Wall clock time and date at job start Tue Mar 31 2020 20:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35512 * 116.99673 * 2 1 4 4 C 1.39443 * 120.46160 * 180.02562 * 3 2 1 5 5 C 1.38193 * 118.50436 * 180.02562 * 4 3 2 6 6 N 1.32458 * 119.27065 * 359.97438 * 5 4 3 7 7 C 1.32464 * 120.88758 * 0.02562 * 6 5 4 8 8 N 1.38398 * 119.18578 * 179.97438 * 7 6 5 9 9 C 1.46500 * 120.00172 * 0.02562 * 8 7 6 10 10 C 1.50703 * 109.47244 * 179.97438 * 9 8 7 11 11 C 1.30998 * 119.99974 * 127.14890 * 10 9 8 12 12 C 1.50704 * 120.00208 * 7.56574 * 11 10 9 13 13 N 1.46500 * 109.47231 * 127.00049 * 12 11 10 14 14 C 1.34779 * 119.99707 * 180.02562 * 13 12 11 15 15 O 1.21277 * 120.00235 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99777 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47095 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99941 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00206 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00266 * 180.02562 * 18 17 16 21 21 N 1.31635 * 119.99518 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00465 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47123 * 59.99729 * 22 20 18 24 24 H 1.48494 * 109.47277 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46858 * 299.99773 * 22 20 18 26 26 N 1.32475 * 121.62367 * 0.27079 * 7 6 5 27 27 H 1.09000 * 109.47259 * 59.99735 * 1 2 3 28 28 H 1.08995 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47227 * 300.00090 * 1 2 3 30 30 H 1.07995 * 120.74639 * 359.97438 * 4 3 2 31 31 H 1.08011 * 120.36707 * 180.02562 * 5 4 3 32 32 H 0.97004 * 119.99793 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.47497 * 59.99908 * 9 8 7 34 34 H 1.09000 * 109.47007 * 299.99749 * 9 8 7 35 35 H 1.07995 * 119.99798 * 307.15415 * 10 9 8 36 36 H 1.08002 * 120.00118 * 187.55689 * 11 10 9 37 37 H 1.08999 * 109.47071 * 247.00267 * 12 11 10 38 38 H 1.09005 * 109.46939 * 7.00320 * 12 11 10 39 39 H 0.96995 * 120.00112 * 0.02562 * 13 12 11 40 40 H 1.08999 * 109.47307 * 300.00138 * 16 14 13 41 41 H 1.09005 * 109.46832 * 60.00269 * 16 14 13 42 42 H 0.96996 * 119.99828 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2075 0.0000 4 6 3.4360 1.2917 -0.0005 5 6 4.0209 2.5438 0.0000 6 7 3.2481 3.6196 0.0005 7 6 1.9282 3.5087 0.0010 8 7 1.1545 4.6562 0.0021 9 6 1.7969 5.9728 0.0021 10 6 0.7403 7.0474 0.0027 11 6 0.7699 7.9946 0.9072 12 6 1.9489 8.1104 1.8387 13 7 2.4789 9.4752 1.7883 14 6 3.5423 9.8135 2.5443 15 8 4.0606 8.9880 3.2658 16 6 4.0878 11.2173 2.4920 17 16 5.5046 11.3559 3.6099 18 6 5.9297 13.0470 3.3567 19 1 5.3566 13.6508 2.6686 20 6 7.0018 13.6031 4.0409 21 7 7.7006 12.8671 4.8792 22 14 7.4530 15.3957 3.7720 23 1 6.3028 16.2571 4.1463 24 1 8.6255 15.7428 4.6144 25 1 7.7889 15.6124 2.3417 26 7 1.3304 2.3265 0.0063 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0432 0.3986 -0.0005 31 1 5.0964 2.6441 -0.0008 32 1 0.1868 4.5887 0.0021 33 1 2.4174 6.0745 -0.8883 34 1 2.4187 6.0737 0.8917 35 1 -0.0413 7.0365 -0.7424 36 1 -0.0505 8.6927 0.9852 37 1 1.6320 7.8810 2.8561 38 1 2.7242 7.4080 1.5326 39 1 2.0646 10.1354 1.2110 40 1 4.4045 11.4464 1.4745 41 1 3.3128 11.9199 2.7983 42 1 8.4495 13.2558 5.3576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107048826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:17 Heat of formation + Delta-G solvation = -17.039522 kcal Electronic energy + Delta-G solvation = -24606.934375 eV Core-core repulsion = 20713.924138 eV Total energy + Delta-G solvation = -3893.010236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.11369 -40.64628 -39.65591 -38.13411 -36.21830 -34.57280 -34.41613 -33.89909 -31.74236 -30.86510 -28.42493 -27.86580 -27.50357 -26.07958 -24.75687 -23.82199 -21.82572 -20.44555 -19.81686 -19.63882 -18.91660 -17.82560 -17.56872 -17.25431 -17.23254 -16.86448 -16.69450 -16.28130 -16.26339 -16.01879 -15.69681 -15.49431 -15.10629 -14.80430 -14.61229 -14.48374 -14.37433 -14.14399 -13.53447 -13.18425 -13.15433 -12.92486 -12.84888 -12.66883 -12.61160 -11.99986 -11.90728 -11.73389 -11.64234 -11.11395 -11.06963 -10.68683 -10.43984 -10.30717 -10.25978 -9.95063 -9.08157 -8.65359 -8.32931 -6.11286 0.19818 0.24468 0.78210 1.30221 1.45341 1.49320 1.59113 1.62115 1.81977 2.13326 2.28913 2.46311 2.87540 3.01111 3.19515 3.34717 3.65538 3.77713 3.94125 4.02029 4.04417 4.14155 4.32179 4.36895 4.37562 4.42414 4.46557 4.53039 4.53547 4.69507 4.71626 4.74373 4.94253 5.13210 5.36304 5.43092 5.47817 5.67319 5.76540 5.91155 6.15692 6.21113 6.42922 6.52709 7.08121 7.25763 7.30923 8.76041 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022507 B = 0.001629 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.786078 B =17185.064334 C =18036.455999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.309 6.309 3 C 0.383 3.617 4 C -0.305 4.305 5 C 0.211 3.789 6 N -0.610 5.610 7 C 0.582 3.418 8 N -0.685 5.685 9 C 0.154 3.846 10 C -0.145 4.145 11 C -0.138 4.138 12 C 0.131 3.869 13 N -0.707 5.707 14 C 0.532 3.468 15 O -0.568 6.568 16 C -0.129 4.129 17 S -0.154 6.154 18 C -0.548 4.548 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.262 1.262 26 N -0.636 5.636 27 H 0.059 0.941 28 H 0.126 0.874 29 H 0.056 0.944 30 H 0.171 0.829 31 H 0.204 0.796 32 H 0.421 0.579 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.419 0.581 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.463 -20.532 -15.862 32.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.213 6.213 3 C 0.195 3.805 4 C -0.331 4.331 5 C 0.048 3.952 6 N -0.338 5.338 7 C 0.224 3.776 8 N -0.322 5.322 9 C 0.031 3.969 10 C -0.164 4.164 11 C -0.157 4.157 12 C 0.008 3.992 13 N -0.361 5.361 14 C 0.318 3.682 15 O -0.446 6.446 16 C -0.280 4.280 17 S 0.073 5.927 18 C -0.695 4.695 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.186 1.186 26 N -0.376 5.376 27 H 0.078 0.922 28 H 0.144 0.856 29 H 0.075 0.925 30 H 0.189 0.811 31 H 0.220 0.780 32 H 0.259 0.741 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.256 0.744 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.869 -21.257 -14.548 31.930 hybrid contribution -0.353 1.292 -0.783 1.551 sum -19.222 -19.965 -15.331 31.672 Atomic orbital electron populations 1.23125 0.75436 1.05007 1.02421 1.86260 1.24766 1.23613 1.86648 1.20102 0.90072 0.84091 0.86236 1.21895 0.92199 1.01887 1.17117 1.23366 1.01438 0.85528 0.84895 1.68056 1.04283 1.35426 1.26023 1.19134 0.85932 0.85362 0.87162 1.44039 1.08453 1.01179 1.78541 1.20453 0.94605 0.79341 1.02518 1.22951 0.99805 0.95226 0.98404 1.22926 0.97395 1.01033 0.94374 1.20573 0.95345 0.83392 0.99876 1.45660 1.31400 1.13573 1.45471 1.20116 0.80009 0.88957 0.79149 1.90700 1.60033 1.52591 1.41270 1.23369 1.02412 0.96834 1.05367 1.85610 1.34925 1.15906 1.56225 1.23188 1.19275 0.96138 1.30934 0.89796 1.26137 0.94895 1.04222 0.93890 1.70184 1.19393 1.38677 1.26542 0.84996 0.77970 0.76216 0.78764 1.18632 1.20470 1.18630 1.67335 1.41783 0.98142 1.30340 0.92209 0.85552 0.92492 0.81125 0.77966 0.74076 0.90979 0.91769 0.82941 0.82996 0.91969 0.91425 0.74386 0.87064 0.86992 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.41 113.37 1.18 1.58 16 2 O -0.31 -5.42 10.49 -88.15 -0.92 -6.34 16 3 C 0.38 7.77 7.53 84.85 0.64 8.41 16 4 C -0.30 -5.17 10.12 22.55 0.23 -4.94 16 5 C 0.21 3.75 11.29 84.59 0.95 4.71 16 6 N -0.61 -14.15 9.58 -198.22 -1.90 -16.05 16 7 C 0.58 13.03 8.42 261.51 2.20 15.24 16 8 N -0.68 -11.86 5.70 -354.83 -2.02 -13.88 16 9 C 0.15 2.57 5.73 85.63 0.49 3.06 16 10 C -0.14 -1.55 9.63 25.65 0.25 -1.30 16 11 C -0.14 -1.68 9.63 25.65 0.25 -1.43 16 12 C 0.13 2.83 5.76 85.63 0.49 3.33 16 13 N -0.71 -17.13 5.55 -466.78 -2.59 -19.72 16 14 C 0.53 19.55 7.85 87.66 0.69 20.24 16 15 O -0.57 -26.69 15.86 -3.02 -0.05 -26.74 16 16 C -0.13 -5.04 6.16 71.23 0.44 -4.60 16 17 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 18 C -0.55 -31.25 9.50 67.95 0.65 -30.60 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.76 5.49 84.86 0.47 1.22 16 21 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 22 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 23 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 N -0.64 -13.81 9.40 -310.89 -2.92 -16.74 16 27 H 0.06 0.69 8.12 -2.39 -0.02 0.67 16 28 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.70 8.11 -2.39 -0.02 0.68 16 30 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 31 H 0.20 2.18 8.06 -2.90 -0.02 2.16 16 32 H 0.42 5.57 8.58 -92.71 -0.80 4.78 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.40 5.30 -2.39 -0.01 1.38 16 35 H 0.15 0.84 8.06 -2.91 -0.02 0.81 16 36 H 0.15 1.11 8.06 -2.91 -0.02 1.08 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.71 5.30 -2.38 -0.01 1.69 16 39 H 0.42 6.91 8.46 -92.71 -0.78 6.13 16 40 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 41 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 42 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -83.53 381.68 -0.84 -84.37 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -0.51 Total: 20.38 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 8.92 Total: 14.89 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -9.15 Total: -122.31 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.97 Total: -33.08 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -83.53 -0.84 -84.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107048826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.326 kcal (2) G-P(sol) polarization free energy of solvation -83.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds