Wall clock time and date at job start Tue Mar 31 2020 21:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38062 * 126.28649 * 2 1 4 4 C 1.47391 * 126.41885 * 359.97090 * 3 2 1 5 5 O 1.21615 * 119.99533 * 269.70876 * 4 3 2 6 6 N 1.34777 * 120.00079 * 89.71318 * 4 3 2 7 7 C 1.46497 * 119.99784 * 179.97438 * 6 4 3 8 8 H 1.09004 * 110.68549 * 32.01450 * 7 6 4 9 9 C 1.55473 * 110.75884 * 268.95579 * 7 6 4 10 10 C 1.55845 * 103.33026 * 241.51705 * 9 7 6 11 11 H 1.08995 * 116.13284 * 159.23532 * 10 9 7 12 12 C 1.55395 * 105.04372 * 288.04104 * 10 9 7 13 13 C 1.54856 * 103.48697 * 72.07116 * 12 10 9 14 14 C 1.55847 * 103.44254 * 359.87601 * 13 12 10 15 15 H 1.08999 * 115.55953 * 158.81518 * 14 13 12 16 16 N 1.50230 * 101.05386 * 32.93707 * 14 13 12 17 17 C 1.36941 * 130.83886 * 125.99743 * 16 14 13 18 18 H 1.07993 * 119.99998 * 350.78882 * 17 16 14 19 19 C 1.38817 * 120.00078 * 170.78495 * 17 16 14 20 20 N 1.31611 * 119.99953 * 157.55728 * 19 17 16 21 21 Si 1.86804 * 119.99920 * 337.84285 * 19 17 16 22 22 H 1.48493 * 109.47594 * 92.05766 * 21 19 17 23 23 H 1.48499 * 109.46730 * 212.05868 * 21 19 17 24 24 H 1.48503 * 109.46769 * 332.05313 * 21 19 17 25 25 C 1.41385 * 107.15956 * 179.70345 * 3 2 1 26 26 Cl 1.73600 * 126.00761 * 180.26057 * 25 3 2 27 27 N 1.30533 * 107.98943 * 0.26825 * 25 3 2 28 28 N 1.34233 * 126.27742 * 180.16176 * 2 1 3 29 29 C 1.46500 * 125.74355 * 359.97438 * 28 2 1 30 30 H 1.09004 * 109.46995 * 89.99526 * 1 2 3 31 31 H 1.09002 * 109.47311 * 209.99935 * 1 2 3 32 32 H 1.09003 * 109.47193 * 329.99569 * 1 2 3 33 33 H 0.96996 * 119.99857 * 359.97438 * 6 4 3 34 34 H 1.09000 * 110.61400 * 123.10005 * 9 7 6 35 35 H 1.09001 * 110.76053 * 0.02562 * 9 7 6 36 36 H 1.08993 * 110.71491 * 313.51761 * 12 10 9 37 37 H 1.08998 * 110.49618 * 190.52240 * 12 10 9 38 38 H 1.08994 * 110.62475 * 241.38647 * 13 12 10 39 39 H 1.09001 * 110.76054 * 118.42555 * 13 12 10 40 40 H 0.97002 * 119.99914 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.47591 * 270.34478 * 29 28 2 42 42 H 1.09009 * 109.46661 * 30.34249 * 29 28 2 43 43 H 1.09003 * 109.47112 * 150.33696 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1129 0.0000 4 6 1.8859 2.5201 -0.0006 5 8 1.7107 3.1019 -1.0541 6 7 1.6795 3.1622 1.1663 7 6 1.2445 4.5611 1.1656 8 1 0.6187 4.7693 0.2978 9 6 2.4688 5.5188 1.1999 10 6 2.2758 6.3010 2.5340 11 1 3.1677 6.7711 2.9482 12 6 1.0791 7.2570 2.2716 13 6 -0.1425 6.3058 2.2391 14 6 0.4857 4.9007 2.4839 15 1 -0.1989 4.1375 2.8538 16 7 1.6296 5.2510 3.3925 17 6 1.9740 4.7666 4.6262 18 1 1.2974 4.1144 5.1584 19 6 3.1928 5.1137 5.1927 20 7 3.3568 5.0417 6.4966 21 14 4.5978 5.6907 4.1052 22 1 4.5604 7.1708 3.9917 23 1 5.8909 5.2726 4.7037 24 1 4.4589 5.0871 2.7555 25 6 3.6599 0.6496 0.0070 26 17 5.0842 1.6420 0.0163 27 7 3.6340 -0.6555 0.0051 28 7 2.3012 -1.0821 -0.0031 29 6 1.8490 -2.4756 -0.0065 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.8190 2.6980 2.0065 34 1 2.4472 6.1998 0.3490 35 1 3.4008 4.9540 1.2170 36 1 1.1949 7.7660 1.3148 37 1 0.9823 7.9788 3.0825 38 1 -0.6325 6.3432 1.2662 39 1 -0.8473 6.5548 3.0325 40 1 4.2086 5.2840 6.8924 41 1 1.7314 -2.8220 1.0203 42 1 0.8930 -2.5460 -0.5255 43 1 2.5861 -3.0955 -0.5169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098294939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:38 Heat of formation + Delta-G solvation = 92.478693 kcal Electronic energy + Delta-G solvation = -28039.472739 eV Core-core repulsion = 24149.167863 eV Total energy + Delta-G solvation = -3890.304876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.65464 -39.88348 -38.31203 -36.84183 -33.81457 -33.66277 -32.58586 -32.31377 -29.69862 -29.24701 -28.68929 -27.36368 -26.97549 -24.01724 -22.92434 -21.37410 -20.65506 -20.17546 -19.66531 -19.10000 -17.53058 -17.06696 -16.44126 -16.11501 -15.92474 -15.32027 -15.11558 -14.59268 -14.20178 -13.76658 -13.57062 -13.54638 -13.37861 -13.29987 -13.11968 -13.01901 -12.74558 -12.55182 -12.22286 -11.71036 -11.66352 -11.57453 -11.30041 -11.06364 -10.92289 -10.84858 -10.78325 -10.56198 -10.19804 -9.97680 -9.65673 -9.43365 -9.39487 -9.28837 -8.83252 -8.74764 -8.57895 -7.25150 -5.94254 -3.19500 1.30617 1.38300 2.12691 2.51324 2.79432 3.32086 3.50604 3.51227 3.65877 4.20922 4.29954 4.53992 4.64281 4.72754 4.76645 5.00699 5.06314 5.15304 5.16617 5.25036 5.33613 5.37101 5.50565 5.53483 5.64993 5.70862 5.80052 5.85305 5.95028 5.97142 6.09622 6.21063 6.28349 6.45474 6.53514 6.53840 6.66858 6.78210 6.89839 7.05647 7.17519 7.35952 7.93325 8.29025 8.55061 8.69434 9.64281 10.23700 11.21927 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.012396 B = 0.004426 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.259831 B = 6324.263158 C = 6997.502847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.135 3.865 3 C -0.266 4.266 4 C 0.595 3.405 5 O -0.541 6.541 6 N -0.696 5.696 7 C 0.129 3.871 8 H 0.088 0.912 9 C -0.146 4.146 10 C 0.120 3.880 11 H 0.092 0.908 12 C -0.131 4.131 13 C -0.125 4.125 14 C 0.136 3.864 15 H 0.098 0.902 16 N -0.604 5.604 17 C -0.228 4.228 18 H 0.096 0.904 19 C 0.021 3.979 20 N -0.911 5.911 21 Si 0.868 3.132 22 H -0.290 1.290 23 H -0.306 1.306 24 H -0.258 1.258 25 C 0.159 3.841 26 Cl 0.021 6.979 27 N -0.282 5.282 28 N -0.351 5.351 29 C 0.098 3.902 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.407 0.593 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.262 0.738 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 -11.392 -13.943 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.005 3.995 3 C -0.282 4.282 4 C 0.379 3.621 5 O -0.418 6.418 6 N -0.345 5.345 7 C 0.023 3.977 8 H 0.106 0.894 9 C -0.186 4.186 10 C 0.013 3.987 11 H 0.109 0.891 12 C -0.171 4.171 13 C -0.165 4.165 14 C 0.027 3.973 15 H 0.116 0.884 16 N -0.327 5.327 17 C -0.354 4.354 18 H 0.114 0.886 19 C -0.177 4.177 20 N -0.555 5.555 21 Si 0.700 3.300 22 H -0.219 1.219 23 H -0.234 1.234 24 H -0.183 1.183 25 C -0.033 4.033 26 Cl 0.049 6.951 27 N -0.107 5.107 28 N -0.133 5.133 29 C -0.043 4.043 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.242 0.758 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.301 -12.166 -14.330 19.826 hybrid contribution 0.999 0.836 -0.004 1.303 sum -5.302 -11.330 -14.334 19.025 Atomic orbital electron populations 1.20592 0.85827 1.04840 1.04248 1.21354 0.94826 0.85522 0.97842 1.19856 0.91134 0.94654 1.22512 1.17107 0.76840 0.84065 0.84117 1.90752 1.51779 1.67830 1.31437 1.46004 1.67065 1.13261 1.08189 1.22740 0.96032 0.79447 0.99526 0.89378 1.23670 0.98610 0.98451 0.97859 1.23086 0.95333 0.90254 0.89988 0.89056 1.22857 0.96375 0.97724 1.00128 1.22858 0.97238 0.96199 1.00227 1.23148 0.90524 0.95403 0.88178 0.88384 1.46853 1.27771 1.40892 1.17174 1.18578 1.01201 1.26940 0.88710 0.88633 1.24692 0.97808 0.99953 0.95286 1.69837 1.25011 1.51925 1.08746 0.87156 0.83134 0.77621 0.82043 1.21931 1.23428 1.18277 1.22538 0.88891 0.90434 1.01429 1.98433 1.35294 1.64702 1.96696 1.77165 0.96616 1.10632 1.26246 1.48026 1.02835 1.06491 1.55982 1.22021 1.01301 0.76811 1.04160 0.89173 0.90122 0.88779 0.75818 0.91801 0.91072 0.92378 0.92048 0.92287 0.91668 0.92829 0.89892 0.88846 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 9.70 36.00 0.35 -0.40 16 2 C 0.14 1.61 7.01 -81.61 -0.57 1.04 16 3 C -0.27 -4.11 5.88 -105.04 -0.62 -4.73 16 4 C 0.60 10.13 7.17 -12.53 -0.09 10.04 16 5 O -0.54 -10.64 16.76 5.26 0.09 -10.55 16 6 N -0.70 -11.69 5.09 -52.15 -0.27 -11.96 16 7 C 0.13 2.21 2.82 -65.10 -0.18 2.02 16 8 H 0.09 1.45 7.23 -51.93 -0.38 1.07 16 9 C -0.15 -2.76 6.04 -23.90 -0.14 -2.90 16 10 C 0.12 2.48 3.57 -63.05 -0.23 2.26 16 11 H 0.09 2.10 3.54 -51.93 -0.18 1.91 16 12 C -0.13 -2.28 6.42 -24.48 -0.16 -2.43 16 13 C -0.13 -1.98 6.44 -24.23 -0.16 -2.13 16 14 C 0.14 2.38 5.06 -62.80 -0.32 2.06 16 15 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 16 N -0.60 -13.42 2.84 -146.08 -0.41 -13.83 16 17 C -0.23 -6.07 10.94 -15.06 -0.16 -6.23 16 18 H 0.10 2.68 8.06 -52.49 -0.42 2.26 16 19 C 0.02 0.59 5.49 -17.43 -0.10 0.49 16 20 N -0.91 -27.67 13.97 55.49 0.78 -26.90 16 21 Si 0.87 22.09 24.65 -169.99 -4.19 17.90 16 22 H -0.29 -7.31 6.67 56.52 0.38 -6.94 16 23 H -0.31 -8.08 7.11 56.52 0.40 -7.68 16 24 H -0.26 -6.27 4.88 56.52 0.28 -5.99 16 25 C 0.16 2.57 7.89 -16.91 -0.13 2.43 16 26 Cl 0.02 0.34 29.19 -51.86 -1.51 -1.17 16 27 N -0.28 -4.19 12.50 33.18 0.41 -3.78 16 28 N -0.35 -4.00 3.98 -63.34 -0.25 -4.25 16 29 C 0.10 0.57 11.05 59.85 0.66 1.23 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.40 7.71 -51.93 -0.40 0.00 16 32 H 0.09 0.79 7.96 -51.93 -0.41 0.37 16 33 H 0.41 6.94 8.64 -40.82 -0.35 6.58 16 34 H 0.06 1.09 7.80 -51.93 -0.41 0.69 16 35 H 0.07 1.50 6.36 -51.93 -0.33 1.17 16 36 H 0.06 0.87 7.80 -51.93 -0.41 0.47 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.06 0.79 7.82 -51.93 -0.41 0.38 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.28 7.64 -51.92 -0.40 -0.11 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -34.51 360.83 -7.68 -42.19 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.91 Total: 4.17 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.85 Total: 2.75 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 0.26 Total: -60.72 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.19 Total: 17.90 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.51 Total: -1.17 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.51 -7.68 -42.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098294939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.671 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds