Wall clock time and date at job start Tue Mar 31 2020 21:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39923 * 125.74760 * 2 1 4 4 C 1.30411 * 108.96307 * 179.73562 * 3 2 1 5 5 C 1.41347 * 108.04458 * 0.40788 * 4 3 2 6 6 C 1.47291 * 126.43621 * 179.85495 * 5 4 3 7 7 O 1.21621 * 120.00438 * 172.96882 * 6 5 4 8 8 N 1.34777 * 120.00041 * 352.96273 * 6 5 4 9 9 C 1.48243 * 126.41677 * 354.03825 * 8 6 5 10 10 C 1.53742 * 105.90293 * 211.08644 * 9 8 6 11 11 H 1.09005 * 112.28550 * 104.64708 * 10 9 8 12 12 C 1.54447 * 109.01599 * 229.74086 * 10 9 8 13 13 N 1.48330 * 104.32558 * 137.92530 * 12 10 9 14 14 C 1.36934 * 128.20199 * 138.19703 * 13 12 10 15 15 H 1.08006 * 120.00091 * 200.51697 * 14 13 12 16 16 C 1.38816 * 119.99977 * 20.51524 * 14 13 12 17 17 N 1.31614 * 120.00028 * 20.97322 * 16 14 13 18 18 Si 1.86801 * 119.99980 * 200.97957 * 16 14 13 19 19 H 1.48493 * 109.46966 * 179.97438 * 18 16 14 20 20 H 1.48504 * 109.47177 * 59.99902 * 18 16 14 21 21 H 1.48500 * 109.46932 * 300.00007 * 18 16 14 22 22 C 1.48337 * 103.60263 * 318.45175 * 13 12 10 23 23 C 1.54034 * 104.52995 * 41.51353 * 22 13 12 24 24 C 1.52998 * 112.12349 * 97.19843 * 23 22 13 25 25 C 1.47193 * 126.70383 * 174.33744 * 8 6 5 26 26 C 1.34341 * 125.75200 * 179.97438 * 2 1 3 27 27 Cl 1.73600 * 126.31881 * 0.02562 * 26 2 1 28 28 H 1.09007 * 109.47110 * 270.00074 * 1 2 3 29 29 H 1.08995 * 109.47221 * 29.99830 * 1 2 3 30 30 H 1.08998 * 109.46694 * 150.00694 * 1 2 3 31 31 H 1.08000 * 125.98106 * 180.25921 * 4 3 2 32 32 H 1.08993 * 110.07843 * 92.14099 * 9 8 6 33 33 H 1.09000 * 110.56327 * 330.28541 * 9 8 6 34 34 H 1.08999 * 110.46080 * 19.21845 * 12 10 9 35 35 H 1.09003 * 110.46857 * 256.63628 * 12 10 9 36 36 H 0.97003 * 119.99740 * 5.91149 * 17 16 14 37 37 H 1.09005 * 110.46306 * 160.25918 * 22 13 12 38 38 H 1.08995 * 110.46508 * 282.84013 * 22 13 12 39 39 H 1.09003 * 109.47495 * 302.41648 * 24 23 22 40 40 H 1.09000 * 109.47339 * 62.41948 * 24 23 22 41 41 H 1.08999 * 109.46895 * 182.41573 * 24 23 22 42 42 H 1.09001 * 110.06893 * 29.38880 * 25 8 6 43 43 H 1.09001 * 110.06945 * 267.87340 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1356 0.0000 4 6 3.5310 0.7590 0.0057 5 6 3.5621 -0.6541 0.0000 6 6 4.7661 -1.5026 0.0005 7 8 4.6606 -2.7079 0.1242 8 7 5.9847 -0.9434 -0.1362 9 6 6.2716 0.4834 -0.4185 10 6 7.5774 0.4980 -1.2299 11 1 7.4046 0.6960 -2.2878 12 6 8.5528 1.5136 -0.5954 13 7 9.8682 0.8290 -0.6283 14 6 11.0900 1.3571 -0.9500 15 1 11.8965 0.7063 -1.2541 16 6 11.2919 2.7290 -0.8852 17 7 10.4984 3.4769 -0.1482 18 14 12.6898 3.5136 -1.8442 19 1 12.6901 4.9797 -1.6084 20 1 12.5073 3.2459 -3.2935 21 1 13.9829 2.9390 -1.3937 22 6 9.5460 -0.5649 -0.2364 23 6 8.2394 -0.8851 -0.9868 24 6 8.4945 -1.6469 -2.2888 25 6 7.2834 -1.6296 -0.0406 26 6 2.2500 -1.0903 0.0005 27 17 1.7156 -2.7419 0.0006 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5137 31 1 4.3909 1.4125 0.0111 32 1 6.4052 1.0300 0.5149 33 1 5.4647 0.9283 -1.0007 34 1 8.2618 1.7304 0.4324 35 1 8.5854 2.4300 -1.1846 36 1 9.8274 3.0621 0.4163 37 1 10.3401 -1.2424 -0.5505 38 1 9.3905 -0.6318 0.8403 39 1 9.1584 -1.0637 -2.9270 40 1 8.9584 -2.6071 -2.0631 41 1 7.5484 -1.8127 -2.8041 42 1 7.1813 -2.6687 -0.3538 43 1 7.6572 -1.5820 0.9822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091786321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:02 Heat of formation + Delta-G solvation = 85.813214 kcal Electronic energy + Delta-G solvation = -27598.682128 eV Core-core repulsion = 23708.088215 eV Total energy + Delta-G solvation = -3890.593913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -41.76086 -40.10903 -38.17890 -37.20135 -35.16576 -33.94882 -32.81298 -31.02133 -30.50643 -29.78483 -27.95274 -26.36424 -25.68428 -25.12600 -23.23278 -21.79236 -21.56796 -20.47673 -19.64619 -18.66610 -17.58663 -17.21415 -16.63256 -16.29318 -15.59441 -15.40985 -14.82773 -14.64666 -14.15627 -14.12477 -13.76807 -13.59260 -13.52753 -13.26229 -13.09691 -12.77195 -12.73251 -12.35973 -12.25973 -12.08567 -11.88754 -11.66034 -11.26986 -11.09871 -10.85780 -10.71489 -10.52719 -10.26811 -10.13668 -10.11602 -9.97863 -9.79928 -9.74298 -9.38454 -9.03456 -8.57462 -8.45024 -7.01140 -6.12400 -3.21063 0.99360 1.02091 1.86421 2.17345 3.06409 3.35822 3.48351 3.51231 3.69203 4.00537 4.51013 4.55351 4.59854 4.65326 4.77175 4.85304 4.91013 4.97693 5.09311 5.18381 5.36232 5.40761 5.50901 5.54716 5.62083 5.87008 5.90672 5.93610 5.97884 6.08066 6.11936 6.20223 6.24203 6.37567 6.47234 6.59286 6.63485 6.78407 6.89924 6.96933 7.05453 7.66682 7.69515 8.29614 8.41345 8.95106 9.75912 10.38701 11.23254 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.021710 B = 0.002878 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.413743 B = 9726.798337 C =10686.514896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.356 5.356 3 N -0.274 5.274 4 C 0.080 3.920 5 C -0.262 4.262 6 C 0.607 3.393 7 O -0.541 6.541 8 N -0.609 5.609 9 C 0.095 3.905 10 C -0.111 4.111 11 H 0.086 0.914 12 C 0.142 3.858 13 N -0.597 5.597 14 C -0.323 4.323 15 H 0.065 0.935 16 C -0.028 4.028 17 N -0.924 5.924 18 Si 1.070 2.930 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.293 1.293 22 C 0.137 3.863 23 C -0.085 4.085 24 C -0.120 4.120 25 C 0.122 3.878 26 C 0.180 3.820 27 Cl 0.027 6.973 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.211 0.789 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.268 0.732 37 H 0.052 0.948 38 H 0.026 0.974 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.078 0.922 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.727 -8.272 -0.636 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.138 5.138 3 N -0.094 5.094 4 C -0.106 4.106 5 C -0.278 4.278 6 C 0.396 3.604 7 O -0.419 6.419 8 N -0.342 5.342 9 C -0.028 4.028 10 C -0.132 4.132 11 H 0.105 0.895 12 C 0.015 3.985 13 N -0.321 5.321 14 C -0.451 4.451 15 H 0.083 0.917 16 C -0.229 4.229 17 N -0.566 5.566 18 Si 0.900 3.100 19 H -0.210 1.210 20 H -0.221 1.221 21 H -0.220 1.220 22 C 0.010 3.990 23 C -0.087 4.087 24 C -0.177 4.177 25 C 0.000 4.000 26 C 0.021 3.979 27 Cl 0.055 6.945 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.227 0.773 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.044 0.956 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.007 -6.587 -0.989 21.086 hybrid contribution -0.340 -2.229 0.490 2.308 sum -20.346 -8.817 -0.500 22.180 Atomic orbital electron populations 1.22098 0.73015 1.05420 1.04442 1.48593 1.07511 1.02399 1.55334 1.77399 1.02060 1.05156 1.24830 1.24779 0.95685 0.93826 0.96298 1.19859 0.91736 0.93896 1.22312 1.16601 0.80863 0.86319 0.76586 1.90794 1.85928 1.13828 1.51388 1.48535 1.04970 1.10310 1.70342 1.22857 0.97991 0.82025 0.99903 1.23129 0.93528 0.96771 0.99772 0.89525 1.21856 0.84872 0.94780 0.96990 1.45111 1.02682 1.05241 1.79099 1.19764 0.88340 0.93454 1.43567 0.91719 1.25829 1.03639 0.93353 1.00040 1.70781 1.22873 1.38296 1.24608 0.83441 0.74636 0.76284 0.75687 1.21025 1.22066 1.22019 1.21796 0.93099 0.88993 0.95107 1.22268 0.96390 0.94345 0.95730 1.21580 1.00926 0.99239 0.95944 1.22143 0.81353 0.97112 0.99430 1.22008 0.90681 0.84040 1.01132 1.98448 1.89850 1.09903 1.96266 0.89662 0.88070 0.88983 0.77294 0.90473 0.90173 0.95386 0.91270 0.92056 0.92989 0.95602 0.91706 0.92921 0.93371 0.90395 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 11.28 59.85 0.68 1.20 16 2 N -0.36 -3.77 3.98 -64.32 -0.26 -4.03 16 3 N -0.27 -3.33 12.49 30.87 0.39 -2.94 16 4 C 0.08 0.98 10.28 -16.97 -0.17 0.80 16 5 C -0.26 -3.59 6.06 -105.02 -0.64 -4.22 16 6 C 0.61 9.54 7.86 -12.58 -0.10 9.44 16 7 O -0.54 -9.74 15.88 5.26 0.08 -9.66 16 8 N -0.61 -9.10 3.34 -172.12 -0.57 -9.68 16 9 C 0.09 1.31 4.93 -2.70 -0.01 1.30 16 10 C -0.11 -1.85 3.71 -88.29 -0.33 -2.17 16 11 H 0.09 1.43 7.93 -51.93 -0.41 1.02 16 12 C 0.14 2.99 4.62 -2.27 -0.01 2.97 16 13 N -0.60 -14.30 3.25 -168.73 -0.55 -14.85 16 14 C -0.32 -8.78 10.25 -15.06 -0.15 -8.94 16 15 H 0.07 1.75 7.91 -52.48 -0.42 1.34 16 16 C -0.03 -0.76 5.20 -17.43 -0.09 -0.85 16 17 N -0.92 -26.99 12.71 55.49 0.71 -26.28 16 18 Si 1.07 24.73 29.97 -169.99 -5.09 19.64 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.14 2.69 6.36 -2.49 -0.02 2.67 16 23 C -0.08 -1.39 1.07 -152.39 -0.16 -1.56 16 24 C -0.12 -1.82 8.59 37.16 0.32 -1.50 16 25 C 0.12 1.87 6.27 -3.28 -0.02 1.85 16 26 C 0.18 2.20 7.52 -16.44 -0.12 2.08 16 27 Cl 0.03 0.30 27.37 -51.86 -1.42 -1.12 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.38 7.77 -51.93 -0.40 -0.02 16 31 H 0.21 2.16 4.98 -52.49 -0.26 1.90 16 32 H 0.08 1.04 6.99 -51.93 -0.36 0.67 16 33 H 0.08 0.94 5.39 -51.93 -0.28 0.66 16 34 H 0.03 0.60 6.80 -51.93 -0.35 0.25 16 35 H 0.07 1.64 7.20 -51.93 -0.37 1.26 16 36 H 0.27 7.76 6.15 -40.82 -0.25 7.51 16 37 H 0.05 1.02 7.90 -51.93 -0.41 0.61 16 38 H 0.03 0.51 7.16 -51.93 -0.37 0.14 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.20 7.58 -51.93 -0.39 0.80 16 43 H 0.07 1.07 7.10 -51.93 -0.37 0.70 16 LS Contribution 355.89 15.07 5.36 5.36 Total: -1.00 -33.22 355.89 -7.76 -40.97 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -5.57 Total: -0.48 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -0.84 Total: 3.06 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.29 Total: -57.78 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.09 Total: 19.64 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.42 Total: -1.12 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.22 -7.76 -40.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091786321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.788 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds