Wall clock time and date at job start Tue Mar 31 2020 20:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00223 * 2 1 4 4 H 1.48491 * 109.47236 * 240.00323 * 3 2 1 5 5 H 1.48503 * 109.46796 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47034 * 119.99775 * 3 2 1 7 7 C 1.38820 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00040 * 155.95037 * 7 2 1 9 9 N 1.36942 * 119.99657 * 335.95047 * 7 2 1 10 10 C 1.44345 * 116.42830 * 332.73251 * 9 7 2 11 11 C 1.51566 * 113.01543 * 188.06293 * 10 9 7 12 12 C 1.52905 * 111.66790 * 320.12516 * 11 10 9 13 13 H 1.09004 * 113.04114 * 294.29115 * 12 11 10 14 14 C 1.55417 * 106.56805 * 169.87812 * 12 11 10 15 15 N 1.47378 * 106.73750 * 270.99741 * 14 12 11 16 16 C 1.34777 * 125.73996 * 179.05979 * 15 14 12 17 17 O 1.21282 * 120.00245 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99873 * 180.02562 * 16 15 14 19 19 N 1.46508 * 109.47109 * 180.02562 * 18 16 15 20 20 C 1.35040 * 126.03430 * 124.99811 * 19 18 16 21 21 C 1.35377 * 107.72372 * 179.72107 * 20 19 18 22 22 Cl 1.73606 * 126.04448 * 180.21701 * 21 20 19 23 23 C 1.39926 * 107.91070 * 0.24402 * 21 20 19 24 24 N 1.30851 * 108.21188 * 359.97438 * 23 21 20 25 25 C 1.47937 * 108.51969 * 359.32651 * 15 14 12 26 26 C 1.54099 * 109.62694 * 60.85450 * 12 11 10 27 27 H 1.09000 * 109.19262 * 187.52301 * 26 12 11 28 28 C 1.43980 * 116.42073 * 152.75176 * 9 7 2 29 29 H 0.97002 * 119.99951 * 359.97438 * 1 2 3 30 30 H 1.08998 * 108.77541 * 308.97983 * 10 9 7 31 31 H 1.09005 * 108.77077 * 67.26425 * 10 9 7 32 32 H 1.09000 * 109.04104 * 199.56235 * 11 10 9 33 33 H 1.09002 * 109.03776 * 80.69217 * 11 10 9 34 34 H 1.08996 * 110.00385 * 151.67669 * 14 12 11 35 35 H 1.09004 * 110.00210 * 30.32114 * 14 12 11 36 36 H 1.09000 * 109.47463 * 60.00266 * 18 16 15 37 37 H 1.08997 * 109.47478 * 299.99654 * 18 16 15 38 38 H 1.08000 * 126.14103 * 359.97438 * 20 19 18 39 39 H 1.08001 * 125.89654 * 179.97438 * 23 21 20 40 40 H 1.08995 * 110.56898 * 93.87786 * 25 15 14 41 41 H 1.09000 * 110.56283 * 216.73571 * 25 15 14 42 42 H 1.09005 * 108.11639 * 61.05139 * 28 9 7 43 43 H 1.08996 * 108.11460 * 304.60441 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0199 -1.2430 -0.3806 9 7 1.4146 -2.3364 0.4844 10 6 0.3924 -2.1481 1.4859 11 6 -0.0763 -3.4491 2.1063 12 6 -0.1975 -4.5605 1.0632 13 1 -0.9757 -4.3692 0.3243 14 6 -0.4256 -5.8822 1.8483 15 7 0.9078 -6.4371 2.1418 16 6 1.1552 -7.5719 2.8256 17 8 0.2344 -8.2320 3.2586 18 6 2.5759 -8.0207 3.0521 19 7 2.5772 -9.2719 3.8143 20 6 3.1788 -10.4242 3.4485 21 6 2.9512 -11.3354 4.4235 22 17 3.5158 -12.9770 4.4394 23 6 2.1798 -10.7204 5.4158 24 7 1.9530 -9.4846 5.0502 25 6 1.9292 -5.5356 1.5653 26 6 1.1791 -4.8200 0.4210 27 1 1.0613 -5.5147 -0.4106 28 6 1.8773 -3.5858 -0.0616 29 1 -0.4850 0.8401 0.0004 30 1 0.7869 -1.5060 2.2734 31 1 -0.4626 -1.6527 1.0256 32 1 -1.0491 -3.2909 2.5719 33 1 0.6371 -3.7555 2.8713 34 1 -0.9958 -6.5839 1.2396 35 1 -0.9570 -5.6769 2.7777 36 1 3.1144 -7.2545 3.6099 37 1 3.0640 -8.1808 2.0908 38 1 3.7439 -10.5882 2.5429 39 1 1.8317 -11.1853 6.3263 40 1 2.2708 -4.8175 2.3107 41 1 2.7685 -6.1096 1.1723 42 1 2.9381 -3.6844 0.1690 43 1 1.7749 -3.5404 -1.1458 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088123748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:19 Heat of formation + Delta-G solvation = 59.271888 kcal Electronic energy + Delta-G solvation = -26894.745276 eV Core-core repulsion = 23003.000444 eV Total energy + Delta-G solvation = -3891.744831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.36614 -41.49417 -39.69299 -37.37203 -37.25756 -34.58288 -34.10859 -33.09354 -32.00294 -31.08262 -29.71888 -28.21599 -27.05611 -25.14743 -23.67808 -23.25053 -22.33432 -22.19106 -20.42614 -19.41459 -18.95240 -18.32799 -18.21160 -17.32074 -16.89183 -16.41578 -16.31330 -15.74443 -15.67243 -15.37152 -15.28458 -15.14186 -14.66690 -14.64156 -14.26954 -14.17435 -13.93063 -13.57363 -13.37764 -13.32706 -12.93741 -12.80868 -12.66964 -12.51314 -12.35193 -12.21487 -12.04419 -11.79432 -11.53258 -11.47069 -11.30897 -11.19908 -11.16207 -10.54120 -10.47677 -9.75576 -9.42943 -8.62709 -7.66063 -5.36210 0.67428 0.94434 1.44441 1.47810 1.51183 1.56995 1.61669 1.71353 1.94295 2.53349 3.17599 3.25146 3.47324 3.59626 3.68003 3.78158 3.80835 3.85940 4.02672 4.10801 4.14476 4.35211 4.47515 4.49176 4.56480 4.61674 4.62834 4.65386 4.75644 4.92169 4.97761 5.06624 5.09590 5.19711 5.30558 5.34315 5.36319 5.44901 5.72328 5.76979 5.97521 6.38552 6.47237 6.52227 6.98554 7.25084 8.09166 8.27198 9.14908 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.030367 B = 0.002098 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.831150 B =13340.941714 C =13708.475315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.046 4.046 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.282 1.282 7 C -0.280 4.280 8 H 0.067 0.933 9 N -0.597 5.597 10 C 0.165 3.835 11 C -0.110 4.110 12 C -0.078 4.078 13 H 0.092 0.908 14 C 0.120 3.880 15 N -0.611 5.611 16 C 0.512 3.488 17 O -0.567 6.567 18 C 0.121 3.879 19 N -0.361 5.361 20 C 0.085 3.915 21 C -0.202 4.202 22 Cl -0.039 7.039 23 C 0.052 3.948 24 N -0.302 5.302 25 C 0.108 3.892 26 C -0.094 4.094 27 H 0.099 0.901 28 C 0.173 3.827 29 H 0.248 0.752 30 H -0.011 1.011 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.138 0.862 37 H 0.177 0.823 38 H 0.224 0.776 39 H 0.204 0.796 40 H 0.072 0.928 41 H 0.122 0.878 42 H 0.031 0.969 43 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.335 -21.476 4.707 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.243 4.243 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.209 1.209 7 C -0.410 4.410 8 H 0.085 0.915 9 N -0.321 5.321 10 C 0.039 3.961 11 C -0.148 4.148 12 C -0.097 4.097 13 H 0.110 0.890 14 C -0.003 4.003 15 N -0.345 5.345 16 C 0.300 3.700 17 O -0.446 6.446 18 C -0.003 4.003 19 N -0.143 5.143 20 C -0.062 4.062 21 C -0.241 4.241 22 Cl -0.011 7.011 23 C -0.135 4.135 24 N -0.122 5.122 25 C -0.013 4.013 26 C -0.113 4.113 27 H 0.117 0.883 28 C 0.047 3.953 29 H 0.058 0.942 30 H 0.007 0.993 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.156 0.844 37 H 0.194 0.806 38 H 0.240 0.760 39 H 0.221 0.779 40 H 0.090 0.910 41 H 0.140 0.860 42 H 0.049 0.951 43 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 7.221 -20.746 5.227 22.580 hybrid contribution 0.232 0.586 -0.105 0.639 sum 7.454 -20.159 5.123 22.095 Atomic orbital electron populations 1.70147 1.06706 1.25635 1.53856 1.25701 0.95691 1.01443 1.01481 0.85484 0.77843 0.79730 0.78310 1.19874 1.22348 1.20862 1.19425 0.96046 0.87803 1.37768 0.91487 1.42907 1.43885 1.02076 1.43279 1.19962 0.92977 0.93927 0.89220 1.21506 1.00808 0.94968 0.97532 1.21980 0.98181 0.92715 0.96837 0.88969 1.22226 0.84623 0.94221 0.99210 1.48694 1.08991 1.22665 1.54153 1.20718 0.92112 0.79727 0.77455 1.90779 1.47505 1.55397 1.50890 1.21878 0.94138 0.84533 0.99759 1.48051 1.40215 1.10197 1.15868 1.22858 0.98206 0.84417 1.00745 1.20890 1.13039 0.89793 1.00352 1.98324 1.88310 1.15880 1.98559 1.24284 0.97399 0.91142 1.00674 1.77600 1.18459 1.18601 0.97586 1.22705 0.91285 0.92370 0.94950 1.21562 0.94668 0.96815 0.98292 0.88312 1.19376 0.96416 0.84332 0.95160 0.94231 0.99332 0.93800 0.91805 0.92508 0.91203 0.92255 0.84418 0.80578 0.75994 0.77892 0.90959 0.86002 0.95116 0.97162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.49 10.89 21.65 0.24 -52.25 16 2 C -0.05 -2.50 4.95 84.86 0.42 -2.08 16 3 Si 0.96 43.53 29.62 68.60 2.03 45.56 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.28 -14.60 9.27 84.03 0.78 -13.83 16 8 H 0.07 3.40 7.94 -2.91 -0.02 3.37 16 9 N -0.60 -27.49 3.23 -722.43 -2.33 -29.82 16 10 C 0.16 7.51 5.10 86.31 0.44 7.95 16 11 C -0.11 -3.74 4.78 30.09 0.14 -3.60 16 12 C -0.08 -2.23 3.65 -9.62 -0.04 -2.27 16 13 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 14 C 0.12 3.06 6.24 87.04 0.54 3.60 16 15 N -0.61 -13.53 3.34 -808.39 -2.70 -16.23 16 16 C 0.51 12.05 7.88 87.66 0.69 12.74 16 17 O -0.57 -19.18 16.04 -3.03 -0.05 -19.23 16 18 C 0.12 1.68 6.01 85.63 0.51 2.20 16 19 N -0.36 -7.01 3.40 -351.66 -1.20 -8.21 16 20 C 0.08 1.25 11.43 83.54 0.95 2.21 16 21 C -0.20 -3.62 6.65 22.02 0.15 -3.47 16 22 Cl -0.04 -0.60 29.30 -2.72 -0.08 -0.68 16 23 C 0.05 1.10 12.02 85.25 1.02 2.13 16 24 N -0.30 -7.85 11.63 -56.98 -0.66 -8.51 16 25 C 0.11 2.05 5.46 86.58 0.47 2.53 16 26 C -0.09 -2.40 2.84 -10.98 -0.03 -2.44 16 27 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 28 C 0.17 6.05 5.74 85.82 0.49 6.54 16 29 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 30 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 16 31 H 0.04 2.37 5.80 -2.38 -0.01 2.36 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.06 1.83 6.60 -2.39 -0.02 1.81 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.65 7.79 -2.39 -0.02 1.63 16 36 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.18 0.68 7.80 -2.39 -0.02 0.67 16 38 H 0.22 1.24 8.06 -2.91 -0.02 1.22 16 39 H 0.20 3.25 8.06 -2.91 -0.02 3.23 16 40 H 0.07 1.56 7.16 -2.39 -0.02 1.55 16 41 H 0.12 1.24 7.51 -2.39 -0.02 1.22 16 42 H 0.03 1.00 7.81 -2.38 -0.02 0.98 16 43 H 0.01 0.39 8.13 -2.39 -0.02 0.37 16 Total: -1.00 -75.05 360.57 2.83 -72.22 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.02 Total: 4.94 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 6.56 Total: 12.21 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -6.66 Total: -115.02 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.05 Total: -19.23 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -75.05 2.83 -72.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088123748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.496 kcal (2) G-P(sol) polarization free energy of solvation -75.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds