Wall clock time and date at job start Tue Mar 31 2020 21:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28436 * 125.19252 * 2 1 4 4 C 1.30833 * 110.98459 * 180.23752 * 3 2 1 5 5 C 1.39810 * 107.87575 * 359.75396 * 4 3 2 6 6 Cl 1.73605 * 127.33694 * 180.02562 * 5 4 3 7 7 C 1.36749 * 125.18380 * 179.81344 * 2 1 3 8 8 C 1.47033 * 126.90741 * 0.03839 * 7 2 1 9 9 O 1.21648 * 119.99794 * 96.41497 * 8 7 2 10 10 N 1.34775 * 119.99860 * 276.41627 * 8 7 2 11 11 C 1.47187 * 126.70366 * 355.05576 * 10 8 7 12 12 C 1.53749 * 106.42785 * 211.40426 * 11 10 8 13 13 H 1.08993 * 112.28714 * 104.36321 * 12 11 10 14 14 C 1.54461 * 109.01156 * 229.45725 * 12 11 10 15 15 N 1.48328 * 104.32259 * 137.92148 * 14 12 11 16 16 C 1.36940 * 128.19469 * 138.17452 * 15 14 12 17 17 H 1.08002 * 119.99542 * 199.73562 * 16 15 14 18 18 C 1.38805 * 120.00403 * 19.72997 * 16 15 14 19 19 N 1.31628 * 119.99835 * 20.75798 * 18 16 15 20 20 Si 1.86800 * 120.00556 * 200.75659 * 18 16 15 21 21 H 1.48497 * 109.47341 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47088 * 59.99928 * 20 18 16 23 23 H 1.48506 * 109.46925 * 300.00224 * 20 18 16 24 24 C 1.48328 * 103.60559 * 318.43309 * 15 14 12 25 25 C 1.54060 * 104.51823 * 41.53337 * 24 15 14 26 26 C 1.53002 * 112.57863 * 97.43815 * 25 24 15 27 27 C 1.47191 * 126.69991 * 175.09454 * 10 8 7 28 28 H 1.08998 * 109.47417 * 274.43783 * 1 2 3 29 29 H 1.08998 * 109.46755 * 34.44070 * 1 2 3 30 30 H 1.09004 * 109.47188 * 154.42950 * 1 2 3 31 31 H 1.08004 * 126.06387 * 179.71618 * 4 3 2 32 32 H 1.09001 * 110.07097 * 92.16303 * 11 10 8 33 33 H 1.09003 * 110.06838 * 330.64197 * 11 10 8 34 34 H 1.09001 * 110.45939 * 19.21139 * 14 12 11 35 35 H 1.08998 * 110.46215 * 256.63500 * 14 12 11 36 36 H 0.97001 * 119.99569 * 5.84239 * 19 18 16 37 37 H 1.09008 * 110.46214 * 160.28107 * 24 15 14 38 38 H 1.09000 * 110.46346 * 282.85420 * 24 15 14 39 39 H 1.08998 * 109.47079 * 302.11101 * 26 25 24 40 40 H 1.09001 * 109.47322 * 62.11052 * 26 25 24 41 41 H 1.09001 * 109.47106 * 182.11656 * 26 25 24 42 42 H 1.09004 * 110.06518 * 267.83342 * 27 10 8 43 43 H 1.08998 * 110.06707 * 29.29668 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4735 0.7285 -0.0051 5 6 3.5629 -0.6667 -0.0030 6 17 5.0078 -1.6292 -0.0071 7 6 2.2529 -1.1177 0.0036 8 6 1.8008 -2.5167 0.0074 9 8 1.7264 -3.1347 -1.0378 10 7 1.4688 -3.1145 1.1688 11 6 1.5986 -2.5450 2.5199 12 6 1.8773 -3.7256 3.4645 13 1 2.9219 -3.7712 3.7721 14 6 0.9145 -3.6440 4.6695 15 7 0.4760 -5.0446 4.8844 16 6 0.3216 -5.7110 6.0707 17 1 0.3081 -6.7909 6.0856 18 6 0.1826 -4.9988 7.2539 19 7 -0.2071 -3.7419 7.2236 20 14 0.5485 -5.8239 8.8894 21 1 0.3247 -4.8561 9.9932 22 1 1.9618 -6.2793 8.9088 23 1 -0.3506 -6.9925 9.0664 24 6 0.2506 -5.5544 3.5098 25 6 1.4313 -4.9965 2.6925 26 6 2.5660 -6.0103 2.5324 27 6 0.9065 -4.4647 1.3340 28 1 -0.3634 0.0795 1.0245 29 1 -0.3633 0.8475 -0.5812 30 1 -0.3634 -0.9270 -0.4436 31 1 4.3041 1.4188 -0.0106 32 1 0.6722 -2.0473 2.8066 33 1 2.4280 -1.8383 2.5498 34 1 0.0605 -3.0095 4.4326 35 1 1.4366 -3.2688 5.5497 36 1 -0.4784 -3.3384 6.3843 37 1 0.2635 -6.6444 3.5008 38 1 -0.6940 -5.1804 3.1148 39 1 2.9176 -6.3205 3.5164 40 1 2.2017 -6.8802 1.9860 41 1 3.3872 -5.5525 1.9809 42 1 -0.1825 -4.4178 1.3422 43 1 1.2464 -5.1128 0.5262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091675455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:43 Heat of formation + Delta-G solvation = 59.206388 kcal Electronic energy + Delta-G solvation = -28046.630591 eV Core-core repulsion = 24154.882919 eV Total energy + Delta-G solvation = -3891.747672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.76884 -41.66629 -39.83626 -37.71665 -36.90505 -34.74246 -34.43078 -32.66952 -32.08771 -31.43726 -28.34824 -28.03077 -27.42115 -26.86493 -24.73886 -23.33750 -22.81303 -22.25988 -20.68322 -20.14266 -19.40665 -18.77999 -17.97702 -17.16109 -16.96173 -16.84253 -16.29703 -15.99370 -15.78727 -15.62505 -15.33156 -15.00911 -14.91626 -14.35216 -14.22020 -14.16655 -13.76328 -13.71495 -13.54761 -13.18888 -12.97250 -12.91989 -12.82861 -12.54375 -12.46069 -12.38390 -11.91728 -11.81067 -11.71621 -11.67534 -11.60116 -11.48949 -11.31063 -10.60369 -10.44947 -10.01323 -9.91891 -9.03244 -8.30296 -5.34705 0.23412 0.61587 1.01923 1.33167 1.48171 1.59953 1.67131 1.85232 1.88859 2.64310 2.94265 3.21832 3.30881 3.40507 3.42334 3.74629 3.77876 3.88848 4.00541 4.05097 4.16029 4.16774 4.20427 4.28974 4.34679 4.45862 4.52152 4.60024 4.66318 4.72409 4.81842 4.86294 4.93964 5.04617 5.07009 5.11106 5.19689 5.25802 5.36078 5.44846 5.66126 6.12183 6.31535 6.63666 6.72941 6.86257 7.67860 8.35314 9.06302 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.003313 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.742677 B = 8449.187594 C = 8705.579118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.262 5.262 3 N -0.277 5.277 4 C 0.028 3.972 5 C -0.126 4.126 6 Cl -0.020 7.020 7 C -0.022 4.022 8 C 0.614 3.386 9 O -0.549 6.549 10 N -0.593 5.593 11 C 0.118 3.882 12 C -0.100 4.100 13 H 0.087 0.913 14 C 0.151 3.849 15 N -0.623 5.623 16 C -0.330 4.330 17 H 0.062 0.938 18 C -0.078 4.078 19 N -0.954 5.954 20 Si 1.117 2.883 21 H -0.293 1.293 22 H -0.281 1.281 23 H -0.276 1.276 24 C 0.138 3.862 25 C -0.073 4.073 26 C -0.115 4.115 27 C 0.121 3.879 28 H 0.105 0.895 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.225 0.775 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.023 0.977 35 H 0.034 0.966 36 H 0.257 0.743 37 H 0.053 0.947 38 H 0.031 0.969 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.219 7.039 -15.440 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.050 5.050 3 N -0.108 5.108 4 C -0.149 4.149 5 C -0.165 4.165 6 Cl 0.009 6.991 7 C -0.153 4.153 8 C 0.400 3.600 9 O -0.426 6.426 10 N -0.324 5.324 11 C -0.005 4.005 12 C -0.121 4.121 13 H 0.106 0.894 14 C 0.025 3.975 15 N -0.347 5.347 16 C -0.458 4.458 17 H 0.080 0.920 18 C -0.273 4.273 19 N -0.598 5.598 20 Si 0.941 3.059 21 H -0.219 1.219 22 H -0.207 1.207 23 H -0.202 1.202 24 C 0.012 3.988 25 C -0.075 4.075 26 C -0.172 4.172 27 C -0.001 4.001 28 H 0.124 0.876 29 H 0.143 0.857 30 H 0.114 0.886 31 H 0.242 0.758 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.461 7.725 -14.316 16.868 hybrid contribution 0.365 -0.982 -1.376 1.730 sum 4.825 6.743 -15.692 17.748 Atomic orbital electron populations 1.22619 0.70330 1.06770 1.06557 1.45804 1.08714 1.00714 1.49769 1.73264 1.03746 1.13194 1.20595 1.24016 0.94443 0.92343 1.04122 1.21443 0.87050 0.93341 1.14632 1.98359 1.33044 1.70477 1.97262 1.21031 0.91654 0.89286 1.13283 1.16478 0.76916 0.84174 0.82472 1.90849 1.54205 1.65643 1.31908 1.48458 1.60959 1.17323 1.05668 1.22191 1.02465 0.95969 0.79837 1.22948 1.00179 0.93870 0.95114 0.89450 1.21713 0.93893 0.86961 0.94946 1.45340 1.77591 1.10483 1.01333 1.20027 1.48625 0.91560 0.85595 0.92013 1.27086 0.98474 0.97314 1.04443 1.70897 1.44451 1.15235 1.29203 0.82814 0.76865 0.74207 0.71987 1.21903 1.20696 1.20185 1.21893 0.94328 0.97778 0.84797 1.22406 0.96726 0.95300 0.93079 1.21529 0.96403 0.97859 1.01436 1.22469 0.98374 0.82183 0.97093 0.87625 0.85674 0.88595 0.75828 0.90177 0.89974 0.95950 0.94704 0.93291 0.92847 0.95077 0.93362 0.91033 0.92222 0.89752 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 11.21 127.77 1.43 2.50 16 2 N -0.26 -5.63 3.75 -355.92 -1.34 -6.96 16 3 N -0.28 -6.01 11.89 -57.06 -0.68 -6.69 16 4 C 0.03 0.55 12.04 85.22 1.03 1.58 16 5 C -0.13 -3.00 6.89 22.72 0.16 -2.85 16 6 Cl -0.02 -0.46 29.24 -2.72 -0.08 -0.54 16 7 C -0.02 -0.54 5.63 40.76 0.23 -0.32 16 8 C 0.61 17.30 6.98 86.55 0.60 17.91 16 9 O -0.55 -18.62 17.31 -4.18 -0.07 -18.69 16 10 N -0.59 -15.71 3.32 -817.13 -2.71 -18.42 16 11 C 0.12 3.16 6.33 86.50 0.55 3.70 16 12 C -0.10 -3.25 3.71 -9.28 -0.03 -3.28 16 13 H 0.09 2.87 7.93 -2.39 -0.02 2.86 16 14 C 0.15 6.42 4.61 86.52 0.40 6.82 16 15 N -0.62 -29.52 3.26 -687.69 -2.24 -31.76 16 16 C -0.33 -17.83 10.26 84.03 0.86 -16.97 16 17 H 0.06 3.31 7.91 -2.91 -0.02 3.29 16 18 C -0.08 -4.31 5.20 84.86 0.44 -3.87 16 19 N -0.95 -56.51 12.69 21.65 0.27 -56.23 16 20 Si 1.12 49.67 29.97 68.60 2.06 51.73 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 24 C 0.14 5.12 6.39 86.39 0.55 5.67 16 25 C -0.07 -2.20 1.10 -50.35 -0.06 -2.25 16 26 C -0.12 -3.20 8.64 71.98 0.62 -2.57 16 27 C 0.12 3.20 6.28 86.95 0.55 3.75 16 28 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.10 1.36 7.67 -2.38 -0.02 1.34 16 31 H 0.23 2.81 8.06 -2.91 -0.02 2.78 16 32 H 0.08 2.09 7.11 -2.39 -0.02 2.07 16 33 H 0.08 2.09 7.59 -2.39 -0.02 2.07 16 34 H 0.02 0.97 6.81 -2.39 -0.02 0.95 16 35 H 0.03 1.71 7.13 -2.39 -0.02 1.69 16 36 H 0.26 15.18 6.09 -92.71 -0.56 14.62 16 37 H 0.05 1.97 7.92 -2.38 -0.02 1.95 16 38 H 0.03 1.14 7.18 -2.39 -0.02 1.12 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 2.12 7.15 -2.38 -0.02 2.10 16 43 H 0.09 2.26 7.60 -2.39 -0.02 2.25 16 Total: -1.00 -69.72 364.89 3.78 -65.94 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.24 Total: 11.81 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 7.33 Total: 9.82 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -6.69 Total: -120.07 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.07 Total: -18.69 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 2.06 Total: 51.73 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.54 kcal Total: -69.72 3.78 -65.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091675455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.151 kcal (2) G-P(sol) polarization free energy of solvation -69.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds