Wall clock time and date at job start Tue Mar 31 2020 20:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00356 * 2 1 4 4 H 1.48498 * 109.47492 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46891 * 300.00001 * 3 2 1 6 6 H 1.48499 * 109.47156 * 59.99854 * 3 2 1 7 7 C 1.38820 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99795 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99606 * 359.97438 * 7 2 1 10 10 C 1.47762 * 134.40588 * 179.97438 * 9 7 2 11 11 C 1.53051 * 85.82136 * 156.05148 * 10 9 7 12 12 C 1.47754 * 134.41895 * 0.02933 * 9 7 2 13 13 C 1.53509 * 115.27900 * 139.92033 * 11 10 9 14 14 C 1.54726 * 101.52071 * 154.98428 * 13 11 10 15 15 H 1.08991 * 110.46542 * 216.91785 * 14 13 11 16 16 N 1.46511 * 110.46087 * 94.46292 * 14 13 11 17 17 C 1.34770 * 119.99717 * 154.99834 * 16 14 13 18 18 O 1.21288 * 120.00091 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99999 * 179.97438 * 17 16 14 20 20 H 1.09002 * 115.54929 * 34.41763 * 19 17 16 21 21 C 1.52999 * 117.51845 * 248.71846 * 19 17 16 22 22 C 1.53005 * 117.49884 * 180.08744 * 19 17 16 23 23 F 1.39901 * 117.49767 * 214.99865 * 22 19 17 24 24 F 1.39896 * 117.49894 * 0.02562 * 22 19 17 25 25 C 1.51646 * 104.31389 * 335.75850 * 14 13 11 26 26 N 1.30858 * 141.39545 * 196.29685 * 25 14 13 27 27 C 1.33978 * 109.34968 * 180.18094 * 26 25 14 28 28 C 1.34520 * 108.05080 * 359.90758 * 27 26 25 29 29 N 1.35094 * 109.99678 * 16.26706 * 25 14 13 30 30 H 0.97002 * 119.99645 * 359.97438 * 1 2 3 31 31 H 1.08997 * 113.81793 * 41.82968 * 10 9 7 32 32 H 1.08998 * 113.92556 * 270.28619 * 10 9 7 33 33 H 1.09004 * 113.81706 * 89.72800 * 12 9 7 34 34 H 1.09001 * 113.81717 * 318.18494 * 12 9 7 35 35 H 1.09000 * 111.01274 * 36.92969 * 13 11 10 36 36 H 1.08994 * 111.04810 * 273.06171 * 13 11 10 37 37 H 0.96997 * 119.99554 * 334.99845 * 16 14 13 38 38 H 1.09003 * 117.50034 * 0.02562 * 21 19 17 39 39 H 1.08995 * 117.49797 * 145.02631 * 21 19 17 40 40 H 1.08007 * 125.97689 * 179.88512 * 27 26 25 41 41 H 1.07990 * 126.54637 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 1.7225 -3.8113 0.0019 11 6 0.3493 -4.0785 0.6227 12 6 -0.1056 -2.7558 0.0019 13 6 -0.3724 -5.3301 0.1038 14 6 -1.2996 -5.6685 1.2954 15 1 -1.3806 -6.7482 1.4206 16 7 -2.6249 -5.0761 1.0975 17 6 -3.7023 -5.6196 1.6975 18 8 -3.5747 -6.5988 2.4018 19 6 -5.0654 -5.0099 1.4944 20 1 -5.2461 -4.5802 0.5092 21 6 -5.7187 -4.3231 2.6954 22 6 -6.2482 -5.6719 2.2042 23 9 -7.4790 -5.6791 1.5390 24 9 -5.9815 -6.7964 2.9925 25 6 -0.6129 -5.0430 2.4942 26 7 -0.6091 -5.0750 3.8023 27 6 0.3021 -4.2086 4.2649 28 6 0.8886 -3.6169 3.2087 29 7 0.3107 -4.1473 2.0822 30 1 -0.4850 0.8401 0.0004 31 1 2.5570 -4.0354 0.6664 32 1 1.8453 -4.2362 -0.9943 33 1 -0.5330 -2.8617 -0.9953 34 1 -0.7169 -2.1450 0.6661 35 1 0.3338 -6.1389 -0.0838 36 1 -0.9523 -5.1048 -0.7911 37 1 -2.7267 -4.2928 0.5346 38 1 -5.1623 -4.3116 3.6327 39 1 -6.3291 -3.4414 2.5003 40 1 0.5264 -4.0182 5.3042 41 1 1.6665 -2.8686 3.2409 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092369251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:29 Heat of formation + Delta-G solvation = 23.188337 kcal Electronic energy + Delta-G solvation = -29805.482716 eV Core-core repulsion = 25360.376504 eV Total energy + Delta-G solvation = -4445.106212 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.68960 -48.36222 -43.61189 -40.87369 -39.96738 -37.17694 -36.42776 -34.78406 -33.46904 -31.93925 -29.83859 -28.93293 -26.93778 -26.63253 -25.06754 -23.56643 -23.14091 -22.85181 -21.59227 -21.25531 -20.13920 -19.36831 -18.83354 -18.24500 -17.70392 -17.35516 -17.02509 -16.69170 -16.53635 -16.23823 -15.85332 -15.59295 -15.49135 -15.17613 -15.01225 -14.95689 -14.77733 -14.60666 -14.52697 -14.28132 -13.79699 -13.66523 -13.49944 -13.26139 -13.18738 -13.08792 -12.86100 -12.32102 -12.27471 -11.93780 -11.71591 -11.52742 -11.26206 -11.04864 -10.97811 -10.86526 -10.46911 -10.35778 -9.37148 -8.99919 -7.96915 -5.28730 0.98452 1.19145 1.42934 1.45129 1.53138 1.67542 1.85830 2.01302 2.20590 2.40023 2.41787 2.82811 3.11929 3.22000 3.28792 3.33162 3.40145 3.52940 3.55184 3.71337 3.85327 4.09654 4.27033 4.39887 4.49470 4.57913 4.59141 4.62940 4.69135 4.73825 4.75168 4.82227 4.86300 5.10378 5.21531 5.28267 5.41177 5.50596 5.85287 5.90338 6.20093 6.36033 6.86600 7.08095 7.17548 7.54851 8.43922 9.19472 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.003345 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.742483 B = 8367.518570 C = 9171.433028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.054 4.054 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.296 1.296 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.636 5.636 10 C 0.123 3.877 11 C 0.112 3.888 12 C 0.170 3.830 13 C -0.104 4.104 14 C 0.233 3.767 15 H 0.119 0.881 16 N -0.698 5.698 17 C 0.541 3.459 18 O -0.551 6.551 19 C -0.187 4.187 20 H 0.189 0.811 21 C -0.129 4.129 22 C 0.207 3.793 23 F -0.157 7.157 24 F -0.163 7.163 25 C 0.154 3.846 26 N -0.503 5.503 27 C -0.044 4.044 28 C -0.020 4.020 29 N -0.436 5.436 30 H 0.249 0.751 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.418 0.582 38 H 0.118 0.882 39 H 0.169 0.831 40 H 0.191 0.809 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.173 -9.707 -1.587 12.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.224 1.224 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.363 5.363 10 C -0.002 4.002 11 C 0.027 3.973 12 C 0.045 3.955 13 C -0.142 4.142 14 C 0.125 3.875 15 H 0.137 0.863 16 N -0.351 5.351 17 C 0.328 3.672 18 O -0.428 6.428 19 C -0.208 4.208 20 H 0.206 0.794 21 C -0.167 4.167 22 C 0.170 3.830 23 F -0.138 7.138 24 F -0.144 7.144 25 C -0.110 4.110 26 N -0.223 5.223 27 C -0.192 4.192 28 C -0.155 4.155 29 N -0.117 5.117 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.255 0.745 38 H 0.136 0.864 39 H 0.186 0.814 40 H 0.207 0.793 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.386 -10.464 -0.734 13.430 hybrid contribution 1.041 2.137 -0.304 2.396 sum -7.344 -8.327 -1.038 11.152 Atomic orbital electron populations 1.69920 1.06075 1.25547 1.57863 1.25418 0.96431 1.00234 1.02718 0.85162 0.78279 0.80143 0.76642 1.19347 1.21802 1.22375 1.19288 0.90617 0.83132 1.43015 0.90254 1.46255 1.03182 1.00264 1.86610 1.22973 0.93722 0.84329 0.99177 1.22837 0.99903 0.98066 0.76533 1.22465 0.87610 0.88138 0.97326 1.23002 0.98061 0.95929 0.97251 1.19852 0.81483 0.98590 0.87555 0.86337 1.45793 1.05226 1.33310 1.50771 1.19720 0.85557 0.83230 0.78739 1.90815 1.86392 1.27411 1.38191 1.23747 0.89823 1.03258 1.04014 0.79427 1.24439 0.99711 0.94583 0.97922 1.19776 0.81772 0.86440 0.95013 1.93042 1.43354 1.96826 1.80536 1.93075 1.93363 1.53887 1.74046 1.25140 0.96046 0.97369 0.92452 1.69801 1.21949 1.22860 1.07671 1.22583 0.98153 0.98832 0.99663 1.22508 1.04307 1.04103 0.84544 1.45968 1.29131 1.30207 1.06391 0.94209 0.93424 0.89247 0.92053 0.94044 0.84830 0.84156 0.74480 0.86407 0.81355 0.79255 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.08 11.39 21.65 0.25 -51.83 16 2 C -0.05 -2.84 5.50 84.86 0.47 -2.38 16 3 Si 0.97 43.11 29.55 68.60 2.03 45.14 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.30 -13.44 7.11 99.48 0.71 -12.74 16 7 C -0.23 -11.87 10.70 84.04 0.90 -10.97 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.64 -28.16 3.70 -731.58 -2.71 -30.87 16 10 C 0.12 4.05 8.44 86.15 0.73 4.77 16 11 C 0.11 3.38 1.55 5.61 0.01 3.39 16 12 C 0.17 6.55 6.97 86.15 0.60 7.16 16 13 C -0.10 -1.99 6.12 31.35 0.19 -1.80 16 14 C 0.23 5.80 3.29 45.13 0.15 5.94 16 15 H 0.12 2.98 7.55 -2.39 -0.02 2.97 16 16 N -0.70 -15.52 5.10 -441.84 -2.25 -17.77 16 17 C 0.54 13.65 7.61 87.66 0.67 14.32 16 18 O -0.55 -18.91 14.79 -3.06 -0.05 -18.95 16 19 C -0.19 -3.32 6.17 -11.54 -0.07 -3.39 16 20 H 0.19 1.84 8.14 -2.39 -0.02 1.82 16 21 C -0.13 -2.08 10.21 30.60 0.31 -1.77 16 22 C 0.21 4.44 5.19 30.60 0.16 4.60 16 23 F -0.16 -3.24 17.60 44.97 0.79 -2.44 16 24 F -0.16 -4.80 15.71 44.97 0.71 -4.09 16 25 C 0.15 5.21 8.23 138.31 1.14 6.35 16 26 N -0.50 -19.34 11.25 -187.12 -2.11 -21.45 16 27 C -0.04 -1.57 11.86 83.51 0.99 -0.58 16 28 C -0.02 -0.75 12.03 82.99 1.00 0.25 16 29 N -0.44 -15.09 3.37 -481.33 -1.62 -16.71 16 30 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 2.41 8.13 -2.39 -0.02 2.39 16 33 H 0.06 2.18 7.95 -2.39 -0.02 2.16 16 34 H 0.04 1.94 7.19 -2.39 -0.02 1.92 16 35 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.14 1.88 7.76 -2.39 -0.02 1.86 16 37 H 0.42 7.56 8.63 -92.71 -0.80 6.76 16 38 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.17 1.53 8.14 -2.39 -0.02 1.52 16 40 H 0.19 5.50 8.06 -2.91 -0.02 5.48 16 41 H 0.16 6.02 8.06 -2.92 -0.02 6.00 16 Total: -1.00 -76.11 357.86 2.56 -73.54 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.29 Total: 19.55 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: 7.24 Total: 25.89 kcal Atomic # 7 Polarization: -130.19 SS G_CDS: -8.45 Total: -138.63 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.05 Total: -18.95 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 1.50 Total: -6.54 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -76.11 2.56 -73.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092369251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.733 kcal (2) G-P(sol) polarization free energy of solvation -76.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds