Wall clock time and date at job start Tue Mar 31 2020 21:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39923 * 125.74760 * 2 1 4 4 C 1.30411 * 108.96307 * 179.73562 * 3 2 1 5 5 C 1.41347 * 108.04458 * 0.40788 * 4 3 2 6 6 C 1.47291 * 126.43621 * 179.85495 * 5 4 3 7 7 O 1.21621 * 120.00438 * 172.96882 * 6 5 4 8 8 N 1.34777 * 120.00041 * 352.96273 * 6 5 4 9 9 C 1.48243 * 126.41677 * 354.03825 * 8 6 5 10 10 C 1.53742 * 105.90293 * 211.08644 * 9 8 6 11 11 H 1.09005 * 112.28550 * 104.64708 * 10 9 8 12 12 C 1.54447 * 109.01599 * 229.74086 * 10 9 8 13 13 N 1.48330 * 104.32558 * 137.92530 * 12 10 9 14 14 C 1.36934 * 128.20199 * 138.19703 * 13 12 10 15 15 H 1.08006 * 120.00091 * 200.51697 * 14 13 12 16 16 C 1.38816 * 119.99977 * 20.51524 * 14 13 12 17 17 N 1.31614 * 120.00028 * 20.97322 * 16 14 13 18 18 Si 1.86801 * 119.99980 * 200.97957 * 16 14 13 19 19 H 1.48493 * 109.46966 * 179.97438 * 18 16 14 20 20 H 1.48504 * 109.47177 * 59.99902 * 18 16 14 21 21 H 1.48500 * 109.46932 * 300.00007 * 18 16 14 22 22 C 1.48337 * 103.60263 * 318.45175 * 13 12 10 23 23 C 1.54034 * 104.52995 * 41.51353 * 22 13 12 24 24 C 1.52998 * 112.12349 * 97.19843 * 23 22 13 25 25 C 1.47193 * 126.70383 * 174.33744 * 8 6 5 26 26 C 1.34341 * 125.75200 * 179.97438 * 2 1 3 27 27 Cl 1.73600 * 126.31881 * 0.02562 * 26 2 1 28 28 H 1.09007 * 109.47110 * 270.00074 * 1 2 3 29 29 H 1.08995 * 109.47221 * 29.99830 * 1 2 3 30 30 H 1.08998 * 109.46694 * 150.00694 * 1 2 3 31 31 H 1.08000 * 125.98106 * 180.25921 * 4 3 2 32 32 H 1.08993 * 110.07843 * 92.14099 * 9 8 6 33 33 H 1.09000 * 110.56327 * 330.28541 * 9 8 6 34 34 H 1.08999 * 110.46080 * 19.21845 * 12 10 9 35 35 H 1.09003 * 110.46857 * 256.63628 * 12 10 9 36 36 H 0.97003 * 119.99740 * 5.91149 * 17 16 14 37 37 H 1.09005 * 110.46306 * 160.25918 * 22 13 12 38 38 H 1.08995 * 110.46508 * 282.84013 * 22 13 12 39 39 H 1.09003 * 109.47495 * 302.41648 * 24 23 22 40 40 H 1.09000 * 109.47339 * 62.41948 * 24 23 22 41 41 H 1.08999 * 109.46895 * 182.41573 * 24 23 22 42 42 H 1.09001 * 110.06893 * 29.38880 * 25 8 6 43 43 H 1.09001 * 110.06945 * 267.87340 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1356 0.0000 4 6 3.5310 0.7590 0.0057 5 6 3.5621 -0.6541 0.0000 6 6 4.7661 -1.5026 0.0005 7 8 4.6606 -2.7079 0.1242 8 7 5.9847 -0.9434 -0.1362 9 6 6.2716 0.4834 -0.4185 10 6 7.5774 0.4980 -1.2299 11 1 7.4046 0.6960 -2.2878 12 6 8.5528 1.5136 -0.5954 13 7 9.8682 0.8290 -0.6283 14 6 11.0900 1.3571 -0.9500 15 1 11.8965 0.7063 -1.2541 16 6 11.2919 2.7290 -0.8852 17 7 10.4984 3.4769 -0.1482 18 14 12.6898 3.5136 -1.8442 19 1 12.6901 4.9797 -1.6084 20 1 12.5073 3.2459 -3.2935 21 1 13.9829 2.9390 -1.3937 22 6 9.5460 -0.5649 -0.2364 23 6 8.2394 -0.8851 -0.9868 24 6 8.4945 -1.6469 -2.2888 25 6 7.2834 -1.6296 -0.0406 26 6 2.2500 -1.0903 0.0005 27 17 1.7156 -2.7419 0.0006 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5137 31 1 4.3909 1.4125 0.0111 32 1 6.4052 1.0300 0.5149 33 1 5.4647 0.9283 -1.0007 34 1 8.2618 1.7304 0.4324 35 1 8.5854 2.4300 -1.1846 36 1 9.8274 3.0621 0.4163 37 1 10.3401 -1.2424 -0.5505 38 1 9.3905 -0.6318 0.8403 39 1 9.1584 -1.0637 -2.9270 40 1 8.9584 -2.6071 -2.0631 41 1 7.5484 -1.8127 -2.8041 42 1 7.1813 -2.6687 -0.3538 43 1 7.6572 -1.5820 0.9822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091786321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:01 Heat of formation + Delta-G solvation = 64.812980 kcal Electronic energy + Delta-G solvation = -27599.592766 eV Core-core repulsion = 23708.088215 eV Total energy + Delta-G solvation = -3891.504552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.68261 -41.41802 -39.50031 -38.08607 -36.73207 -34.94371 -34.24593 -32.55596 -31.62618 -31.25178 -28.81245 -27.69657 -27.21900 -26.58411 -24.61582 -22.98090 -22.58092 -22.00007 -20.77396 -20.03903 -19.33150 -18.39557 -17.68965 -17.18194 -16.77449 -16.58051 -16.18630 -15.88469 -15.77806 -15.50302 -15.30917 -14.91203 -14.72048 -14.32699 -14.12516 -13.81867 -13.74978 -13.66179 -13.29462 -13.16214 -13.02051 -12.92474 -12.77830 -12.50542 -12.35169 -12.32387 -11.97810 -11.88649 -11.64135 -11.57057 -11.51714 -11.37155 -10.94101 -10.62342 -10.56224 -10.03225 -9.64338 -8.98492 -8.26921 -5.31575 0.06006 0.14157 0.90175 1.42749 1.61374 1.68789 1.87156 1.91947 2.22808 2.67157 3.13425 3.26788 3.39074 3.40998 3.70140 3.77506 3.85693 3.89212 4.08155 4.13798 4.18987 4.25941 4.28807 4.34460 4.44228 4.57207 4.63340 4.69032 4.75516 4.84002 4.90423 4.97359 5.00294 5.08671 5.12371 5.23864 5.27437 5.35485 5.38412 5.42774 5.70236 6.16965 6.35328 6.47884 6.90341 7.10741 7.71389 8.39943 9.09252 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.021710 B = 0.002878 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.413743 B = 9726.798337 C =10686.514896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.347 5.347 3 N -0.286 5.286 4 C 0.083 3.917 5 C -0.288 4.288 6 C 0.608 3.392 7 O -0.569 6.569 8 N -0.608 5.608 9 C 0.103 3.897 10 C -0.101 4.101 11 H 0.091 0.909 12 C 0.149 3.851 13 N -0.623 5.623 14 C -0.329 4.329 15 H 0.059 0.941 16 C -0.079 4.079 17 N -0.953 5.953 18 Si 1.118 2.882 19 H -0.292 1.292 20 H -0.280 1.280 21 H -0.278 1.278 22 C 0.135 3.865 23 C -0.075 4.075 24 C -0.113 4.113 25 C 0.128 3.872 26 C 0.179 3.821 27 Cl 0.035 6.965 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.222 0.778 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.023 0.977 35 H 0.037 0.963 36 H 0.257 0.743 37 H 0.050 0.950 38 H 0.026 0.974 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.376 -8.900 -1.255 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.128 5.128 3 N -0.107 5.107 4 C -0.103 4.103 5 C -0.304 4.304 6 C 0.398 3.602 7 O -0.449 6.449 8 N -0.340 5.340 9 C -0.019 4.019 10 C -0.122 4.122 11 H 0.110 0.890 12 C 0.023 3.977 13 N -0.348 5.348 14 C -0.458 4.458 15 H 0.077 0.923 16 C -0.275 4.275 17 N -0.596 5.596 18 Si 0.943 3.057 19 H -0.218 1.218 20 H -0.206 1.206 21 H -0.204 1.204 22 C 0.010 3.990 23 C -0.077 4.077 24 C -0.170 4.170 25 C 0.005 3.995 26 C 0.019 3.981 27 Cl 0.064 6.936 28 H 0.121 0.879 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.238 0.762 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.041 0.959 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.692 -7.235 -1.609 22.923 hybrid contribution 0.080 -2.107 0.731 2.232 sum -21.612 -9.342 -0.878 23.561 Atomic orbital electron populations 1.22562 0.70331 1.07093 1.06166 1.48964 1.08908 1.01446 1.53505 1.77369 1.02223 1.05949 1.25151 1.24904 0.96177 0.93304 0.95943 1.19784 0.91557 0.94378 1.24650 1.16850 0.81285 0.86180 0.75845 1.90772 1.86312 1.15024 1.52808 1.48497 1.04762 1.10488 1.70268 1.22816 0.97200 0.81781 1.00131 1.22976 0.93835 0.95279 1.00063 0.89050 1.21766 0.84966 0.94557 0.96442 1.45359 1.02796 1.07072 1.79605 1.20006 0.89584 0.93692 1.42485 0.92295 1.27117 1.05455 0.94288 1.00624 1.70881 1.24024 1.38513 1.26203 0.82799 0.72834 0.74949 0.75167 1.21845 1.20626 1.20355 1.21923 0.94740 0.86888 0.95474 1.22140 0.94792 0.94558 0.96218 1.21522 1.01317 0.99370 0.94838 1.22019 0.81372 0.97120 0.98992 1.22099 0.90740 0.84786 1.00524 1.98451 1.89687 1.09342 1.96164 0.87877 0.86562 0.87240 0.76160 0.89911 0.87614 0.95950 0.94453 0.93242 0.93166 0.95621 0.93426 0.91474 0.92085 0.89999 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 11.28 127.77 1.44 2.11 16 2 N -0.35 -6.52 3.98 -357.40 -1.42 -7.95 16 3 N -0.29 -6.35 12.49 -56.26 -0.70 -7.05 16 4 C 0.08 1.85 10.28 85.67 0.88 2.73 16 5 C -0.29 -7.39 6.06 -20.12 -0.12 -7.51 16 6 C 0.61 18.19 7.86 86.62 0.68 18.87 16 7 O -0.57 -19.78 15.88 -4.10 -0.07 -19.85 16 8 N -0.61 -17.21 3.34 -816.71 -2.73 -19.93 16 9 C 0.10 2.68 4.93 86.29 0.43 3.11 16 10 C -0.10 -3.27 3.71 -9.28 -0.03 -3.30 16 11 H 0.09 2.91 7.93 -2.38 -0.02 2.89 16 12 C 0.15 6.38 4.62 86.52 0.40 6.78 16 13 N -0.62 -30.33 3.25 -687.74 -2.23 -32.56 16 14 C -0.33 -18.14 10.25 84.03 0.86 -17.28 16 15 H 0.06 3.23 7.91 -2.91 -0.02 3.21 16 16 C -0.08 -4.46 5.20 84.86 0.44 -4.02 16 17 N -0.95 -56.97 12.71 21.65 0.28 -56.70 16 18 Si 1.12 50.28 29.97 68.60 2.06 52.34 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 20 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 22 C 0.14 5.32 6.36 86.38 0.55 5.87 16 23 C -0.07 -2.37 1.07 -50.81 -0.05 -2.43 16 24 C -0.11 -3.28 8.59 71.98 0.62 -2.66 16 25 C 0.13 3.73 6.27 86.50 0.54 4.27 16 26 C 0.18 4.04 7.52 84.32 0.63 4.68 16 27 Cl 0.04 0.72 27.37 -2.72 -0.07 0.65 16 28 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.11 0.58 7.77 -2.39 -0.02 0.56 16 31 H 0.22 4.12 4.98 -2.91 -0.01 4.10 16 32 H 0.08 2.11 6.99 -2.39 -0.02 2.10 16 33 H 0.11 2.26 5.39 -2.39 -0.01 2.24 16 34 H 0.02 0.99 6.80 -2.39 -0.02 0.97 16 35 H 0.04 1.82 7.20 -2.39 -0.02 1.80 16 36 H 0.26 15.39 6.15 -92.71 -0.57 14.82 16 37 H 0.05 1.96 7.90 -2.38 -0.02 1.94 16 38 H 0.03 1.02 7.16 -2.39 -0.02 1.00 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.08 2.37 7.58 -2.39 -0.02 2.35 16 43 H 0.07 2.05 7.10 -2.39 -0.02 2.03 16 Total: -1.00 -72.17 355.89 3.61 -68.56 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.24 Total: 11.27 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 7.26 Total: 11.22 kcal Atomic # 7 Polarization: -117.37 SS G_CDS: -6.81 Total: -124.18 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.07 Total: -19.85 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.06 Total: 52.34 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -0.07 Total: 0.65 kcal Total: -72.17 3.61 -68.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091786321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.374 kcal (2) G-P(sol) polarization free energy of solvation -72.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds