Wall clock time and date at job start Tue Mar 31 2020 20:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35512 * 117.00327 * 2 1 4 4 C 1.39435 * 120.46774 * 180.02562 * 3 2 1 5 5 C 1.38199 * 118.50709 * 179.72172 * 4 3 2 6 6 N 1.32464 * 119.26854 * 0.25107 * 5 4 3 7 7 C 1.32464 * 120.88703 * 0.02562 * 6 5 4 8 8 N 1.38399 * 119.18779 * 179.97438 * 7 6 5 9 9 C 1.46498 * 120.00043 * 359.97438 * 8 7 6 10 10 H 1.09006 * 112.84965 * 336.20070 * 9 8 7 11 11 C 1.53785 * 113.61427 * 107.50411 * 9 8 7 12 12 C 1.53781 * 87.07844 * 89.11803 * 11 9 8 13 13 H 1.08999 * 113.69085 * 270.87342 * 12 11 9 14 14 N 1.46499 * 113.61337 * 139.98378 * 12 11 9 15 15 C 1.34774 * 120.00221 * 107.50295 * 14 12 11 16 16 O 1.21285 * 120.00072 * 359.97438 * 15 14 12 17 17 C 1.50694 * 120.00266 * 180.02562 * 15 14 12 18 18 S 1.80997 * 109.47334 * 180.02562 * 17 15 14 19 19 C 1.76201 * 100.00215 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00034 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00264 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99949 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00120 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47266 * 89.99888 * 23 21 19 25 25 H 1.48497 * 109.47195 * 210.00209 * 23 21 19 26 26 H 1.48501 * 109.47056 * 330.00157 * 23 21 19 27 27 C 1.53777 * 113.61757 * 205.00311 * 9 8 7 28 28 N 1.32487 * 121.62559 * 359.97438 * 7 6 5 29 29 H 1.08997 * 109.47165 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46633 * 300.00053 * 1 2 3 31 31 H 1.08995 * 109.47077 * 60.00003 * 1 2 3 32 32 H 1.08002 * 120.74971 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.36848 * 180.22982 * 5 4 3 34 34 H 0.97003 * 119.99924 * 179.97438 * 8 7 6 35 35 H 1.08994 * 113.61541 * 203.66818 * 11 9 8 36 36 H 1.09002 * 113.61427 * 334.56896 * 11 9 8 37 37 H 0.97004 * 119.99892 * 287.50259 * 14 12 11 38 38 H 1.09006 * 109.47217 * 299.99831 * 17 15 14 39 39 H 1.08998 * 109.47178 * 59.99331 * 17 15 14 40 40 H 0.96994 * 119.99874 * 179.97438 * 22 21 19 41 41 H 1.08996 * 113.61473 * 25.43396 * 27 9 8 42 42 H 1.08996 * 113.61772 * 156.25314 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4361 1.2917 -0.0005 5 6 4.0211 2.5437 -0.0064 6 7 3.2483 3.6196 -0.0063 7 6 1.9283 3.5087 -0.0001 8 7 1.1546 4.6562 0.0004 9 6 1.7970 5.9728 -0.0053 10 1 2.8103 5.9511 0.3959 11 6 1.6808 6.7092 -1.3504 12 6 0.3603 7.2967 -0.8251 13 1 -0.5113 6.6801 -1.0443 14 7 0.1638 8.7053 -1.1767 15 6 -0.7454 9.0460 -2.1113 16 8 -1.4006 8.1865 -2.6617 17 6 -0.9472 10.4948 -2.4734 18 16 -2.2259 10.6259 -3.7476 19 6 -2.2557 12.3732 -3.9728 20 1 -1.5968 13.0035 -3.3940 21 6 -3.1257 12.9395 -4.8941 22 7 -3.9290 12.1713 -5.5992 23 14 -3.1577 14.7920 -5.1323 24 1 -2.1861 15.1721 -6.1891 25 1 -4.5218 15.2154 -5.5385 26 1 -2.7905 15.4613 -3.8585 27 6 0.9221 7.0879 0.5912 28 7 1.3305 2.3264 0.0057 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 4.0434 0.3985 -0.0014 33 1 5.0964 2.6439 -0.0107 34 1 0.1869 4.5888 0.0045 35 1 2.4589 7.4559 -1.5081 36 1 1.5534 6.0427 -2.2035 37 1 0.6881 9.3927 -0.7367 38 1 -1.2581 11.0506 -1.5887 39 1 -0.0125 10.9082 -2.8522 40 1 -4.5373 12.5672 -6.2428 41 1 0.1821 6.7272 1.3056 42 1 1.4928 7.9376 0.9656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096992889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:30 Heat of formation + Delta-G solvation = 9.330855 kcal Electronic energy + Delta-G solvation = -25181.584954 eV Core-core repulsion = 21289.718223 eV Total energy + Delta-G solvation = -3891.866731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45952 -40.17114 -38.91528 -38.20210 -34.93691 -33.47518 -32.77229 -32.43397 -30.52954 -29.07028 -27.79388 -25.99591 -25.54033 -24.79388 -24.04322 -23.17395 -20.50815 -20.03974 -19.04518 -18.32814 -17.79635 -16.95659 -16.56607 -16.36372 -16.02751 -15.73259 -15.63600 -15.03592 -14.88491 -14.82221 -14.81091 -14.14810 -14.00966 -13.83811 -13.27921 -13.06282 -12.78328 -12.71173 -12.40104 -12.22682 -12.04060 -11.92413 -11.26771 -11.21273 -11.07036 -11.03458 -10.85686 -10.78155 -10.67766 -9.91739 -9.81716 -9.57409 -9.39792 -9.07738 -8.89314 -8.38730 -8.24495 -6.50881 -6.22399 -3.93046 0.88549 0.96954 2.33937 2.70140 3.03386 3.04760 3.21781 3.27586 3.31886 3.57765 3.71995 3.83353 4.17230 4.19758 4.33979 4.38274 4.60583 4.71871 4.83763 4.86944 4.92926 4.97977 5.11148 5.12786 5.14293 5.25757 5.34788 5.41852 5.47067 5.59177 5.66578 5.75962 5.85463 5.88789 6.03433 6.12871 6.48097 6.60202 6.65927 6.80480 7.13870 7.58793 7.69698 8.01806 8.34444 8.59615 9.22911 10.85030 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026951 B = 0.001715 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.666683 B =16320.520820 C =16937.364410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.302 6.302 3 C 0.403 3.597 4 C -0.308 4.308 5 C 0.216 3.784 6 N -0.585 5.585 7 C 0.605 3.395 8 N -0.676 5.676 9 C 0.141 3.859 10 H 0.114 0.886 11 C -0.164 4.164 12 C 0.126 3.874 13 H 0.112 0.888 14 N -0.728 5.728 15 C 0.532 3.468 16 O -0.518 6.518 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C -0.154 4.154 28 N -0.625 5.625 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.148 0.852 33 H 0.174 0.826 34 H 0.415 0.585 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.079 0.921 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.218 -20.066 16.188 30.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.206 6.206 3 C 0.214 3.786 4 C -0.335 4.335 5 C 0.051 3.949 6 N -0.312 5.312 7 C 0.248 3.752 8 N -0.312 5.312 9 C 0.034 3.966 10 H 0.132 0.868 11 C -0.205 4.205 12 C 0.020 3.980 13 H 0.130 0.870 14 N -0.381 5.381 15 C 0.319 3.681 16 O -0.392 6.392 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.193 4.193 28 N -0.365 5.365 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.166 0.834 33 H 0.191 0.809 34 H 0.253 0.747 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.560 -20.841 15.129 29.584 hybrid contribution 0.752 1.776 0.597 2.018 sum 15.312 -19.065 15.726 29.073 Atomic orbital electron populations 1.22955 0.76556 1.03340 1.02955 1.86254 1.23528 1.24129 1.86647 1.19754 0.89244 0.83914 0.85710 1.21579 0.92441 1.01074 1.18388 1.22770 1.00064 0.85949 0.86105 1.67980 1.03878 1.34006 1.25368 1.18807 0.85515 0.84722 0.86157 1.43879 1.08142 1.01242 1.77910 1.21665 0.97860 0.79913 0.97133 0.86779 1.23999 0.98494 0.99955 0.98033 1.22494 0.97919 0.83614 0.93993 0.86973 1.45970 1.41922 1.07648 1.42577 1.20363 0.78450 0.91000 0.78310 1.90699 1.45834 1.51392 1.51246 1.23541 1.06504 0.94580 1.05867 1.85404 1.44058 1.09417 1.44558 1.22868 1.26510 0.91763 1.27239 0.90919 1.24999 0.94581 0.99223 0.94817 1.70018 1.21668 1.35404 1.23193 0.86163 0.77618 0.83086 0.78598 1.20268 1.20749 1.19700 1.23788 0.99724 0.98666 0.97168 1.67371 1.41499 0.97997 1.29588 0.88265 0.91974 0.91838 0.83427 0.80866 0.74713 0.88581 0.90658 0.76657 0.89208 0.89196 0.92182 0.90186 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.41 101.05 1.05 1.31 16 2 O -0.30 -2.80 10.49 -18.23 -0.19 -2.99 16 3 C 0.40 4.09 7.53 -16.72 -0.13 3.97 16 4 C -0.31 -2.48 10.12 -39.15 -0.40 -2.88 16 5 C 0.22 1.65 11.29 -17.29 -0.20 1.46 16 6 N -0.59 -5.92 9.12 -14.00 -0.13 -6.05 16 7 C 0.60 6.58 8.43 -322.86 -2.72 3.86 16 8 N -0.68 -6.36 5.41 -55.01 -0.30 -6.66 16 9 C 0.14 1.17 4.33 -67.12 -0.29 0.88 16 10 H 0.11 0.94 7.37 -51.93 -0.38 0.56 16 11 C -0.16 -1.62 7.68 -25.92 -0.20 -1.82 16 12 C 0.13 1.36 4.12 -67.12 -0.28 1.09 16 13 H 0.11 1.45 7.46 -51.93 -0.39 1.06 16 14 N -0.73 -9.14 5.35 -53.02 -0.28 -9.42 16 15 C 0.53 9.71 7.85 -10.99 -0.09 9.63 16 16 O -0.52 -11.62 15.46 5.55 0.09 -11.53 16 17 C -0.15 -3.07 6.16 36.00 0.22 -2.84 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 20 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 23 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C -0.15 -1.14 7.58 -25.92 -0.20 -1.34 16 28 N -0.63 -6.94 9.40 -13.99 -0.13 -7.08 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 32 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.42 3.69 8.82 -40.82 -0.36 3.33 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.40 3.76 8.73 -40.82 -0.36 3.40 16 38 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 39 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.59 8.12 -51.93 -0.42 0.17 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -36.40 378.19 -10.44 -46.84 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.68 Total: 3.79 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -3.01 Total: 0.36 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.11 Total: -54.65 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.11 Total: -14.53 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.40 -10.44 -46.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096992889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.168 kcal (2) G-P(sol) polarization free energy of solvation -36.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds