Wall clock time and date at job start Tue Mar 31 2020 21:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35459 * 126.43340 * 2 1 4 4 Cl 1.73606 * 127.23518 * 359.97438 * 3 2 1 5 5 C 1.41541 * 105.52666 * 179.89706 * 3 2 1 6 6 C 1.47664 * 126.46503 * 180.10371 * 5 3 2 7 7 O 1.21569 * 120.00175 * 0.29208 * 6 5 3 8 8 N 1.34782 * 119.99970 * 180.29376 * 6 5 3 9 9 C 1.47290 * 136.54404 * 0.02562 * 8 6 5 10 10 C 1.54084 * 87.60497 * 151.34811 * 9 8 6 11 11 H 1.08995 * 115.04332 * 141.62887 * 10 9 8 12 12 C 1.53066 * 111.38995 * 273.97198 * 10 9 8 13 13 C 1.52006 * 109.68358 * 142.51832 * 12 10 9 14 14 N 1.46539 * 108.11023 * 301.56231 * 13 12 10 15 15 C 1.36939 * 119.73427 * 236.30033 * 14 13 12 16 16 H 1.08000 * 120.00732 * 25.18911 * 15 14 13 17 17 C 1.38819 * 119.99439 * 205.18851 * 15 14 13 18 18 N 1.31616 * 120.00151 * 14.50903 * 17 15 14 19 19 Si 1.86794 * 119.99658 * 194.50556 * 17 15 14 20 20 H 1.48501 * 109.47679 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47200 * 119.99968 * 19 17 15 22 22 H 1.48506 * 109.47195 * 240.00211 * 19 17 15 23 23 C 1.45698 * 120.52392 * 56.32004 * 14 13 12 24 24 C 1.46465 * 136.53924 * 179.62578 * 8 6 5 25 25 H 1.08994 * 111.44210 * 96.40704 * 24 8 6 26 26 N 1.31830 * 107.07305 * 0.36905 * 5 3 2 27 27 N 1.28470 * 110.13521 * 359.76957 * 26 5 3 28 28 C 1.46498 * 124.93155 * 180.02562 * 27 26 5 29 29 H 1.08993 * 109.47008 * 269.68754 * 1 2 3 30 30 H 1.09001 * 109.46838 * 149.68815 * 1 2 3 31 31 H 1.08998 * 109.46938 * 29.68712 * 1 2 3 32 32 H 1.09005 * 113.52354 * 266.02986 * 9 8 6 33 33 H 1.08995 * 113.52779 * 36.66042 * 9 8 6 34 34 H 1.08999 * 109.51248 * 262.31922 * 12 10 9 35 35 H 1.08997 * 109.51390 * 22.48511 * 12 10 9 36 36 H 1.08999 * 109.87501 * 181.85739 * 13 12 10 37 37 H 1.09002 * 109.71566 * 61.17549 * 13 12 10 38 38 H 0.96996 * 119.99878 * 180.02562 * 18 17 15 39 39 H 1.08996 * 108.78930 * 199.09835 * 23 14 13 40 40 H 1.09000 * 108.69632 * 80.81846 * 23 14 13 41 41 H 1.08996 * 109.47608 * 269.97576 * 28 27 26 42 42 H 1.08999 * 109.47628 * 29.97641 * 28 27 26 43 43 H 1.09001 * 109.47423 * 149.97510 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3115 1.0898 0.0000 4 17 1.8234 2.7558 -0.0006 5 6 3.6338 0.5847 0.0025 6 6 4.8774 1.3809 0.0055 7 8 4.8217 2.5953 0.0116 8 7 6.0743 0.7613 0.0017 9 6 6.5580 -0.6299 -0.0060 10 6 7.8126 -0.1215 -0.7420 11 1 8.7469 -0.5968 -0.4436 12 6 7.5868 -0.0625 -2.2548 13 6 8.2822 1.1611 -2.8290 14 7 7.7397 2.3480 -2.1624 15 6 7.1861 3.3532 -2.9097 16 1 6.7776 3.1382 -3.8861 17 6 7.1502 4.6487 -2.4122 18 7 7.8863 4.9744 -1.3709 19 14 6.0571 5.9295 -3.2208 20 1 5.3367 5.3148 -4.3647 21 1 5.0734 6.4369 -2.2308 22 1 6.8926 7.0555 -3.7102 23 6 7.7850 2.4673 -0.7110 24 6 7.4816 1.1672 -0.0038 25 1 7.8995 1.1697 1.0028 26 7 3.5456 -0.7306 -0.0044 27 7 2.3126 -1.0912 -0.0059 28 6 1.8446 -2.4794 -0.0125 29 1 -0.3633 -0.0056 1.0276 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 6.7667 -1.0235 0.9889 33 1 5.9434 -1.3010 -0.6060 34 1 7.9976 -0.9589 -2.7194 35 1 6.5183 -0.0013 -2.4613 36 1 8.0960 1.2242 -3.9011 37 1 9.3546 1.0944 -2.6456 38 1 7.8608 5.8795 -1.0231 39 1 7.0573 3.2157 -0.3974 40 1 8.7803 2.8020 -0.4189 41 1 1.7280 -2.8187 -1.0417 42 1 2.5721 -3.1106 0.4978 43 1 0.8855 -2.5420 0.5015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084692602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:58 Heat of formation + Delta-G solvation = 117.747042 kcal Electronic energy + Delta-G solvation = -28455.406127 eV Core-core repulsion = 24566.196968 eV Total energy + Delta-G solvation = -3889.209159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.72007 -40.31969 -37.41720 -36.28308 -35.10726 -33.63753 -32.61682 -32.04954 -30.01619 -29.23848 -27.53736 -26.99664 -26.64928 -23.74595 -23.37688 -22.09846 -21.07849 -20.68479 -19.40416 -17.63287 -17.17431 -16.66734 -16.60198 -15.74561 -15.55549 -15.14590 -14.78393 -14.14000 -13.79087 -13.71651 -13.60397 -13.41620 -13.24022 -13.11424 -12.96533 -12.77872 -12.56623 -12.41790 -12.23832 -11.81132 -11.68544 -11.37742 -11.33254 -10.92505 -10.57253 -10.51721 -10.43903 -10.35312 -10.05080 -9.75297 -9.66342 -9.49307 -9.13206 -8.91990 -8.64741 -8.19895 -7.95261 -6.47908 -5.54525 -2.95901 1.60013 1.94037 1.97432 2.73384 3.38274 3.55794 3.64352 3.65530 3.90618 4.22281 4.37171 4.66295 4.71293 4.72575 4.82401 4.83573 4.98917 5.18989 5.21370 5.36114 5.47232 5.56366 5.58505 5.63452 5.68393 5.83514 5.84712 5.93504 6.07620 6.24177 6.32937 6.45522 6.50700 6.58848 6.64452 6.71527 6.90006 7.12075 7.60759 7.76640 7.89405 8.05727 8.43129 8.68926 8.88134 9.47118 10.11487 10.58843 11.53698 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.011472 B = 0.005178 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.053809 B = 5405.809963 C = 7093.851163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.017 3.983 3 C -0.103 4.103 4 Cl -0.007 7.007 5 C 0.021 3.979 6 C 0.621 3.379 7 O -0.491 6.491 8 N -0.620 5.620 9 C 0.105 3.895 10 C -0.115 4.115 11 H 0.091 0.909 12 C -0.113 4.113 13 C 0.148 3.852 14 N -0.585 5.585 15 C -0.250 4.250 16 H 0.061 0.939 17 C 0.013 3.987 18 N -0.904 5.904 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.293 1.293 23 C 0.166 3.834 24 C 0.122 3.878 25 H 0.073 0.927 26 N -0.249 5.249 27 N -0.286 5.286 28 C 0.090 3.910 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.018 0.982 38 H 0.250 0.750 39 H 0.105 0.895 40 H 0.030 0.970 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.539 -18.757 5.339 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C -0.141 4.141 4 Cl 0.021 6.979 5 C -0.141 4.141 6 C 0.406 3.594 7 O -0.362 6.362 8 N -0.356 5.356 9 C -0.019 4.019 10 C -0.135 4.135 11 H 0.110 0.890 12 C -0.152 4.152 13 C 0.022 3.978 14 N -0.308 5.308 15 C -0.379 4.379 16 H 0.079 0.921 17 C -0.186 4.186 18 N -0.549 5.549 19 Si 0.729 3.271 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.221 1.221 23 C 0.040 3.960 24 C 0.018 3.982 25 H 0.091 0.909 26 N -0.083 5.083 27 N -0.075 5.075 28 C -0.050 4.050 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.061 0.939 39 H 0.122 0.878 40 H 0.048 0.952 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.215 -18.738 5.420 23.015 hybrid contribution -1.190 1.290 -0.211 1.768 sum -13.405 -17.448 5.208 22.611 Atomic orbital electron populations 1.20361 0.86045 1.04207 1.03464 1.21030 0.95234 0.85876 1.08612 1.20562 0.92172 0.87835 1.13497 1.98366 1.90757 1.11674 1.97053 1.22088 0.94441 0.89173 1.08355 1.16068 0.79587 0.85837 0.77899 1.90927 1.85021 1.11756 1.48472 1.49155 1.04803 1.09270 1.72387 1.23256 0.93777 0.85330 0.99504 1.22709 0.97112 0.97079 0.96572 0.89044 1.21610 1.01594 0.99244 0.92756 1.20524 0.94611 0.86843 0.95863 1.43472 1.68566 1.17702 1.01019 1.19114 1.31396 0.86682 1.00713 0.92099 1.24877 0.98570 0.96802 0.98330 1.70010 1.40041 1.18413 1.26392 0.86285 0.80540 0.81628 0.78662 1.20557 1.21407 1.22065 1.20219 1.01083 0.91694 0.82983 1.22616 0.78216 0.98730 0.98629 0.90927 1.73693 1.01196 1.14076 1.19376 1.45263 1.02856 1.07107 1.52278 1.22141 1.01570 0.76777 1.04501 0.90071 0.90829 0.89288 0.90912 0.90527 0.92885 0.92141 0.92705 0.96381 0.93937 0.87751 0.95230 0.89630 0.88319 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 9.75 36.01 0.35 -0.28 16 2 C 0.02 0.22 6.94 -81.90 -0.57 -0.35 16 3 C -0.10 -1.75 6.79 -39.32 -0.27 -2.01 16 4 Cl -0.01 -0.13 27.91 -51.86 -1.45 -1.57 16 5 C 0.02 0.40 7.10 -82.76 -0.59 -0.19 16 6 C 0.62 13.84 8.01 -12.41 -0.10 13.74 16 7 O -0.49 -13.00 15.12 5.30 0.08 -12.91 16 8 N -0.62 -12.44 3.34 -189.06 -0.63 -13.07 16 9 C 0.10 1.61 7.18 -11.53 -0.08 1.52 16 10 C -0.12 -1.89 4.58 -90.45 -0.41 -2.30 16 11 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 12 C -0.11 -2.01 5.61 -27.20 -0.15 -2.16 16 13 C 0.15 3.20 6.44 -4.53 -0.03 3.17 16 14 N -0.59 -15.51 3.02 -175.60 -0.53 -16.05 16 15 C -0.25 -7.39 9.53 -15.06 -0.14 -7.54 16 16 H 0.06 1.80 7.83 -52.49 -0.41 1.38 16 17 C 0.01 0.38 4.94 -17.43 -0.09 0.30 16 18 N -0.90 -28.15 10.94 55.49 0.61 -27.54 16 19 Si 0.90 24.19 29.58 -169.99 -5.03 19.16 16 20 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.29 -7.95 7.11 56.52 0.40 -7.55 16 22 H -0.29 -7.75 7.11 56.52 0.40 -7.34 16 23 C 0.17 4.29 4.59 -5.44 -0.02 4.26 16 24 C 0.12 2.47 4.02 -77.83 -0.31 2.15 16 25 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 26 N -0.25 -3.85 10.54 33.42 0.35 -3.50 16 27 N -0.29 -3.38 3.72 -63.68 -0.24 -3.62 16 28 C 0.09 0.52 10.94 59.85 0.65 1.18 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.37 7.68 -51.93 -0.40 -0.03 16 31 H 0.09 0.72 8.02 -51.93 -0.42 0.30 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.13 7.39 -51.93 -0.38 0.75 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.21 7.68 -51.93 -0.40 0.82 16 36 H 0.05 1.17 7.87 -51.93 -0.41 0.76 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.10 3.15 4.95 -51.93 -0.26 2.90 16 40 H 0.03 0.81 8.00 -51.93 -0.42 0.40 16 41 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.28 7.58 -51.93 -0.39 -0.11 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -37.77 362.33 -9.14 -46.91 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -6.00 Total: -4.75 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -1.76 Total: 11.48 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -0.44 Total: -63.77 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -5.03 Total: 19.16 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.45 Total: -1.57 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.77 -9.14 -46.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084692602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.656 kcal (2) G-P(sol) polarization free energy of solvation -37.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds