Wall clock time and date at job start Tue Mar 31 2020 20:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35512 * 116.99673 * 2 1 4 4 C 1.39443 * 120.46160 * 180.02562 * 3 2 1 5 5 C 1.38193 * 118.50436 * 180.02562 * 4 3 2 6 6 N 1.32458 * 119.27065 * 359.97438 * 5 4 3 7 7 C 1.32464 * 120.88758 * 0.02562 * 6 5 4 8 8 N 1.38398 * 119.18578 * 179.97438 * 7 6 5 9 9 C 1.46500 * 120.00172 * 0.02562 * 8 7 6 10 10 C 1.50703 * 109.47244 * 179.97438 * 9 8 7 11 11 C 1.30998 * 119.99974 * 127.14890 * 10 9 8 12 12 C 1.50704 * 120.00208 * 7.56574 * 11 10 9 13 13 N 1.46500 * 109.47231 * 127.00049 * 12 11 10 14 14 C 1.34779 * 119.99707 * 180.02562 * 13 12 11 15 15 O 1.21277 * 120.00235 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99777 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47095 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99941 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00206 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00266 * 180.02562 * 18 17 16 21 21 N 1.31635 * 119.99518 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00465 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47123 * 59.99729 * 22 20 18 24 24 H 1.48494 * 109.47277 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46858 * 299.99773 * 22 20 18 26 26 N 1.32475 * 121.62367 * 0.27079 * 7 6 5 27 27 H 1.09000 * 109.47259 * 59.99735 * 1 2 3 28 28 H 1.08995 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47227 * 300.00090 * 1 2 3 30 30 H 1.07995 * 120.74639 * 359.97438 * 4 3 2 31 31 H 1.08011 * 120.36707 * 180.02562 * 5 4 3 32 32 H 0.97004 * 119.99793 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.47497 * 59.99908 * 9 8 7 34 34 H 1.09000 * 109.47007 * 299.99749 * 9 8 7 35 35 H 1.07995 * 119.99798 * 307.15415 * 10 9 8 36 36 H 1.08002 * 120.00118 * 187.55689 * 11 10 9 37 37 H 1.08999 * 109.47071 * 247.00267 * 12 11 10 38 38 H 1.09005 * 109.46939 * 7.00320 * 12 11 10 39 39 H 0.96995 * 120.00112 * 0.02562 * 13 12 11 40 40 H 1.08999 * 109.47307 * 300.00138 * 16 14 13 41 41 H 1.09005 * 109.46832 * 60.00269 * 16 14 13 42 42 H 0.96996 * 119.99828 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2075 0.0000 4 6 3.4360 1.2917 -0.0005 5 6 4.0209 2.5438 0.0000 6 7 3.2481 3.6196 0.0005 7 6 1.9282 3.5087 0.0010 8 7 1.1545 4.6562 0.0021 9 6 1.7969 5.9728 0.0021 10 6 0.7403 7.0474 0.0027 11 6 0.7699 7.9946 0.9072 12 6 1.9489 8.1104 1.8387 13 7 2.4789 9.4752 1.7883 14 6 3.5423 9.8135 2.5443 15 8 4.0606 8.9880 3.2658 16 6 4.0878 11.2173 2.4920 17 16 5.5046 11.3559 3.6099 18 6 5.9297 13.0470 3.3567 19 1 5.3566 13.6508 2.6686 20 6 7.0018 13.6031 4.0409 21 7 7.7006 12.8671 4.8792 22 14 7.4530 15.3957 3.7720 23 1 6.3028 16.2571 4.1463 24 1 8.6255 15.7428 4.6144 25 1 7.7889 15.6124 2.3417 26 7 1.3304 2.3265 0.0063 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0432 0.3986 -0.0005 31 1 5.0964 2.6441 -0.0008 32 1 0.1868 4.5887 0.0021 33 1 2.4174 6.0745 -0.8883 34 1 2.4187 6.0737 0.8917 35 1 -0.0413 7.0365 -0.7424 36 1 -0.0505 8.6927 0.9852 37 1 1.6320 7.8810 2.8561 38 1 2.7242 7.4080 1.5326 39 1 2.0646 10.1354 1.2110 40 1 4.4045 11.4464 1.4745 41 1 3.3128 11.9199 2.7983 42 1 8.4495 13.2558 5.3576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107048826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:18 Heat of formation + Delta-G solvation = 10.246642 kcal Electronic energy + Delta-G solvation = -24605.751158 eV Core-core repulsion = 20713.924138 eV Total energy + Delta-G solvation = -3891.827019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.39368 -39.29452 -38.95140 -37.33018 -35.26291 -33.53933 -33.01203 -32.41685 -30.92360 -29.49038 -27.85281 -26.85561 -25.57124 -25.10286 -24.06088 -23.09056 -20.44346 -19.62135 -19.00586 -18.33737 -17.67001 -16.83977 -16.57648 -16.48950 -16.21384 -15.60720 -15.46964 -15.33485 -15.05455 -14.79663 -14.73306 -14.39800 -13.99645 -13.88296 -13.73700 -13.29295 -13.05642 -12.70211 -12.48635 -12.43042 -12.05102 -11.82007 -11.27771 -11.19364 -11.03609 -11.03040 -10.90836 -10.76335 -10.04904 -9.82462 -9.77017 -9.55081 -9.33845 -9.05246 -8.85390 -8.35667 -8.22850 -6.48901 -6.20445 -3.91124 0.91811 0.99901 1.43435 2.47248 2.77869 3.09722 3.10692 3.24292 3.28816 3.34487 3.62965 3.80039 3.86754 4.21503 4.33225 4.47865 4.56792 4.64590 4.82384 4.86631 4.89051 5.04504 5.13994 5.14533 5.15236 5.22026 5.26268 5.46134 5.53488 5.55114 5.73778 5.80134 5.89831 6.08554 6.14575 6.26484 6.47275 6.59179 6.60036 6.81291 7.13372 7.60176 7.69915 8.04093 8.35980 8.60868 9.24629 10.86916 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022507 B = 0.001629 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.786078 B =17185.064334 C =18036.455999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.302 6.302 3 C 0.400 3.600 4 C -0.306 4.306 5 C 0.219 3.781 6 N -0.583 5.583 7 C 0.600 3.400 8 N -0.691 5.691 9 C 0.152 3.848 10 C -0.165 4.165 11 C -0.139 4.139 12 C 0.134 3.866 13 N -0.735 5.735 14 C 0.531 3.469 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.059 6.059 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 N -0.627 5.627 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.149 0.851 31 H 0.177 0.823 32 H 0.413 0.587 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.592 -21.371 -13.890 30.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.206 6.206 3 C 0.212 3.788 4 C -0.333 4.333 5 C 0.054 3.946 6 N -0.310 5.310 7 C 0.242 3.758 8 N -0.328 5.328 9 C 0.029 3.971 10 C -0.184 4.184 11 C -0.158 4.158 12 C 0.010 3.990 13 N -0.390 5.390 14 C 0.317 3.683 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 N -0.367 5.367 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.167 0.833 31 H 0.194 0.806 32 H 0.250 0.750 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.931 -22.089 -12.528 30.521 hybrid contribution -0.842 1.720 -1.332 2.333 sum -17.773 -20.369 -13.859 30.379 Atomic orbital electron populations 1.22922 0.76810 1.03227 1.02743 1.86263 1.23338 1.24171 1.86780 1.19737 0.89258 0.83847 0.85973 1.21604 0.92410 1.01121 1.18158 1.22833 1.00251 0.85831 0.85656 1.68026 1.03811 1.34180 1.25016 1.18838 0.85595 0.84716 0.86617 1.44057 1.08174 1.01653 1.78906 1.20539 0.93979 0.78625 1.03917 1.22856 1.00292 0.96819 0.98471 1.23034 0.98152 0.99591 0.95072 1.20498 0.94078 0.85091 0.99304 1.45939 1.33539 1.12254 1.47260 1.20333 0.79014 0.90024 0.78883 1.90711 1.58012 1.51553 1.38721 1.23530 1.05232 0.95043 1.06561 1.85410 1.30212 1.14884 1.52778 1.22834 1.18846 0.96134 1.30690 0.90972 1.24990 0.95163 0.98900 0.94491 1.70010 1.18707 1.36259 1.25294 0.86223 0.78037 0.82866 0.78365 1.19965 1.20813 1.19939 1.67327 1.41520 0.97994 1.29865 0.92101 0.88348 0.91999 0.83338 0.80650 0.75014 0.90361 0.89468 0.86005 0.85817 0.90706 0.90048 0.76720 0.89154 0.89203 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.41 101.05 1.05 1.29 16 2 O -0.30 -2.74 10.49 -18.23 -0.19 -2.93 16 3 C 0.40 4.11 7.53 -16.72 -0.13 3.98 16 4 C -0.31 -2.69 10.12 -39.15 -0.40 -3.09 16 5 C 0.22 1.98 11.29 -17.30 -0.20 1.78 16 6 N -0.58 -6.69 9.58 -14.00 -0.13 -6.82 16 7 C 0.60 6.69 8.42 -322.88 -2.72 3.97 16 8 N -0.69 -6.16 5.70 -63.50 -0.36 -6.53 16 9 C 0.15 1.32 5.73 -5.19 -0.03 1.29 16 10 C -0.16 -1.11 9.63 -36.02 -0.35 -1.45 16 11 C -0.14 -1.04 9.63 -36.02 -0.35 -1.39 16 12 C 0.13 1.50 5.76 -5.19 -0.03 1.47 16 13 N -0.74 -9.51 5.55 -61.47 -0.34 -9.85 16 14 C 0.53 9.84 7.85 -10.99 -0.09 9.76 16 15 O -0.52 -11.75 15.86 5.56 0.09 -11.67 16 16 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 22 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 N -0.63 -6.83 9.40 -13.99 -0.13 -6.96 16 27 H 0.06 0.37 8.12 -51.93 -0.42 -0.05 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.40 8.11 -51.93 -0.42 -0.03 16 30 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.18 1.02 8.06 -52.48 -0.42 0.59 16 32 H 0.41 2.96 8.58 -40.82 -0.35 2.61 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.92 5.30 -51.93 -0.28 0.65 16 35 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 36 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.01 5.30 -51.93 -0.27 0.74 16 39 H 0.40 3.92 8.46 -40.82 -0.35 3.57 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 41 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -36.74 381.68 -10.07 -46.81 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.44 Total: 3.32 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -2.81 Total: 1.80 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.23 Total: -55.60 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.10 Total: -14.60 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.74 -10.07 -46.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107048826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.055 kcal (2) G-P(sol) polarization free energy of solvation -36.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds