Wall clock time and date at job start Tue Mar 31 2020 20:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99980 * 2 1 4 4 H 1.48507 * 109.46967 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47091 * 299.99816 * 3 2 1 6 6 H 1.48497 * 109.47100 * 60.00171 * 3 2 1 7 7 C 1.38811 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99745 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.50236 * 130.83885 * 0.03083 * 9 7 2 11 11 H 1.08992 * 116.45959 * 359.97438 * 10 9 7 12 12 C 1.55850 * 101.04975 * 233.96438 * 10 9 7 13 13 C 1.54855 * 103.44323 * 327.06447 * 12 10 9 14 14 C 1.50235 * 130.83617 * 180.02562 * 9 7 2 15 15 H 1.09003 * 116.45947 * 359.97438 * 14 9 7 16 16 C 1.55848 * 101.04899 * 233.96877 * 14 9 7 17 17 H 1.09002 * 110.76226 * 85.62164 * 16 14 9 18 18 N 1.46503 * 110.62779 * 208.57217 * 16 14 9 19 19 C 1.34778 * 119.99717 * 270.00634 * 18 16 14 20 20 O 1.21279 * 120.00587 * 0.02562 * 19 18 16 21 21 C 1.50701 * 119.99333 * 179.97438 * 19 18 16 22 22 C 1.53006 * 109.46943 * 179.97438 * 21 19 18 23 23 N 1.46503 * 109.47326 * 180.02562 * 22 21 19 24 24 C 1.35039 * 126.03800 * 125.26014 * 23 22 21 25 25 C 1.35375 * 107.72825 * 180.14567 * 24 23 22 26 26 Cl 1.73602 * 126.04788 * 179.87274 * 25 24 23 27 27 C 1.39932 * 107.90308 * 359.61401 * 25 24 23 28 28 N 1.30846 * 108.21606 * 0.23947 * 27 25 24 29 29 C 1.54849 * 103.44809 * 327.06567 * 16 14 9 30 30 H 0.96999 * 119.99506 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.62495 * 85.55062 * 12 10 9 32 32 H 1.08995 * 110.62610 * 208.57485 * 12 10 9 33 33 H 1.08993 * 110.62843 * 118.49141 * 13 12 10 34 34 H 1.09005 * 110.62317 * 241.35207 * 13 12 10 35 35 H 0.97002 * 119.99754 * 90.00202 * 18 16 14 36 36 H 1.08998 * 109.47159 * 60.00057 * 21 19 18 37 37 H 1.08997 * 109.47317 * 299.99805 * 21 19 18 38 38 H 1.08998 * 109.46992 * 60.00144 * 22 21 19 39 39 H 1.08997 * 109.47110 * 300.00122 * 22 21 19 40 40 H 1.08001 * 126.13670 * 0.02562 * 24 23 22 41 41 H 1.08006 * 125.88517 * 180.21870 * 27 25 24 42 42 H 1.08995 * 110.63061 * 118.48511 * 29 16 14 43 43 H 1.08999 * 110.62429 * 241.51652 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1501 -2.6705 -0.0006 11 1 -0.8105 -1.8035 -0.0003 12 6 -0.2744 -3.6104 1.2363 13 6 1.0667 -4.3847 1.2364 14 6 1.8186 -3.8072 -0.0005 15 1 2.8998 -3.9456 -0.0010 16 6 1.0668 -4.3846 -1.2375 17 1 1.6233 -4.1888 -2.1541 18 7 0.8330 -5.8217 -1.0748 19 6 1.7478 -6.7075 -1.5163 20 8 2.7648 -6.3150 -2.0479 21 6 1.5075 -8.1857 -1.3484 22 6 2.6893 -8.9639 -1.9306 23 7 2.4555 -10.4009 -1.7679 24 6 2.4743 -11.3253 -2.7521 25 6 2.2093 -12.5290 -2.1923 26 17 2.1146 -14.0467 -3.0299 27 6 2.0310 -12.3344 -0.8181 28 7 2.1784 -11.0595 -0.5630 29 6 -0.2742 -3.6103 -1.2376 30 1 -0.4849 0.8401 -0.0004 31 1 -0.3817 -3.0283 2.1516 32 1 -1.1133 -4.2956 1.1151 33 1 1.6244 -4.1866 2.1516 34 1 0.8926 -5.4542 1.1180 35 1 0.0198 -6.1356 -0.6493 36 1 0.5941 -8.4672 -1.8724 37 1 1.4051 -8.4191 -0.2887 38 1 3.6029 -8.6825 -1.4069 39 1 2.7914 -8.7304 -2.9903 40 1 2.6646 -11.1377 -3.7986 41 1 1.8096 -13.1038 -0.0932 42 1 -0.3815 -3.0282 -2.1528 43 1 -1.1132 -4.2955 -1.1164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110142680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:09 Heat of formation + Delta-G solvation = 84.735916 kcal Electronic energy + Delta-G solvation = -26519.897783 eV Core-core repulsion = 22629.257155 eV Total energy + Delta-G solvation = -3890.640628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.63576 -40.14177 -38.55484 -36.75708 -34.55415 -34.02821 -32.39025 -31.01709 -29.88910 -29.26095 -29.02827 -27.57438 -25.00865 -24.04816 -21.64700 -21.55831 -21.19109 -20.38918 -19.57490 -18.60233 -18.00822 -17.16199 -16.64792 -16.15579 -15.70457 -15.19156 -14.97883 -14.83293 -14.56195 -14.41118 -14.00787 -13.68661 -13.55300 -13.33139 -12.76973 -12.36854 -12.33174 -12.04168 -11.83306 -11.78799 -11.57522 -11.54542 -11.09381 -10.97306 -10.93897 -10.88625 -10.81153 -10.27512 -10.11101 -9.99367 -9.92499 -9.77498 -9.43176 -9.29936 -8.97963 -8.78731 -8.60233 -6.96018 -5.76946 -3.14979 1.35852 1.58499 2.22281 2.41822 2.67658 3.31397 3.37307 3.43131 3.45011 4.16054 4.34218 4.41793 4.44818 4.59671 4.82100 4.98938 5.08441 5.14887 5.20153 5.33612 5.39357 5.47815 5.51388 5.74182 5.79231 5.91291 5.98213 6.01140 6.06373 6.24004 6.27599 6.42976 6.47849 6.53998 6.60379 6.75025 6.89479 6.93960 7.16130 7.21549 7.48640 7.63957 7.76134 8.11000 8.32568 9.06468 9.68902 10.48691 11.32921 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.034609 B = 0.001927 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.842830 B =14529.597386 C =14774.338926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.210 4.210 8 H 0.080 0.920 9 N -0.589 5.589 10 C 0.156 3.844 11 H 0.153 0.847 12 C -0.138 4.138 13 C -0.131 4.131 14 C 0.129 3.871 15 H 0.085 0.915 16 C 0.126 3.874 17 H 0.085 0.915 18 N -0.708 5.708 19 C 0.514 3.486 20 O -0.546 6.546 21 C -0.154 4.154 22 C 0.150 3.850 23 N -0.361 5.361 24 C 0.076 3.924 25 C -0.192 4.192 26 Cl -0.046 7.046 27 C 0.062 3.938 28 N -0.279 5.279 29 C -0.142 4.142 30 H 0.253 0.747 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.397 0.603 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.184 0.816 41 H 0.191 0.809 42 H 0.065 0.935 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.439 -23.843 -4.132 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.748 3.252 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.338 4.338 8 H 0.098 0.902 9 N -0.309 5.309 10 C 0.049 3.951 11 H 0.170 0.830 12 C -0.177 4.177 13 C -0.171 4.171 14 C 0.020 3.980 15 H 0.103 0.897 16 C 0.020 3.980 17 H 0.103 0.897 18 N -0.358 5.358 19 C 0.299 3.701 20 O -0.424 6.424 21 C -0.195 4.195 22 C 0.030 3.970 23 N -0.143 5.143 24 C -0.072 4.072 25 C -0.231 4.231 26 Cl -0.018 7.018 27 C -0.124 4.124 28 N -0.100 5.100 29 C -0.182 4.182 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.231 0.769 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.201 0.799 41 H 0.208 0.792 42 H 0.084 0.916 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.349 -22.231 -3.700 22.539 hybrid contribution 0.011 -0.233 -0.488 0.541 sum 0.359 -22.463 -4.188 22.853 Atomic orbital electron populations 1.69475 1.04996 1.24922 1.57736 1.24716 0.95681 0.97567 1.02852 0.85951 0.78680 0.83379 0.77211 1.20524 1.21764 1.21792 1.19107 0.90406 0.81816 1.42491 0.90228 1.46460 1.01546 0.98795 1.84122 1.23704 0.87689 0.95072 0.88609 0.83006 1.23065 0.95101 0.98207 1.01363 1.22924 0.97679 0.97475 0.99008 1.23168 0.96165 0.86160 0.92536 0.89689 1.22703 0.98223 0.76612 1.00453 0.89726 1.46244 1.22197 1.07373 1.59985 1.20178 0.83835 0.87547 0.78561 1.90729 1.27087 1.80726 1.43868 1.21889 0.99794 0.92775 1.05055 1.21577 0.99202 0.72328 1.03909 1.48654 1.53335 1.07610 1.04654 1.22319 1.00729 0.88150 0.95999 1.20783 1.20794 0.88299 0.93240 1.98329 1.97619 1.28395 1.77449 1.23901 0.99758 0.94298 0.94480 1.77505 1.21960 1.05915 1.04620 1.23310 0.93967 0.98465 1.02430 0.93600 0.92602 0.93636 0.93019 0.93144 0.76865 0.88479 0.87406 0.88143 0.87280 0.79917 0.79233 0.91578 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.84 10.48 55.49 0.58 -25.25 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.92 21.81 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.21 -5.71 10.59 -15.06 -0.16 -5.87 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.59 -14.33 2.99 -145.82 -0.44 -14.77 16 10 C 0.16 3.41 4.69 -62.80 -0.29 3.12 16 11 H 0.15 3.82 5.57 -51.93 -0.29 3.53 16 12 C -0.14 -2.57 6.44 -24.23 -0.16 -2.73 16 13 C -0.13 -2.33 6.31 -24.24 -0.15 -2.48 16 14 C 0.13 2.60 5.35 -62.80 -0.34 2.27 16 15 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 16 C 0.13 2.22 3.14 -65.43 -0.21 2.01 16 17 H 0.08 1.69 7.58 -51.93 -0.39 1.29 16 18 N -0.71 -9.39 3.71 -51.39 -0.19 -9.58 16 19 C 0.51 6.64 7.83 -10.98 -0.09 6.56 16 20 O -0.55 -9.12 15.64 5.56 0.09 -9.04 16 21 C -0.15 -1.39 5.89 -27.88 -0.16 -1.55 16 22 C 0.15 1.32 5.80 -4.04 -0.02 1.29 16 23 N -0.36 -3.31 3.68 -61.32 -0.23 -3.53 16 24 C 0.08 0.60 11.43 -17.16 -0.20 0.41 16 25 C -0.19 -1.63 6.65 -39.97 -0.27 -1.89 16 26 Cl -0.05 -0.36 29.30 -51.86 -1.52 -1.88 16 27 C 0.06 0.54 12.02 -17.34 -0.21 0.34 16 28 N -0.28 -2.91 12.42 30.64 0.38 -2.53 16 29 C -0.14 -2.58 6.20 -24.24 -0.15 -2.73 16 30 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.71 7.81 -51.93 -0.41 0.31 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.75 6.40 -51.93 -0.33 0.42 16 35 H 0.40 4.29 7.92 -40.82 -0.32 3.97 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.10 0.97 8.10 -51.93 -0.42 0.55 16 39 H 0.11 0.82 8.03 -51.93 -0.42 0.40 16 40 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.19 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.05 0.83 7.38 -51.93 -0.38 0.44 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -31.31 366.83 -9.21 -40.52 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.89 Total: 5.47 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.49 Total: -1.71 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.11 Total: -55.67 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.52 Total: -1.88 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.31 -9.21 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110142680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.255 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds