Wall clock time and date at job start Tue Mar 31 2020 20:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00005 * 2 1 4 4 H 1.48496 * 109.47416 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47087 * 119.99928 * 3 2 1 6 6 H 1.48499 * 109.47139 * 239.99970 * 3 2 1 7 7 C 1.38808 * 119.99623 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99786 * 211.12494 * 7 2 1 9 9 N 1.36938 * 120.00408 * 31.13090 * 7 2 1 10 10 C 1.46733 * 125.24865 * 15.20802 * 9 7 2 11 11 C 1.54269 * 106.43799 * 161.11677 * 10 9 7 12 12 C 1.53866 * 103.65244 * 28.42547 * 11 10 9 13 13 C 1.53000 * 111.73458 * 93.99049 * 12 11 10 14 14 N 1.46500 * 109.46729 * 63.26318 * 13 12 11 15 15 C 1.34778 * 119.99973 * 180.02562 * 14 13 12 16 16 O 1.21741 * 119.99841 * 359.97438 * 15 14 13 17 17 C 1.46345 * 120.00232 * 180.02562 * 15 14 13 18 18 C 1.36732 * 125.43478 * 179.97438 * 17 15 14 19 19 C 1.37347 * 113.33178 * 179.97438 * 18 17 15 20 20 C 1.34205 * 115.04304 * 0.02562 * 19 18 17 21 21 F 1.35098 * 124.54166 * 179.97438 * 20 19 18 22 22 S 1.70620 * 110.91831 * 359.72137 * 20 19 18 23 23 C 1.55088 * 110.14127 * 219.33084 * 12 11 10 24 24 C 1.54270 * 106.60540 * 118.67679 * 23 12 11 25 25 C 1.54685 * 104.11380 * 333.28761 * 24 23 12 26 26 C 1.46888 * 125.24855 * 195.51683 * 9 7 2 27 27 H 1.09005 * 111.84088 * 58.50860 * 26 9 7 28 28 H 0.96999 * 120.00179 * 185.54697 * 1 2 3 29 29 H 1.09002 * 110.04569 * 280.51403 * 10 9 7 30 30 H 1.09004 * 110.04211 * 41.96905 * 10 9 7 31 31 H 1.09004 * 110.79870 * 269.80006 * 11 10 9 32 32 H 1.09004 * 110.42948 * 146.87549 * 11 10 9 33 33 H 1.08997 * 109.47106 * 183.25764 * 13 12 11 34 34 H 1.08994 * 109.47546 * 303.26557 * 13 12 11 35 35 H 0.96997 * 120.00519 * 0.02562 * 14 13 12 36 36 H 1.08000 * 123.34007 * 359.97438 * 18 17 15 37 37 H 1.07996 * 122.47725 * 179.97438 * 19 18 17 38 38 H 1.08998 * 110.55278 * 359.06489 * 23 12 11 39 39 H 1.09010 * 109.47241 * 237.68746 * 23 12 11 40 40 H 1.09004 * 110.49878 * 214.63529 * 24 23 12 41 41 H 1.08996 * 110.50762 * 91.94947 * 24 23 12 42 42 H 1.08993 * 110.61554 * 278.83679 * 25 24 23 43 43 H 1.08998 * 110.74595 * 155.90778 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6964 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9736 -1.2693 0.4841 9 7 1.4734 -2.3030 -0.6121 10 6 0.3529 -2.2829 -1.5592 11 6 0.4109 -3.6166 -2.3324 12 6 1.0669 -4.5867 -1.3343 13 6 0.0229 -5.3641 -0.5303 14 7 -0.7669 -6.2016 -1.4364 15 6 -1.7529 -6.9796 -0.9475 16 8 -1.9869 -6.9868 0.2472 17 6 -2.5415 -7.8167 -1.8526 18 6 -3.5628 -8.6452 -1.4783 19 6 -4.1332 -9.3159 -2.5324 20 6 -3.5975 -9.0476 -3.7333 21 9 -4.0091 -9.5986 -4.8961 22 16 -2.3316 -7.9120 -3.5956 23 6 2.0542 -5.5269 -2.0737 24 6 3.4498 -5.2616 -1.4723 25 6 3.3710 -3.8022 -0.9657 26 6 1.9263 -3.6867 -0.4175 27 1 1.8625 -3.9911 0.6273 28 1 -0.4850 -0.8361 0.0812 29 1 -0.5908 -2.2013 -1.0199 30 1 0.4625 -1.4467 -2.2499 31 1 1.0228 -3.5179 -3.2291 32 1 -0.5941 -3.9521 -2.5884 33 1 0.5250 -5.9954 0.2028 34 1 -0.6355 -4.6637 -0.0165 35 1 -0.5803 -6.1963 -2.3883 36 1 -3.8888 -8.7607 -0.4552 37 1 -4.9517 -10.0087 -2.4043 38 1 2.0603 -5.3114 -3.1422 39 1 1.7648 -6.5640 -1.9036 40 1 4.2200 -5.3590 -2.2375 41 1 3.6446 -5.9431 -0.6443 42 1 3.5270 -3.1021 -1.7864 43 1 4.0976 -3.6293 -0.1719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094588428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:20 Heat of formation + Delta-G solvation = -26.586644 kcal Electronic energy + Delta-G solvation = -27099.498080 eV Core-core repulsion = 23186.153888 eV Total energy + Delta-G solvation = -3913.344192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -49.51729 -40.26851 -39.23317 -37.69688 -34.98492 -34.22406 -31.97615 -30.63485 -29.76416 -27.97729 -26.56468 -25.54715 -24.27603 -23.83464 -21.90395 -20.27389 -20.24241 -20.00185 -19.40512 -18.27847 -17.54496 -17.01815 -16.72683 -16.42375 -15.53807 -15.44815 -15.08654 -14.89343 -14.83998 -14.22395 -13.85319 -13.61862 -13.45646 -13.35839 -13.30137 -13.05613 -12.57194 -12.48173 -12.21720 -11.64852 -11.50121 -11.46760 -11.25051 -10.76885 -10.65094 -10.50807 -10.39882 -10.33625 -10.10028 -10.05820 -9.95397 -9.82813 -9.54874 -9.28224 -9.19266 -8.99039 -8.33129 -6.91856 -6.08100 -3.10078 -0.07531 0.54549 1.17363 1.83143 2.96188 2.99561 3.51344 3.55336 3.73069 3.85610 4.50315 4.58566 4.78214 4.80688 4.82486 4.86128 4.87077 5.30993 5.36047 5.37830 5.44890 5.57289 5.58543 5.65946 5.71851 5.75180 5.84969 5.89291 5.99078 6.03477 6.13503 6.19663 6.23631 6.31517 6.43120 6.44590 6.60897 6.74262 6.91101 7.04772 7.11081 7.30980 7.85865 7.99513 8.52521 9.05480 9.85101 10.39204 11.23338 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018585 B = 0.002760 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.266018 B =10141.502308 C =10579.302301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.024 4.024 3 Si 1.059 2.941 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.337 4.337 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.147 3.853 11 C -0.124 4.124 12 C -0.084 4.084 13 C 0.143 3.857 14 N -0.717 5.717 15 C 0.588 3.412 16 O -0.523 6.523 17 C -0.255 4.255 18 C -0.038 4.038 19 C -0.180 4.180 20 C -0.024 4.024 21 F -0.099 7.099 22 S 0.225 5.775 23 C -0.111 4.111 24 C -0.123 4.123 25 C -0.128 4.128 26 C 0.172 3.828 27 H 0.047 0.953 28 H 0.269 0.731 29 H 0.025 0.975 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.397 0.603 36 H 0.165 0.835 37 H 0.159 0.841 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.553 -19.495 -9.210 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.226 4.226 3 Si 0.889 3.111 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.465 4.465 8 H 0.083 0.917 9 N -0.317 5.317 10 C 0.021 3.979 11 C -0.162 4.162 12 C -0.085 4.085 13 C 0.020 3.980 14 N -0.368 5.368 15 C 0.373 3.627 16 O -0.401 6.401 17 C -0.376 4.376 18 C -0.070 4.070 19 C -0.213 4.213 20 C -0.162 4.162 21 F -0.078 7.078 22 S 0.490 5.510 23 C -0.149 4.149 24 C -0.161 4.161 25 C -0.168 4.168 26 C 0.064 3.936 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.231 0.769 36 H 0.183 0.817 37 H 0.176 0.824 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.895 -17.054 -9.450 19.711 hybrid contribution -0.895 -2.542 0.326 2.715 sum -3.790 -19.597 -9.124 21.946 Atomic orbital electron populations 1.70797 1.06777 1.30165 1.47510 1.25652 0.96275 1.00968 0.99750 0.83605 0.74967 0.76409 0.76140 1.21218 1.22077 1.22238 1.19665 1.01680 0.88699 1.36413 0.91698 1.44417 1.38288 1.00804 1.48208 1.21240 0.91695 0.93721 0.91254 1.22605 0.99292 0.96703 0.97627 1.22188 0.94726 0.95102 0.96452 1.21393 0.92500 0.92668 0.91448 1.45943 1.34919 1.44433 1.11517 1.16760 0.79671 0.79252 0.87016 1.90880 1.68264 1.66216 1.14750 1.24618 1.07106 1.09659 0.96169 1.20511 0.92671 0.92798 1.01013 1.20311 1.04972 1.05662 0.90378 1.21955 1.04304 1.04414 0.85514 1.91543 1.88817 1.83270 1.44180 1.83472 1.29404 1.36307 1.01865 1.22449 0.94966 0.98150 0.99303 1.22298 0.96022 0.98051 0.99682 1.22936 0.98668 0.94529 1.00627 1.21532 0.91359 0.85432 0.95275 0.93581 0.91966 0.95711 0.93783 0.91438 0.92149 0.91004 0.90427 0.76897 0.81719 0.82363 0.91566 0.92359 0.92305 0.92225 0.91061 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.32 12.97 55.49 0.72 -26.60 16 2 C -0.02 -0.68 5.06 -17.43 -0.09 -0.77 16 3 Si 1.06 25.24 30.02 -169.99 -5.10 20.13 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.34 -9.24 9.65 -15.06 -0.15 -9.38 16 8 H 0.07 1.79 8.00 -52.48 -0.42 1.37 16 9 N -0.59 -14.25 2.91 -162.30 -0.47 -14.73 16 10 C 0.15 3.28 5.44 -3.25 -0.02 3.26 16 11 C -0.12 -2.04 5.86 -25.62 -0.15 -2.19 16 12 C -0.08 -1.29 0.55 -152.12 -0.08 -1.37 16 13 C 0.14 2.16 4.50 -4.04 -0.02 2.14 16 14 N -0.72 -9.04 4.68 -61.72 -0.29 -9.33 16 15 C 0.59 8.02 7.77 -13.00 -0.10 7.91 16 16 O -0.52 -9.03 16.84 5.15 0.09 -8.95 16 17 C -0.25 -2.72 6.44 -36.87 -0.24 -2.96 16 18 C -0.04 -0.35 10.00 -40.45 -0.40 -0.76 16 19 C -0.18 -1.46 10.16 -41.33 -0.42 -1.88 16 20 C -0.02 -0.21 8.10 29.31 0.24 0.03 16 21 F -0.10 -0.92 17.32 2.25 0.04 -0.88 16 22 S 0.23 1.87 22.15 -107.50 -2.38 -0.51 16 23 C -0.11 -1.39 5.70 -24.96 -0.14 -1.53 16 24 C -0.12 -1.63 6.85 -25.18 -0.17 -1.81 16 25 C -0.13 -2.22 6.21 -24.81 -0.15 -2.37 16 26 C 0.17 3.34 3.55 -65.86 -0.23 3.11 16 27 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 28 H 0.27 8.10 6.09 -40.82 -0.25 7.85 16 29 H 0.03 0.62 6.52 -51.93 -0.34 0.28 16 30 H 0.04 1.09 8.08 -51.93 -0.42 0.67 16 31 H 0.07 1.05 7.41 -51.93 -0.38 0.66 16 32 H 0.06 0.88 7.24 -51.93 -0.38 0.50 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.40 4.13 6.82 -40.82 -0.28 3.85 16 36 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.07 0.77 7.32 -51.93 -0.38 0.39 16 39 H 0.06 0.65 7.53 -51.92 -0.39 0.26 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.36 8.06 -51.93 -0.42 0.94 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -31.73 361.85 -9.90 -41.63 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.82 Total: 2.34 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.13 Total: -8.58 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.04 Total: -50.66 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.04 Total: -0.88 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.10 Total: 20.13 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.38 Total: -0.51 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.73 -9.90 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094588428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.045 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds