Wall clock time and date at job start Tue Mar 31 2020 20:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00223 * 2 1 4 4 H 1.48491 * 109.47236 * 240.00323 * 3 2 1 5 5 H 1.48503 * 109.46796 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47034 * 119.99775 * 3 2 1 7 7 C 1.38820 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00040 * 155.95037 * 7 2 1 9 9 N 1.36942 * 119.99657 * 335.95047 * 7 2 1 10 10 C 1.44345 * 116.42830 * 332.73251 * 9 7 2 11 11 C 1.51566 * 113.01543 * 188.06293 * 10 9 7 12 12 C 1.52905 * 111.66790 * 320.12516 * 11 10 9 13 13 H 1.09004 * 113.04114 * 294.29115 * 12 11 10 14 14 C 1.55417 * 106.56805 * 169.87812 * 12 11 10 15 15 N 1.47378 * 106.73750 * 270.99741 * 14 12 11 16 16 C 1.34777 * 125.73996 * 179.05979 * 15 14 12 17 17 O 1.21282 * 120.00245 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99873 * 180.02562 * 16 15 14 19 19 N 1.46508 * 109.47109 * 180.02562 * 18 16 15 20 20 C 1.35040 * 126.03430 * 124.99811 * 19 18 16 21 21 C 1.35377 * 107.72372 * 179.72107 * 20 19 18 22 22 Cl 1.73606 * 126.04448 * 180.21701 * 21 20 19 23 23 C 1.39926 * 107.91070 * 0.24402 * 21 20 19 24 24 N 1.30851 * 108.21188 * 359.97438 * 23 21 20 25 25 C 1.47937 * 108.51969 * 359.32651 * 15 14 12 26 26 C 1.54099 * 109.62694 * 60.85450 * 12 11 10 27 27 H 1.09000 * 109.19262 * 187.52301 * 26 12 11 28 28 C 1.43980 * 116.42073 * 152.75176 * 9 7 2 29 29 H 0.97002 * 119.99951 * 359.97438 * 1 2 3 30 30 H 1.08998 * 108.77541 * 308.97983 * 10 9 7 31 31 H 1.09005 * 108.77077 * 67.26425 * 10 9 7 32 32 H 1.09000 * 109.04104 * 199.56235 * 11 10 9 33 33 H 1.09002 * 109.03776 * 80.69217 * 11 10 9 34 34 H 1.08996 * 110.00385 * 151.67669 * 14 12 11 35 35 H 1.09004 * 110.00210 * 30.32114 * 14 12 11 36 36 H 1.09000 * 109.47463 * 60.00266 * 18 16 15 37 37 H 1.08997 * 109.47478 * 299.99654 * 18 16 15 38 38 H 1.08000 * 126.14103 * 359.97438 * 20 19 18 39 39 H 1.08001 * 125.89654 * 179.97438 * 23 21 20 40 40 H 1.08995 * 110.56898 * 93.87786 * 25 15 14 41 41 H 1.09000 * 110.56283 * 216.73571 * 25 15 14 42 42 H 1.09005 * 108.11639 * 61.05139 * 28 9 7 43 43 H 1.08996 * 108.11460 * 304.60441 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0199 -1.2430 -0.3806 9 7 1.4146 -2.3364 0.4844 10 6 0.3924 -2.1481 1.4859 11 6 -0.0763 -3.4491 2.1063 12 6 -0.1975 -4.5605 1.0632 13 1 -0.9757 -4.3692 0.3243 14 6 -0.4256 -5.8822 1.8483 15 7 0.9078 -6.4371 2.1418 16 6 1.1552 -7.5719 2.8256 17 8 0.2344 -8.2320 3.2586 18 6 2.5759 -8.0207 3.0521 19 7 2.5772 -9.2719 3.8143 20 6 3.1788 -10.4242 3.4485 21 6 2.9512 -11.3354 4.4235 22 17 3.5158 -12.9770 4.4394 23 6 2.1798 -10.7204 5.4158 24 7 1.9530 -9.4846 5.0502 25 6 1.9292 -5.5356 1.5653 26 6 1.1791 -4.8200 0.4210 27 1 1.0613 -5.5147 -0.4106 28 6 1.8773 -3.5858 -0.0616 29 1 -0.4850 0.8401 0.0004 30 1 0.7869 -1.5060 2.2734 31 1 -0.4626 -1.6527 1.0256 32 1 -1.0491 -3.2909 2.5719 33 1 0.6371 -3.7555 2.8713 34 1 -0.9958 -6.5839 1.2396 35 1 -0.9570 -5.6769 2.7777 36 1 3.1144 -7.2545 3.6099 37 1 3.0640 -8.1808 2.0908 38 1 3.7439 -10.5882 2.5429 39 1 1.8317 -11.1853 6.3263 40 1 2.2708 -4.8175 2.3107 41 1 2.7685 -6.1096 1.1723 42 1 2.9381 -3.6844 0.1690 43 1 1.7749 -3.5404 -1.1458 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088123748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:20 Heat of formation + Delta-G solvation = 79.852951 kcal Electronic energy + Delta-G solvation = -26893.852814 eV Core-core repulsion = 23003.000444 eV Total energy + Delta-G solvation = -3890.852370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -41.61477 -40.39750 -38.49271 -36.67611 -35.74315 -33.69413 -32.69469 -31.64042 -30.50436 -30.26149 -28.54998 -27.26814 -25.56486 -23.65677 -22.35138 -21.93638 -21.51357 -21.31361 -19.49898 -18.10011 -17.56661 -17.30081 -17.16350 -16.24668 -15.54757 -15.31582 -14.97037 -14.71158 -14.51374 -14.28051 -13.97507 -13.87403 -13.60268 -13.39289 -13.17811 -12.97698 -12.84524 -12.43594 -12.27295 -11.97965 -11.86165 -11.65138 -11.36882 -11.16779 -10.81810 -10.75335 -10.62868 -10.35647 -10.31707 -10.29297 -9.89147 -9.76600 -9.65352 -9.63682 -8.72860 -8.70299 -8.54294 -6.68664 -5.69034 -3.34377 1.38372 1.60706 2.35830 2.38020 2.43978 2.83465 3.34271 3.41058 3.42738 4.04490 4.23589 4.35993 4.43087 4.60203 4.64873 4.69792 4.78934 4.98874 5.15234 5.22850 5.29782 5.30461 5.40658 5.43385 5.55075 5.75277 5.79766 5.95459 6.00086 6.05095 6.07039 6.25488 6.40414 6.44319 6.50200 6.57507 6.69156 6.76276 7.23357 7.26643 7.35127 7.75237 7.86051 7.94663 8.46693 9.22390 9.91598 10.21074 11.17334 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.030367 B = 0.002098 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.831150 B =13340.941714 C =13708.475315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.007 3.993 3 Si 0.900 3.100 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.272 4.272 8 H 0.065 0.935 9 N -0.585 5.585 10 C 0.156 3.844 11 C -0.122 4.122 12 C -0.080 4.080 13 H 0.101 0.899 14 C 0.112 3.888 15 N -0.614 5.614 16 C 0.514 3.486 17 O -0.518 6.518 18 C 0.120 3.880 19 N -0.353 5.353 20 C 0.073 3.927 21 C -0.185 4.185 22 Cl -0.046 7.046 23 C 0.058 3.942 24 N -0.249 5.249 25 C 0.100 3.900 26 C -0.097 4.097 27 H 0.075 0.925 28 C 0.176 3.824 29 H 0.254 0.746 30 H 0.019 0.981 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.184 0.816 39 H 0.191 0.809 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.014 0.986 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.007 -19.593 5.349 21.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.193 4.193 3 Si 0.729 3.271 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.401 4.401 8 H 0.083 0.917 9 N -0.310 5.310 10 C 0.031 3.969 11 C -0.160 4.160 12 C -0.099 4.099 13 H 0.119 0.881 14 C -0.010 4.010 15 N -0.349 5.349 16 C 0.299 3.701 17 O -0.393 6.393 18 C -0.005 4.005 19 N -0.135 5.135 20 C -0.074 4.074 21 C -0.224 4.224 22 Cl -0.018 7.018 23 C -0.130 4.130 24 N -0.069 5.069 25 C -0.022 4.022 26 C -0.116 4.116 27 H 0.093 0.907 28 C 0.050 3.950 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.201 0.799 39 H 0.208 0.792 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.032 0.968 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.855 -18.852 5.880 20.335 hybrid contribution 0.941 0.028 -0.281 0.983 sum 5.796 -18.824 5.599 20.476 Atomic orbital electron populations 1.69974 1.05489 1.25584 1.52170 1.24986 0.94994 0.98569 1.00753 0.86411 0.79143 0.83337 0.78178 1.20820 1.21676 1.21079 1.19071 0.95812 0.86441 1.38795 0.91691 1.42664 1.44178 1.00994 1.43170 1.20256 0.94538 0.91868 0.90263 1.21678 1.00603 0.96725 0.97037 1.22086 0.97488 0.92928 0.97424 0.88127 1.22447 0.83615 0.95051 0.99936 1.48684 1.09375 1.22617 1.54247 1.19978 0.90745 0.80563 0.78773 1.90793 1.45506 1.53957 1.48998 1.21569 0.96935 0.84582 0.97378 1.47869 1.40193 1.09109 1.16316 1.22213 0.99442 0.85611 1.00143 1.20730 1.12539 0.89115 1.00031 1.98324 1.88422 1.16457 1.98556 1.23933 0.97735 0.91418 0.99904 1.77673 1.16351 1.17253 0.95636 1.22696 0.90842 0.92298 0.96370 1.21645 0.95428 0.98150 0.96390 0.90656 1.19245 0.95216 0.84507 0.96068 0.93567 0.96262 0.90172 0.92289 0.93406 0.91746 0.91178 0.86213 0.85393 0.79905 0.79215 0.90105 0.90720 0.96835 0.95762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.58 10.89 55.49 0.60 -23.98 16 2 C 0.01 0.19 4.95 -17.43 -0.09 0.10 16 3 Si 0.90 20.91 29.62 -169.99 -5.03 15.88 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.27 -7.05 9.27 -15.05 -0.14 -7.19 16 8 H 0.07 1.66 7.94 -52.49 -0.42 1.25 16 9 N -0.59 -13.46 3.23 -179.70 -0.58 -14.04 16 10 C 0.16 3.46 5.10 -5.92 -0.03 3.42 16 11 C -0.12 -2.09 4.78 -27.51 -0.13 -2.22 16 12 C -0.08 -1.20 3.65 -88.81 -0.32 -1.52 16 13 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 14 C 0.11 1.52 6.24 -2.28 -0.01 1.50 16 15 N -0.61 -7.75 3.34 -169.44 -0.57 -8.32 16 16 C 0.51 6.76 7.88 -10.99 -0.09 6.68 16 17 O -0.52 -9.04 16.04 5.56 0.09 -8.95 16 18 C 0.12 1.09 6.01 -5.19 -0.03 1.06 16 19 N -0.35 -3.93 3.40 -62.50 -0.21 -4.14 16 20 C 0.07 0.66 11.43 -17.16 -0.20 0.47 16 21 C -0.19 -1.85 6.65 -39.97 -0.27 -2.12 16 22 Cl -0.05 -0.40 29.30 -51.86 -1.52 -1.92 16 23 C 0.06 0.64 12.02 -17.34 -0.21 0.43 16 24 N -0.25 -3.36 11.63 30.64 0.36 -3.01 16 25 C 0.10 1.16 5.46 -2.51 -0.01 1.14 16 26 C -0.10 -1.37 2.84 -90.90 -0.26 -1.63 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 28 C 0.18 3.24 5.74 -6.97 -0.04 3.20 16 29 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.02 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.08 2.05 5.80 -51.93 -0.30 1.75 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.79 6.60 -51.93 -0.34 0.45 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.00 7.79 -51.93 -0.40 0.60 16 36 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.13 0.67 7.80 -51.93 -0.40 0.27 16 38 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.19 1.55 8.06 -52.49 -0.42 1.12 16 40 H 0.08 1.02 7.16 -51.93 -0.37 0.65 16 41 H 0.07 0.63 7.51 -51.93 -0.39 0.24 16 42 H 0.01 0.25 7.81 -51.93 -0.41 -0.16 16 43 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 LS Contribution 360.57 15.07 5.43 5.43 Total: -1.00 -32.73 360.57 -9.23 -41.96 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.97 Total: -2.24 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.83 Total: 3.33 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.40 Total: -53.49 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.52 Total: -1.92 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.73 -9.23 -41.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088123748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.813 kcal (2) G-P(sol) polarization free energy of solvation -32.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds