Wall clock time and date at job start Tue Mar 31 2020 20:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86810 * 119.99716 * 2 1 4 4 H 1.48495 * 109.47166 * 269.99897 * 3 2 1 5 5 H 1.48499 * 109.46801 * 29.99938 * 3 2 1 6 6 H 1.48502 * 109.47184 * 149.99565 * 3 2 1 7 7 C 1.38811 * 120.00564 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00311 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99963 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.32193 * 35.35635 * 10 9 7 12 12 C 1.53031 * 109.32403 * 155.00010 * 10 9 7 13 13 C 1.53973 * 108.82675 * 175.50096 * 12 10 9 14 14 H 1.08998 * 112.99214 * 168.09350 * 13 12 10 15 15 C 1.55428 * 106.41459 * 293.82395 * 13 12 10 16 16 C 1.55450 * 100.23315 * 73.19562 * 15 13 12 17 17 H 1.09000 * 113.04148 * 163.20416 * 16 15 13 18 18 C 1.52984 * 109.18089 * 275.80458 * 10 9 7 19 19 N 1.47793 * 104.11759 * 40.86405 * 16 15 13 20 20 C 1.34770 * 125.85426 * 153.44038 * 19 16 15 21 21 O 1.21286 * 120.00144 * 359.71563 * 20 19 16 22 22 C 1.50703 * 120.00129 * 179.71773 * 20 19 16 23 23 N 1.46498 * 109.47475 * 179.97438 * 22 20 19 24 24 C 1.35044 * 126.03880 * 124.99726 * 23 22 20 25 25 C 1.35369 * 107.73108 * 179.97438 * 24 23 22 26 26 Cl 1.73606 * 126.04568 * 179.97438 * 25 24 23 27 27 C 1.39932 * 107.90776 * 0.02562 * 25 24 23 28 28 N 1.30854 * 108.21040 * 359.97438 * 27 25 24 29 29 C 1.47082 * 108.28604 * 333.17979 * 19 16 15 30 30 H 0.96993 * 120.00549 * 359.97438 * 1 2 3 31 31 H 0.96995 * 119.99946 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.57418 * 55.70208 * 12 10 9 33 33 H 1.09002 * 109.68406 * 295.37102 * 12 10 9 34 34 H 1.09000 * 111.22863 * 191.15355 * 15 13 12 35 35 H 1.08996 * 111.23526 * 315.59582 * 15 13 12 36 36 H 1.08995 * 109.53570 * 304.61097 * 18 10 9 37 37 H 1.08993 * 109.53449 * 64.77356 * 18 10 9 38 38 H 1.09003 * 109.46673 * 59.99903 * 22 20 19 39 39 H 1.09000 * 109.47267 * 300.00531 * 22 20 19 40 40 H 1.08005 * 126.13219 * 0.02562 * 24 23 22 41 41 H 1.07997 * 125.89390 * 180.26353 * 27 25 24 42 42 H 1.09010 * 109.97494 * 120.72125 * 29 19 16 43 43 H 1.08994 * 109.97421 * 241.95985 * 29 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9651 -3.5496 0.5958 12 6 1.1781 -4.7497 0.6108 13 6 1.9134 -6.0982 0.5022 14 1 1.4476 -6.8860 1.0942 15 6 2.0112 -6.4242 -1.0143 16 6 3.0986 -5.4011 -1.4471 17 1 3.5436 -5.6349 -2.4143 18 6 2.4362 -4.0189 -1.4370 19 7 4.0859 -5.4377 -0.3479 20 6 5.3969 -5.1438 -0.4543 21 8 5.8605 -4.8188 -1.5269 22 6 6.2868 -5.2189 0.7596 23 7 7.6558 -4.8562 0.3847 24 6 8.4065 -3.8900 0.9561 25 6 9.6044 -3.8719 0.3260 26 17 10.9303 -2.8094 0.6824 27 6 9.5847 -4.8604 -0.6643 28 7 8.4174 -5.4507 -0.6295 29 6 3.3910 -5.8439 0.8831 30 1 -0.4850 0.8399 0.0004 31 1 0.3558 -2.3881 -0.0002 32 1 0.2342 -4.8037 0.0685 33 1 0.9846 -4.5226 1.6592 34 1 2.3418 -7.4500 -1.1770 35 1 1.0659 -6.2312 -1.5214 36 1 1.5391 -4.0389 -2.0557 37 1 3.1326 -3.2776 -1.8285 38 1 6.2758 -6.2343 1.1558 39 1 5.9229 -4.5282 1.5203 40 1 8.1054 -3.2474 1.7703 41 1 10.3948 -5.0983 -1.3377 42 1 3.8363 -6.7571 1.2780 43 1 3.4533 -5.0483 1.6256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095007828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:11 Heat of formation + Delta-G solvation = 68.957905 kcal Electronic energy + Delta-G solvation = -27486.122859 eV Core-core repulsion = 23594.798045 eV Total energy + Delta-G solvation = -3891.324814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.51694 -40.85580 -38.35180 -36.53119 -34.87534 -33.57158 -32.68342 -31.32761 -30.80973 -30.14133 -28.05071 -27.47866 -25.65875 -23.73233 -22.58445 -21.38222 -21.20971 -21.13156 -19.52305 -18.85807 -17.56201 -17.47551 -17.17272 -16.18103 -15.66132 -15.20420 -14.76059 -14.59691 -14.38875 -14.25692 -13.94609 -13.53446 -13.47054 -13.22348 -13.01372 -12.82993 -12.60091 -12.32573 -12.30631 -11.84679 -11.83412 -11.73195 -11.52565 -11.11142 -11.03686 -10.87223 -10.63201 -10.54953 -10.23816 -10.17325 -10.09977 -9.73575 -9.63083 -9.52615 -8.94904 -8.57846 -8.56213 -7.00891 -5.81558 -3.10434 1.50279 1.75933 2.47918 2.53940 2.59217 2.93345 3.40728 3.47005 3.47164 4.14187 4.38220 4.42926 4.53169 4.54112 4.70417 4.71106 4.78777 4.88118 5.17946 5.27059 5.28899 5.37944 5.42056 5.43544 5.49700 5.65963 5.70561 5.80619 5.85874 5.91786 6.03167 6.14237 6.19158 6.21971 6.40417 6.44313 6.54268 6.61546 6.89986 7.00668 7.38555 7.49874 7.65608 8.11246 8.37181 9.48650 10.05318 10.39787 11.40930 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.008998 B = 0.003765 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.987456 B = 7434.541027 C = 9931.970308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.903 3.097 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.067 0.933 9 N -0.724 5.724 10 C 0.181 3.819 11 H 0.045 0.955 12 C -0.123 4.123 13 C -0.096 4.096 14 H 0.100 0.900 15 C -0.126 4.126 16 C 0.138 3.862 17 H 0.092 0.908 18 C -0.146 4.146 19 N -0.606 5.606 20 C 0.517 3.483 21 O -0.512 6.512 22 C 0.120 3.880 23 N -0.352 5.352 24 C 0.076 3.924 25 C -0.186 4.186 26 Cl -0.046 7.046 27 C 0.058 3.942 28 N -0.252 5.252 29 C 0.097 3.903 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.129 0.871 40 H 0.185 0.815 41 H 0.190 0.810 42 H 0.064 0.936 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.944 -16.187 4.951 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.734 3.266 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.085 0.915 9 N -0.365 5.365 10 C 0.071 3.929 11 H 0.063 0.937 12 C -0.161 4.161 13 C -0.115 4.115 14 H 0.118 0.882 15 C -0.164 4.164 16 C 0.035 3.965 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.341 5.341 20 C 0.302 3.698 21 O -0.386 6.386 22 C -0.005 4.005 23 N -0.134 5.134 24 C -0.071 4.071 25 C -0.224 4.224 26 Cl -0.018 7.018 27 C -0.130 4.130 28 N -0.072 5.072 29 C -0.025 4.025 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.146 0.854 40 H 0.202 0.798 41 H 0.207 0.793 42 H 0.083 0.917 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.619 -16.661 3.950 20.693 hybrid contribution 0.695 1.890 0.380 2.049 sum 12.315 -14.771 4.330 19.712 Atomic orbital electron populations 1.69647 1.05070 1.25689 1.57657 1.24707 0.95470 0.97606 1.02889 0.86249 0.78673 0.83982 0.77658 1.21661 1.21694 1.20805 1.19178 0.90816 0.84153 1.42800 0.91536 1.42433 1.05713 0.99759 1.88570 1.20227 0.94082 0.86071 0.92502 0.93682 1.22150 0.99182 0.93153 1.01648 1.22599 0.93855 0.98663 0.96413 0.88200 1.23074 0.99250 0.98296 0.95746 1.22291 0.87098 0.96798 0.90357 0.89028 1.22734 1.00200 0.94287 1.01458 1.48543 1.06722 1.67388 1.11462 1.19915 0.81301 0.78380 0.90183 1.90802 1.73251 1.46043 1.28502 1.21566 0.77269 1.04747 0.96881 1.47827 1.11491 1.27377 1.26733 1.22256 0.91018 0.93872 0.99975 1.20710 0.92651 1.03449 1.05611 1.98322 1.44885 1.64067 1.94513 1.23897 0.96177 0.94617 0.98271 1.77607 1.02847 1.20706 1.06051 1.22311 0.93317 0.99588 0.87332 0.93490 0.78317 0.91495 0.91514 0.91264 0.89426 0.91387 0.91916 0.86583 0.85355 0.79846 0.79284 0.91733 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.90 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.52 9.91 -15.06 -0.15 -6.67 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.38 5.11 -53.42 -0.27 -17.65 16 10 C 0.18 3.29 2.39 -67.92 -0.16 3.13 16 11 H 0.05 0.85 5.90 -51.93 -0.31 0.55 16 12 C -0.12 -1.70 4.96 -26.21 -0.13 -1.83 16 13 C -0.10 -0.96 4.33 -87.93 -0.38 -1.34 16 14 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 15 C -0.13 -1.33 6.20 -24.14 -0.15 -1.48 16 16 C 0.14 1.92 3.95 -65.78 -0.26 1.66 16 17 H 0.09 1.37 8.01 -51.93 -0.42 0.95 16 18 C -0.15 -2.56 5.26 -26.60 -0.14 -2.70 16 19 N -0.61 -7.83 2.37 -162.00 -0.38 -8.22 16 20 C 0.52 7.50 7.89 -10.99 -0.09 7.41 16 21 O -0.51 -9.86 15.96 5.55 0.09 -9.78 16 22 C 0.12 1.24 6.20 -5.19 -0.03 1.21 16 23 N -0.35 -4.46 3.40 -62.50 -0.21 -4.67 16 24 C 0.08 0.85 11.43 -17.16 -0.20 0.66 16 25 C -0.19 -2.18 6.65 -39.97 -0.27 -2.45 16 26 Cl -0.05 -0.49 29.30 -51.86 -1.52 -2.01 16 27 C 0.06 0.71 12.02 -17.33 -0.21 0.51 16 28 N -0.25 -3.65 11.64 30.64 0.36 -3.30 16 29 C 0.10 0.95 5.23 -2.83 -0.01 0.93 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.38 9.77 7.79 -40.82 -0.32 9.46 16 32 H 0.07 0.95 7.97 -51.93 -0.41 0.54 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.92 7.75 -51.93 -0.40 0.52 16 36 H 0.07 1.21 8.00 -51.93 -0.42 0.79 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.13 0.98 8.07 -51.93 -0.42 0.56 16 40 H 0.18 1.49 8.06 -52.48 -0.42 1.07 16 41 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.08 0.76 6.77 -51.93 -0.35 0.41 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -35.15 365.00 -8.99 -44.14 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.97 Total: 6.88 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -2.27 Total: -1.36 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.21 Total: -60.84 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.52 Total: -2.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.15 -8.99 -44.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095007828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.098 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds