.03 Total: 2.35 kcal Atomic # 6 Polarization: 22.74 SS G_CDS: 6.73 Total: 29.47 kcal Atomic # 7 Polarization: -129.74 SS G_CDS: -6.79 Total: -136.53 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.07 Total: -31.89 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.03 Total: 52.67 kcal Atomic # 17 Polarization: 0.55 SS G_CDS: -0.08 Total: 0.48 kcal Total: -86.30 2.86 -83.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084557564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.278 kcal (2) G-P(sol) polarization free energy of solvation -86.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds