Wall clock time and date at job start Tue Mar 31 2020 20:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00492 * 2 1 4 4 H 1.48501 * 109.47051 * 274.98787 * 3 2 1 5 5 H 1.48502 * 109.46961 * 34.98176 * 3 2 1 6 6 H 1.48494 * 109.47406 * 154.98453 * 3 2 1 7 7 C 1.38813 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00303 * 185.08820 * 7 2 1 9 9 N 1.36937 * 120.00250 * 5.08926 * 7 2 1 10 10 C 1.47749 * 134.41649 * 173.50766 * 9 7 2 11 11 C 1.53024 * 85.83154 * 156.06620 * 10 9 7 12 12 C 1.47751 * 134.40998 * 353.55548 * 9 7 2 13 13 C 1.53513 * 115.30843 * 266.34361 * 11 10 9 14 14 C 1.54733 * 101.50067 * 254.65974 * 13 11 10 15 15 H 1.09007 * 110.46280 * 94.40448 * 14 13 11 16 16 N 1.46492 * 110.57521 * 216.93795 * 14 13 11 17 17 C 1.34782 * 120.00264 * 201.39664 * 16 14 13 18 18 O 1.21282 * 119.99833 * 0.02562 * 17 16 14 19 19 C 1.50694 * 120.00139 * 180.02562 * 17 16 14 20 20 H 1.08999 * 115.55525 * 325.67817 * 19 17 16 21 21 C 1.53007 * 117.49648 * 111.38304 * 19 17 16 22 22 C 1.52998 * 59.99984 * 107.49236 * 21 19 17 23 23 F 1.39905 * 117.49832 * 252.51529 * 22 21 19 24 24 F 1.39902 * 117.50259 * 107.49160 * 22 21 19 25 25 C 1.51657 * 104.30333 * 335.70252 * 14 13 11 26 26 N 1.30854 * 141.38438 * 196.60186 * 25 14 13 27 27 C 1.33979 * 109.34584 * 180.02562 * 26 25 14 28 28 C 1.34520 * 108.04927 * 359.60292 * 27 26 25 29 29 N 1.35091 * 110.00576 * 16.22392 * 25 14 13 30 30 H 0.97001 * 119.99953 * 0.02562 * 1 2 3 31 31 H 1.09003 * 113.81021 * 41.84201 * 10 9 7 32 32 H 1.08998 * 113.92483 * 270.31098 * 10 9 7 33 33 H 1.09007 * 113.81428 * 89.70738 * 12 9 7 34 34 H 1.09005 * 113.81809 * 318.16717 * 12 9 7 35 35 H 1.08994 * 111.02881 * 136.60143 * 13 11 10 36 36 H 1.09011 * 111.05023 * 12.72485 * 13 11 10 37 37 H 0.96997 * 120.00235 * 21.40819 * 16 14 13 38 38 H 1.08999 * 117.49866 * 214.98159 * 21 19 17 39 39 H 1.09001 * 117.49834 * 0.02562 * 21 19 17 40 40 H 1.08007 * 125.97202 * 179.86180 * 27 26 25 41 41 H 1.07998 * 126.54870 * 180.18272 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0870 -1.2041 0.0835 9 7 1.3296 -2.3858 -0.1041 10 6 1.7311 -3.7996 -0.2553 11 6 0.3719 -4.1354 0.3625 12 6 -0.0999 -2.7593 -0.1119 13 6 0.3751 -4.3396 1.8840 14 6 0.2462 -5.8779 1.9892 15 1 1.2305 -6.3375 2.0796 16 7 -0.5970 -6.2472 3.1288 17 6 -0.5028 -7.4801 3.6653 18 8 0.2804 -8.2835 3.2049 19 6 -1.3706 -7.8601 4.8372 20 1 -1.5857 -7.0576 5.5428 21 6 -2.4645 -8.9027 4.5975 22 6 -1.2167 -9.2741 5.4011 23 9 -0.2809 -10.1151 4.7893 24 9 -1.3632 -9.4380 6.7828 25 6 -0.4130 -6.2886 0.6866 26 7 -1.0481 -7.2900 0.1333 27 6 -1.3754 -6.9671 -1.1252 28 6 -0.9368 -5.7177 -1.3624 29 7 -0.3249 -5.2843 -0.2127 30 1 -0.4850 0.8401 -0.0004 31 1 2.5797 -4.0850 0.3665 32 1 1.8351 -4.1213 -1.2915 33 1 -0.5477 -2.7661 -1.1058 34 1 -0.6993 -2.2220 0.6231 35 1 -0.4777 -3.8432 2.3470 36 1 1.3113 -3.9948 2.3234 37 1 -1.2232 -5.6046 3.4972 38 1 -3.3996 -8.7860 5.1452 39 1 -2.5562 -9.3139 3.5922 40 1 -1.9032 -7.5979 -1.8252 41 1 -1.0446 -5.1621 -2.2822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092369249.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:26 Heat of formation + Delta-G solvation = 43.428971 kcal Electronic energy + Delta-G solvation = -29310.317257 eV Core-core repulsion = 24866.088745 eV Total energy + Delta-G solvation = -4444.228512 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.85656 -47.48892 -42.33938 -39.85883 -38.63480 -36.18749 -35.36733 -33.45849 -31.86625 -30.73542 -28.23559 -27.55764 -25.51407 -25.39448 -23.81536 -22.79479 -22.20530 -21.27159 -20.70801 -19.80323 -18.75033 -18.53034 -17.36346 -17.09064 -16.68394 -16.30693 -15.84895 -15.79568 -15.17262 -15.00546 -14.66596 -14.24007 -14.14467 -14.09783 -14.02574 -13.77289 -13.68174 -13.50339 -13.35796 -13.00783 -12.77213 -12.40450 -12.24968 -11.95358 -11.70660 -11.49009 -11.20591 -11.07520 -10.95163 -10.59366 -10.44930 -10.26363 -9.99301 -9.86639 -9.60046 -9.33934 -9.10106 -9.02102 -8.10297 -7.21319 -6.04419 -3.38366 2.09700 2.23740 2.58740 2.78415 3.05766 3.15098 3.25442 3.32292 3.33018 3.47602 3.90884 4.02567 4.09464 4.24999 4.31666 4.45390 4.56775 4.66783 4.85045 4.93577 5.05029 5.23233 5.24582 5.33392 5.37233 5.43755 5.60438 5.76952 5.85012 5.93577 5.96952 6.13802 6.19904 6.25269 6.70592 6.73862 6.82422 7.13230 7.19026 7.26403 7.41872 7.68875 8.03890 8.43272 8.76990 9.43403 10.24356 11.13185 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.002824 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.247062 B = 9910.942838 C =10922.405562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.000 4.000 3 Si 0.915 3.085 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.231 4.231 8 H 0.086 0.914 9 N -0.599 5.599 10 C 0.122 3.878 11 C 0.100 3.900 12 C 0.176 3.824 13 C -0.093 4.093 14 C 0.231 3.769 15 H 0.116 0.884 16 N -0.708 5.708 17 C 0.546 3.454 18 O -0.505 6.505 19 C -0.194 4.194 20 H 0.149 0.851 21 C -0.146 4.146 22 C 0.228 3.772 23 F -0.137 7.137 24 F -0.158 7.158 25 C 0.163 3.837 26 N -0.471 5.471 27 C -0.037 4.037 28 C -0.022 4.022 29 N -0.451 5.451 30 H 0.258 0.742 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.405 0.595 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.169 0.831 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.192 -12.868 8.348 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.198 4.198 3 Si 0.744 3.256 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.358 4.358 8 H 0.104 0.896 9 N -0.326 5.326 10 C -0.005 4.005 11 C 0.015 3.985 12 C 0.050 3.950 13 C -0.132 4.132 14 C 0.124 3.876 15 H 0.134 0.866 16 N -0.360 5.360 17 C 0.330 3.670 18 O -0.379 6.379 19 C -0.217 4.217 20 H 0.167 0.833 21 C -0.184 4.184 22 C 0.191 3.809 23 F -0.117 7.117 24 F -0.139 7.139 25 C -0.101 4.101 26 N -0.190 5.190 27 C -0.186 4.186 28 C -0.156 4.156 29 N -0.133 5.133 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.240 0.760 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.187 0.813 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.663 -13.647 8.335 16.964 hybrid contribution 0.268 1.991 -0.589 2.093 sum -5.396 -11.656 7.746 15.000 Atomic orbital electron populations 1.69797 1.05179 1.25971 1.55347 1.24852 0.95725 0.97795 1.01412 0.86067 0.78810 0.82999 0.77697 1.21416 1.21496 1.20309 1.19003 0.90893 0.81295 1.44646 0.89633 1.45769 1.01611 1.00540 1.84713 1.22799 0.93005 0.86687 0.97968 1.23757 0.95896 0.85944 0.92907 1.22354 0.88866 0.84814 0.98956 1.22566 1.05903 0.91557 0.93196 1.20013 0.93775 0.94889 0.78914 0.86627 1.45741 1.42682 1.14615 1.32995 1.19148 0.82943 0.82150 0.82773 1.90829 1.36802 1.49129 1.61115 1.23622 1.02247 0.95036 1.00749 0.83301 1.24298 0.93418 0.97174 1.03502 1.19476 0.94264 0.91487 0.75671 1.93142 1.65779 1.71679 1.81130 1.93047 1.95755 1.96022 1.29032 1.24463 1.04299 0.86843 0.94504 1.69775 1.15106 1.26584 1.07507 1.22225 1.07331 0.94807 0.94221 1.22388 1.03950 0.97727 0.91568 1.46543 1.40472 1.14987 1.11290 0.93251 0.92300 0.93957 0.94546 0.89985 0.88591 0.86922 0.75970 0.84938 0.85031 0.81340 0.81462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.94 11.52 55.49 0.64 -24.30 16 2 C 0.00 -0.01 5.50 -17.43 -0.10 -0.10 16 3 Si 0.91 20.57 29.56 -169.99 -5.02 15.54 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.23 -5.90 10.69 -15.06 -0.16 -6.06 16 8 H 0.09 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.60 -13.71 3.69 -182.65 -0.67 -14.39 16 10 C 0.12 2.28 8.39 -3.35 -0.03 2.26 16 11 C 0.10 1.69 1.56 -136.73 -0.21 1.48 16 12 C 0.18 3.70 6.93 -3.35 -0.02 3.68 16 13 C -0.09 -1.29 6.17 -25.55 -0.16 -1.45 16 14 C 0.23 3.19 3.23 -67.70 -0.22 2.97 16 15 H 0.12 1.68 7.66 -51.93 -0.40 1.28 16 16 N -0.71 -7.96 5.16 -53.58 -0.28 -8.24 16 17 C 0.55 6.84 7.60 -10.99 -0.08 6.76 16 18 O -0.51 -8.56 14.85 5.56 0.08 -8.48 16 19 C -0.19 -1.71 6.17 -91.77 -0.57 -2.28 16 20 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16 21 C -0.15 -1.10 10.20 -26.73 -0.27 -1.37 16 22 C 0.23 2.38 5.19 -26.73 -0.14 2.24 16 23 F -0.14 -1.92 15.71 2.25 0.04 -1.88 16 24 F -0.16 -1.62 17.60 2.25 0.04 -1.58 16 25 C 0.16 2.71 8.22 -154.60 -1.27 1.44 16 26 N -0.47 -8.36 11.25 -10.49 -0.12 -8.48 16 27 C -0.04 -0.57 11.86 -17.93 -0.21 -0.79 16 28 C -0.02 -0.35 12.03 -16.43 -0.20 -0.55 16 29 N -0.45 -7.49 3.37 -103.51 -0.35 -7.84 16 30 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.82 8.14 -51.92 -0.42 0.39 16 34 H 0.08 1.86 7.33 -51.93 -0.38 1.48 16 35 H 0.10 1.21 7.77 -51.93 -0.40 0.81 16 36 H 0.11 1.50 7.92 -51.92 -0.41 1.09 16 37 H 0.40 3.33 8.39 -40.82 -0.34 2.99 16 38 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.17 2.09 8.06 -52.48 -0.42 1.66 16 41 H 0.17 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -33.26 357.86 -8.75 -42.01 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.86 Total: 4.01 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -3.64 Total: 8.24 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.78 Total: -63.25 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.08 Total: -3.47 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.26 -8.75 -42.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092369249.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.441 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds