Wall clock time and date at job start Tue Mar 31 2020 21:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28436 * 125.19252 * 2 1 4 4 C 1.30833 * 110.98459 * 180.23752 * 3 2 1 5 5 C 1.39810 * 107.87575 * 359.75396 * 4 3 2 6 6 Cl 1.73605 * 127.33694 * 180.02562 * 5 4 3 7 7 C 1.36749 * 125.18380 * 179.81344 * 2 1 3 8 8 C 1.47033 * 126.90741 * 0.03839 * 7 2 1 9 9 O 1.21648 * 119.99794 * 96.41497 * 8 7 2 10 10 N 1.34775 * 119.99860 * 276.41627 * 8 7 2 11 11 C 1.47187 * 126.70366 * 355.05576 * 10 8 7 12 12 C 1.53749 * 106.42785 * 211.40426 * 11 10 8 13 13 H 1.08993 * 112.28714 * 104.36321 * 12 11 10 14 14 C 1.54461 * 109.01156 * 229.45725 * 12 11 10 15 15 N 1.48328 * 104.32259 * 137.92148 * 14 12 11 16 16 C 1.36940 * 128.19469 * 138.17452 * 15 14 12 17 17 H 1.08002 * 119.99542 * 199.73562 * 16 15 14 18 18 C 1.38805 * 120.00403 * 19.72997 * 16 15 14 19 19 N 1.31628 * 119.99835 * 20.75798 * 18 16 15 20 20 Si 1.86800 * 120.00556 * 200.75659 * 18 16 15 21 21 H 1.48497 * 109.47341 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47088 * 59.99928 * 20 18 16 23 23 H 1.48506 * 109.46925 * 300.00224 * 20 18 16 24 24 C 1.48328 * 103.60559 * 318.43309 * 15 14 12 25 25 C 1.54060 * 104.51823 * 41.53337 * 24 15 14 26 26 C 1.53002 * 112.57863 * 97.43815 * 25 24 15 27 27 C 1.47191 * 126.69991 * 175.09454 * 10 8 7 28 28 H 1.08998 * 109.47417 * 274.43783 * 1 2 3 29 29 H 1.08998 * 109.46755 * 34.44070 * 1 2 3 30 30 H 1.09004 * 109.47188 * 154.42950 * 1 2 3 31 31 H 1.08004 * 126.06387 * 179.71618 * 4 3 2 32 32 H 1.09001 * 110.07097 * 92.16303 * 11 10 8 33 33 H 1.09003 * 110.06838 * 330.64197 * 11 10 8 34 34 H 1.09001 * 110.45939 * 19.21139 * 14 12 11 35 35 H 1.08998 * 110.46215 * 256.63500 * 14 12 11 36 36 H 0.97001 * 119.99569 * 5.84239 * 19 18 16 37 37 H 1.09008 * 110.46214 * 160.28107 * 24 15 14 38 38 H 1.09000 * 110.46346 * 282.85420 * 24 15 14 39 39 H 1.08998 * 109.47079 * 302.11101 * 26 25 24 40 40 H 1.09001 * 109.47322 * 62.11052 * 26 25 24 41 41 H 1.09001 * 109.47106 * 182.11656 * 26 25 24 42 42 H 1.09004 * 110.06518 * 267.83342 * 27 10 8 43 43 H 1.08998 * 110.06707 * 29.29668 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4735 0.7285 -0.0051 5 6 3.5629 -0.6667 -0.0030 6 17 5.0078 -1.6292 -0.0071 7 6 2.2529 -1.1177 0.0036 8 6 1.8008 -2.5167 0.0074 9 8 1.7264 -3.1347 -1.0378 10 7 1.4688 -3.1145 1.1688 11 6 1.5986 -2.5450 2.5199 12 6 1.8773 -3.7256 3.4645 13 1 2.9219 -3.7712 3.7721 14 6 0.9145 -3.6440 4.6695 15 7 0.4760 -5.0446 4.8844 16 6 0.3216 -5.7110 6.0707 17 1 0.3081 -6.7909 6.0856 18 6 0.1826 -4.9988 7.2539 19 7 -0.2071 -3.7419 7.2236 20 14 0.5485 -5.8239 8.8894 21 1 0.3247 -4.8561 9.9932 22 1 1.9618 -6.2793 8.9088 23 1 -0.3506 -6.9925 9.0664 24 6 0.2506 -5.5544 3.5098 25 6 1.4313 -4.9965 2.6925 26 6 2.5660 -6.0103 2.5324 27 6 0.9065 -4.4647 1.3340 28 1 -0.3634 0.0795 1.0245 29 1 -0.3633 0.8475 -0.5812 30 1 -0.3634 -0.9270 -0.4436 31 1 4.3041 1.4188 -0.0106 32 1 0.6722 -2.0473 2.8066 33 1 2.4280 -1.8383 2.5498 34 1 0.0605 -3.0095 4.4326 35 1 1.4366 -3.2688 5.5497 36 1 -0.4784 -3.3384 6.3843 37 1 0.2635 -6.6444 3.5008 38 1 -0.6940 -5.1804 3.1148 39 1 2.9176 -6.3205 3.5164 40 1 2.2017 -6.8802 1.9860 41 1 3.3872 -5.5525 1.9809 42 1 -0.1825 -4.4178 1.3422 43 1 1.2464 -5.1128 0.5262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091675455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:44 Heat of formation + Delta-G solvation = 78.779372 kcal Electronic energy + Delta-G solvation = -28045.781843 eV Core-core repulsion = 24154.882919 eV Total energy + Delta-G solvation = -3890.898924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.87065 -40.37073 -38.50727 -36.77463 -35.35617 -33.69083 -33.07241 -31.25349 -30.90886 -29.88662 -27.52674 -26.86481 -25.76211 -25.36160 -23.35765 -22.21006 -21.83454 -20.60058 -19.61695 -18.83719 -17.81986 -17.34475 -16.93051 -16.19943 -15.83185 -15.74545 -14.92606 -14.65831 -14.42386 -14.09127 -13.91996 -13.65080 -13.56084 -13.45082 -13.10907 -12.93114 -12.90877 -12.39153 -12.17049 -12.08577 -11.90916 -11.80018 -11.42232 -11.02839 -10.76882 -10.75093 -10.61511 -10.50019 -10.31036 -10.20648 -10.07173 -10.04226 -9.55750 -9.46332 -8.99810 -8.82617 -8.61336 -7.09123 -6.18493 -3.27305 1.19929 1.52973 2.08656 2.20357 2.51855 2.87918 3.44570 3.47694 3.65552 4.05591 4.19104 4.47272 4.65208 4.68266 4.71400 4.74233 4.99863 5.02119 5.05256 5.10408 5.23119 5.32566 5.37230 5.42373 5.52816 5.71387 5.79359 5.84033 5.86868 5.91871 6.04191 6.11222 6.20580 6.28519 6.38648 6.45580 6.53165 6.67726 6.80239 6.88712 7.30218 7.60368 7.61732 7.80608 8.34654 8.88086 9.69518 10.30780 11.17176 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.003313 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.742677 B = 8449.187594 C = 8705.579118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.264 5.264 3 N -0.270 5.270 4 C 0.025 3.975 5 C -0.117 4.117 6 Cl -0.018 7.018 7 C -0.001 4.001 8 C 0.606 3.394 9 O -0.520 6.520 10 N -0.597 5.597 11 C 0.106 3.894 12 C -0.110 4.110 13 H 0.088 0.912 14 C 0.143 3.857 15 N -0.596 5.596 16 C -0.325 4.325 17 H 0.066 0.934 18 C -0.026 4.026 19 N -0.924 5.924 20 Si 1.070 2.930 21 H -0.284 1.284 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.138 3.862 25 C -0.083 4.083 26 C -0.120 4.120 27 C 0.116 3.884 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.196 0.804 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.267 0.733 37 H 0.053 0.947 38 H 0.026 0.974 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.742 6.782 -14.350 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.052 5.052 3 N -0.101 5.101 4 C -0.153 4.153 5 C -0.155 4.155 6 Cl 0.010 6.990 7 C -0.131 4.131 8 C 0.390 3.610 9 O -0.395 6.395 10 N -0.330 5.330 11 C -0.017 4.017 12 C -0.131 4.131 13 H 0.106 0.894 14 C 0.016 3.984 15 N -0.320 5.320 16 C -0.453 4.453 17 H 0.084 0.916 18 C -0.227 4.227 19 N -0.566 5.566 20 Si 0.900 3.100 21 H -0.210 1.210 22 H -0.220 1.220 23 H -0.220 1.220 24 C 0.012 3.988 25 C -0.085 4.085 26 C -0.178 4.178 27 C -0.006 4.006 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.213 0.787 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.988 7.476 -13.192 15.679 hybrid contribution 0.544 -0.899 -1.658 1.963 sum 4.531 6.577 -14.851 16.862 Atomic orbital electron populations 1.22310 0.72039 1.05740 1.05319 1.45481 1.07727 1.01393 1.50633 1.73247 1.03280 1.13161 1.20413 1.23516 0.93925 0.92577 1.05325 1.21228 0.87267 0.92570 1.14391 1.98362 1.33050 1.70333 1.97256 1.21152 0.90907 0.89538 1.11551 1.16399 0.77797 0.83759 0.83058 1.90864 1.52903 1.64729 1.31011 1.48533 1.61211 1.17431 1.05784 1.22363 1.01726 0.97082 0.80509 1.23130 1.01487 0.92137 0.96330 0.89367 1.21838 0.93605 0.88264 0.94690 1.45111 1.76950 1.09494 1.00488 1.19777 1.50063 0.91383 0.84059 0.91576 1.25838 0.98379 0.97253 1.01255 1.70799 1.41925 1.14107 1.29740 0.83437 0.76175 0.74726 0.75708 1.20978 1.21998 1.21968 1.21752 0.92833 0.97677 0.86582 1.22536 0.97604 0.95567 0.92827 1.21576 0.96614 0.97486 1.02100 1.22535 0.97869 0.82035 0.98207 0.88804 0.87786 0.88634 0.78724 0.90833 0.90925 0.95551 0.91126 0.92129 0.92823 0.95645 0.91522 0.92785 0.93236 0.90670 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 11.21 59.85 0.67 1.36 16 2 N -0.26 -3.10 3.75 -63.85 -0.24 -3.34 16 3 N -0.27 -3.23 11.89 30.61 0.36 -2.87 16 4 C 0.02 0.27 12.04 -17.39 -0.21 0.06 16 5 C -0.12 -1.49 6.89 -38.88 -0.27 -1.76 16 6 Cl -0.02 -0.23 29.24 -51.86 -1.52 -1.75 16 7 C 0.00 -0.01 5.63 -82.00 -0.46 -0.47 16 8 C 0.61 9.04 6.98 -12.70 -0.09 8.95 16 9 O -0.52 -9.19 17.31 5.24 0.09 -9.10 16 10 N -0.60 -8.48 3.32 -172.25 -0.57 -9.05 16 11 C 0.11 1.50 6.33 -3.28 -0.02 1.48 16 12 C -0.11 -1.82 3.71 -88.28 -0.33 -2.15 16 13 H 0.09 1.48 7.93 -51.93 -0.41 1.07 16 14 C 0.14 2.99 4.61 -2.27 -0.01 2.97 16 15 N -0.60 -14.01 3.26 -168.72 -0.55 -14.56 16 16 C -0.33 -8.70 10.26 -15.06 -0.15 -8.86 16 17 H 0.07 1.76 7.91 -52.49 -0.42 1.35 16 18 C -0.03 -0.72 5.20 -17.43 -0.09 -0.81 16 19 N -0.92 -26.75 12.69 55.49 0.70 -26.04 16 20 Si 1.07 24.46 29.97 -169.99 -5.09 19.36 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.14 2.62 6.39 -2.48 -0.02 2.60 16 25 C -0.08 -1.31 1.10 -151.68 -0.17 -1.48 16 26 C -0.12 -1.78 8.64 37.16 0.32 -1.46 16 27 C 0.12 1.65 6.28 -2.58 -0.02 1.63 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.76 7.67 -51.93 -0.40 0.36 16 31 H 0.20 1.50 8.06 -52.48 -0.42 1.08 16 32 H 0.07 1.01 7.11 -51.93 -0.37 0.64 16 33 H 0.07 0.99 7.59 -51.93 -0.39 0.60 16 34 H 0.03 0.56 6.81 -51.93 -0.35 0.21 16 35 H 0.07 1.68 7.13 -51.93 -0.37 1.31 16 36 H 0.27 7.66 6.09 -40.82 -0.25 7.41 16 37 H 0.05 1.01 7.92 -51.92 -0.41 0.60 16 38 H 0.03 0.48 7.18 -51.93 -0.37 0.11 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.03 7.15 -51.93 -0.37 0.66 16 43 H 0.08 1.15 7.60 -51.93 -0.39 0.75 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -32.25 364.89 -7.99 -40.25 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.84 Total: -0.48 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.84 Total: 2.09 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.29 Total: -55.87 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.09 Total: 19.36 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.52 Total: -1.75 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.25 -7.99 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091675455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.027 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds