Wall clock time and date at job start Tue Mar 31 2020 20:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00356 * 2 1 4 4 H 1.48498 * 109.47492 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46891 * 300.00001 * 3 2 1 6 6 H 1.48499 * 109.47156 * 59.99854 * 3 2 1 7 7 C 1.38820 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99795 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99606 * 359.97438 * 7 2 1 10 10 C 1.47762 * 134.40588 * 179.97438 * 9 7 2 11 11 C 1.53051 * 85.82136 * 156.05148 * 10 9 7 12 12 C 1.47754 * 134.41895 * 0.02933 * 9 7 2 13 13 C 1.53509 * 115.27900 * 139.92033 * 11 10 9 14 14 C 1.54726 * 101.52071 * 154.98428 * 13 11 10 15 15 H 1.08991 * 110.46542 * 216.91785 * 14 13 11 16 16 N 1.46511 * 110.46087 * 94.46292 * 14 13 11 17 17 C 1.34770 * 119.99717 * 154.99834 * 16 14 13 18 18 O 1.21288 * 120.00091 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99999 * 179.97438 * 17 16 14 20 20 H 1.09002 * 115.54929 * 34.41763 * 19 17 16 21 21 C 1.52999 * 117.51845 * 248.71846 * 19 17 16 22 22 C 1.53005 * 117.49884 * 180.08744 * 19 17 16 23 23 F 1.39901 * 117.49767 * 214.99865 * 22 19 17 24 24 F 1.39896 * 117.49894 * 0.02562 * 22 19 17 25 25 C 1.51646 * 104.31389 * 335.75850 * 14 13 11 26 26 N 1.30858 * 141.39545 * 196.29685 * 25 14 13 27 27 C 1.33978 * 109.34968 * 180.18094 * 26 25 14 28 28 C 1.34520 * 108.05080 * 359.90758 * 27 26 25 29 29 N 1.35094 * 109.99678 * 16.26706 * 25 14 13 30 30 H 0.97002 * 119.99645 * 359.97438 * 1 2 3 31 31 H 1.08997 * 113.81793 * 41.82968 * 10 9 7 32 32 H 1.08998 * 113.92556 * 270.28619 * 10 9 7 33 33 H 1.09004 * 113.81706 * 89.72800 * 12 9 7 34 34 H 1.09001 * 113.81717 * 318.18494 * 12 9 7 35 35 H 1.09000 * 111.01274 * 36.92969 * 13 11 10 36 36 H 1.08994 * 111.04810 * 273.06171 * 13 11 10 37 37 H 0.96997 * 119.99554 * 334.99845 * 16 14 13 38 38 H 1.09003 * 117.50034 * 0.02562 * 21 19 17 39 39 H 1.08995 * 117.49797 * 145.02631 * 21 19 17 40 40 H 1.08007 * 125.97689 * 179.88512 * 27 26 25 41 41 H 1.07990 * 126.54637 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 1.7225 -3.8113 0.0019 11 6 0.3493 -4.0785 0.6227 12 6 -0.1056 -2.7558 0.0019 13 6 -0.3724 -5.3301 0.1038 14 6 -1.2996 -5.6685 1.2954 15 1 -1.3806 -6.7482 1.4206 16 7 -2.6249 -5.0761 1.0975 17 6 -3.7023 -5.6196 1.6975 18 8 -3.5747 -6.5988 2.4018 19 6 -5.0654 -5.0099 1.4944 20 1 -5.2461 -4.5802 0.5092 21 6 -5.7187 -4.3231 2.6954 22 6 -6.2482 -5.6719 2.2042 23 9 -7.4790 -5.6791 1.5390 24 9 -5.9815 -6.7964 2.9925 25 6 -0.6129 -5.0430 2.4942 26 7 -0.6091 -5.0750 3.8023 27 6 0.3021 -4.2086 4.2649 28 6 0.8886 -3.6169 3.2087 29 7 0.3107 -4.1473 2.0822 30 1 -0.4850 0.8401 0.0004 31 1 2.5570 -4.0354 0.6664 32 1 1.8453 -4.2362 -0.9943 33 1 -0.5330 -2.8617 -0.9953 34 1 -0.7169 -2.1450 0.6661 35 1 0.3338 -6.1389 -0.0838 36 1 -0.9523 -5.1048 -0.7911 37 1 -2.7267 -4.2928 0.5346 38 1 -5.1623 -4.3116 3.6327 39 1 -6.3291 -3.4414 2.5003 40 1 0.5264 -4.0182 5.3042 41 1 1.6665 -2.8686 3.2409 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092369251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:30 Heat of formation + Delta-G solvation = 45.320161 kcal Electronic energy + Delta-G solvation = -29804.523008 eV Core-core repulsion = 25360.376504 eV Total energy + Delta-G solvation = -4444.146504 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.80022 -47.43462 -42.27657 -39.80497 -38.52944 -36.14626 -35.35095 -33.27003 -31.81480 -30.68689 -28.34525 -27.45985 -25.54131 -25.31953 -23.84803 -22.72741 -21.83529 -21.34355 -20.59881 -19.95041 -18.74660 -18.45487 -17.29872 -17.05198 -16.62843 -16.31822 -15.89812 -15.28444 -15.11136 -15.07580 -14.43323 -14.33820 -14.10002 -14.04767 -13.98762 -13.72440 -13.60321 -13.46843 -13.31347 -13.04978 -12.70420 -12.43570 -12.29973 -12.06604 -11.78919 -11.42744 -11.39328 -11.03364 -10.70525 -10.46066 -10.38736 -10.06851 -9.95759 -9.83439 -9.54062 -9.32831 -9.07471 -8.97251 -7.98901 -7.19810 -6.01727 -3.35694 2.14649 2.27466 2.71292 2.87689 3.16127 3.21674 3.25003 3.30880 3.33125 3.61982 3.96943 4.02090 4.15398 4.24360 4.37920 4.46625 4.64235 4.70935 4.75052 4.93572 5.15168 5.29734 5.31829 5.41505 5.48837 5.50536 5.67041 5.70514 5.73292 5.93924 6.08580 6.12603 6.16493 6.29400 6.64800 6.84576 6.87509 7.20182 7.25632 7.32495 7.56379 7.71220 8.07746 8.54706 8.78686 9.45668 10.25972 11.15374 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.003345 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.742483 B = 8367.518570 C = 9171.433028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.001 4.001 3 Si 0.914 3.086 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.230 4.230 8 H 0.083 0.917 9 N -0.604 5.604 10 C 0.121 3.879 11 C 0.098 3.902 12 C 0.167 3.833 13 C -0.122 4.122 14 C 0.233 3.767 15 H 0.116 0.884 16 N -0.708 5.708 17 C 0.545 3.455 18 O -0.507 6.507 19 C -0.194 4.194 20 H 0.150 0.850 21 C -0.146 4.146 22 C 0.229 3.771 23 F -0.158 7.158 24 F -0.138 7.138 25 C 0.153 3.847 26 N -0.466 5.466 27 C -0.046 4.046 28 C 0.004 3.996 29 N -0.428 5.428 30 H 0.256 0.744 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.407 0.593 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.169 0.831 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.019 -9.226 0.007 12.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.198 4.198 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.357 4.357 8 H 0.100 0.900 9 N -0.331 5.331 10 C -0.006 4.006 11 C 0.012 3.988 12 C 0.041 3.959 13 C -0.162 4.162 14 C 0.126 3.874 15 H 0.134 0.866 16 N -0.361 5.361 17 C 0.329 3.671 18 O -0.381 6.381 19 C -0.217 4.217 20 H 0.168 0.832 21 C -0.184 4.184 22 C 0.191 3.809 23 F -0.138 7.138 24 F -0.118 7.118 25 C -0.110 4.110 26 N -0.185 5.185 27 C -0.195 4.195 28 C -0.131 4.131 29 N -0.109 5.109 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.243 0.757 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.186 0.814 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.256 -9.976 0.881 12.979 hybrid contribution 0.958 2.034 -0.847 2.403 sum -7.298 -7.942 0.034 10.786 Atomic orbital electron populations 1.69776 1.05109 1.25665 1.56006 1.24776 0.95687 0.97659 1.01683 0.86030 0.78810 0.83365 0.77435 1.20349 1.21534 1.21504 1.19029 0.90338 0.81537 1.44839 0.89955 1.45971 1.01586 0.99183 1.86343 1.22760 0.93118 0.87094 0.97586 1.22980 1.00754 0.97673 0.77405 1.22543 0.89271 0.86867 0.97194 1.22860 0.98230 0.97691 0.97377 1.19688 0.80803 0.98627 0.88294 0.86624 1.45849 1.05867 1.33210 1.51162 1.19182 0.84306 0.83836 0.79733 1.90828 1.85607 1.25344 1.36298 1.23634 0.92397 1.03815 1.01809 0.83191 1.24299 1.00566 0.94698 0.98840 1.19478 0.81216 0.86223 0.93973 1.93046 1.43408 1.96840 1.80543 1.93134 1.93129 1.52322 1.73195 1.24378 0.96504 0.98005 0.92155 1.69784 1.20811 1.21620 1.06305 1.22192 0.98976 0.99645 0.98646 1.22435 1.03547 1.03371 0.83708 1.45783 1.29046 1.30209 1.05860 0.93429 0.92953 0.92676 0.93561 0.90062 0.87947 0.87394 0.75741 0.85179 0.84801 0.81364 0.81330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.05 11.39 55.49 0.63 -24.42 16 2 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 3 Si 0.91 20.84 29.55 -169.99 -5.02 15.81 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -5.91 10.70 -15.06 -0.16 -6.07 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -13.67 3.70 -182.59 -0.68 -14.34 16 10 C 0.12 2.14 8.44 -3.33 -0.03 2.11 16 11 C 0.10 1.58 1.55 -136.70 -0.21 1.37 16 12 C 0.17 3.33 6.97 -3.34 -0.02 3.31 16 13 C -0.12 -1.42 6.12 -25.56 -0.16 -1.58 16 14 C 0.23 3.18 3.29 -67.70 -0.22 2.95 16 15 H 0.12 1.59 7.55 -51.93 -0.39 1.20 16 16 N -0.71 -8.68 5.10 -53.59 -0.27 -8.95 16 17 C 0.55 7.28 7.61 -10.99 -0.08 7.20 16 18 O -0.51 -8.78 14.79 5.55 0.08 -8.70 16 19 C -0.19 -1.95 6.17 -91.77 -0.57 -2.52 16 20 H 0.15 1.03 8.14 -51.93 -0.42 0.61 16 21 C -0.15 -1.33 10.21 -26.73 -0.27 -1.60 16 22 C 0.23 2.58 5.19 -26.73 -0.14 2.44 16 23 F -0.16 -1.75 17.60 2.25 0.04 -1.71 16 24 F -0.14 -2.00 15.71 2.25 0.04 -1.96 16 25 C 0.15 2.67 8.23 -154.60 -1.27 1.40 16 26 N -0.47 -9.01 11.25 -10.50 -0.12 -9.13 16 27 C -0.05 -0.81 11.86 -17.93 -0.21 -1.02 16 28 C 0.00 0.07 12.03 -16.43 -0.20 -0.12 16 29 N -0.43 -7.60 3.37 -103.49 -0.35 -7.95 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 33 H 0.05 0.88 7.95 -51.93 -0.41 0.47 16 34 H 0.08 1.90 7.19 -51.93 -0.37 1.52 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.11 1.01 7.76 -51.93 -0.40 0.61 16 37 H 0.41 4.27 8.63 -40.82 -0.35 3.91 16 38 H 0.13 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.17 2.45 8.06 -52.48 -0.42 2.03 16 41 H 0.17 3.02 8.06 -52.49 -0.42 2.60 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -33.82 357.86 -8.76 -42.58 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -4.86 Total: 5.62 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -3.64 Total: 7.75 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.78 Total: -64.79 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.08 Total: -3.67 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.82 -8.76 -42.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092369251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.904 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds