Wall clock time and date at job start Tue Mar 31 2020 20:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99980 * 2 1 4 4 H 1.48507 * 109.46967 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47091 * 299.99816 * 3 2 1 6 6 H 1.48497 * 109.47100 * 60.00171 * 3 2 1 7 7 C 1.38811 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99745 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.50236 * 130.83885 * 0.03083 * 9 7 2 11 11 H 1.08992 * 116.45959 * 359.97438 * 10 9 7 12 12 C 1.55850 * 101.04975 * 233.96438 * 10 9 7 13 13 C 1.54855 * 103.44323 * 327.06447 * 12 10 9 14 14 C 1.50235 * 130.83617 * 180.02562 * 9 7 2 15 15 H 1.09003 * 116.45947 * 359.97438 * 14 9 7 16 16 C 1.55848 * 101.04899 * 233.96877 * 14 9 7 17 17 H 1.09002 * 110.76226 * 85.62164 * 16 14 9 18 18 N 1.46503 * 110.62779 * 208.57217 * 16 14 9 19 19 C 1.34778 * 119.99717 * 270.00634 * 18 16 14 20 20 O 1.21279 * 120.00587 * 0.02562 * 19 18 16 21 21 C 1.50701 * 119.99333 * 179.97438 * 19 18 16 22 22 C 1.53006 * 109.46943 * 179.97438 * 21 19 18 23 23 N 1.46503 * 109.47326 * 180.02562 * 22 21 19 24 24 C 1.35039 * 126.03800 * 125.26014 * 23 22 21 25 25 C 1.35375 * 107.72825 * 180.14567 * 24 23 22 26 26 Cl 1.73602 * 126.04788 * 179.87274 * 25 24 23 27 27 C 1.39932 * 107.90308 * 359.61401 * 25 24 23 28 28 N 1.30846 * 108.21606 * 0.23947 * 27 25 24 29 29 C 1.54849 * 103.44809 * 327.06567 * 16 14 9 30 30 H 0.96999 * 119.99506 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.62495 * 85.55062 * 12 10 9 32 32 H 1.08995 * 110.62610 * 208.57485 * 12 10 9 33 33 H 1.08993 * 110.62843 * 118.49141 * 13 12 10 34 34 H 1.09005 * 110.62317 * 241.35207 * 13 12 10 35 35 H 0.97002 * 119.99754 * 90.00202 * 18 16 14 36 36 H 1.08998 * 109.47159 * 60.00057 * 21 19 18 37 37 H 1.08997 * 109.47317 * 299.99805 * 21 19 18 38 38 H 1.08998 * 109.46992 * 60.00144 * 22 21 19 39 39 H 1.08997 * 109.47110 * 300.00122 * 22 21 19 40 40 H 1.08001 * 126.13670 * 0.02562 * 24 23 22 41 41 H 1.08006 * 125.88517 * 180.21870 * 27 25 24 42 42 H 1.08995 * 110.63061 * 118.48511 * 29 16 14 43 43 H 1.08999 * 110.62429 * 241.51652 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1501 -2.6705 -0.0006 11 1 -0.8105 -1.8035 -0.0003 12 6 -0.2744 -3.6104 1.2363 13 6 1.0667 -4.3847 1.2364 14 6 1.8186 -3.8072 -0.0005 15 1 2.8998 -3.9456 -0.0010 16 6 1.0668 -4.3846 -1.2375 17 1 1.6233 -4.1888 -2.1541 18 7 0.8330 -5.8217 -1.0748 19 6 1.7478 -6.7075 -1.5163 20 8 2.7648 -6.3150 -2.0479 21 6 1.5075 -8.1857 -1.3484 22 6 2.6893 -8.9639 -1.9306 23 7 2.4555 -10.4009 -1.7679 24 6 2.4743 -11.3253 -2.7521 25 6 2.2093 -12.5290 -2.1923 26 17 2.1146 -14.0467 -3.0299 27 6 2.0310 -12.3344 -0.8181 28 7 2.1784 -11.0595 -0.5630 29 6 -0.2742 -3.6103 -1.2376 30 1 -0.4849 0.8401 -0.0004 31 1 -0.3817 -3.0283 2.1516 32 1 -1.1133 -4.2956 1.1151 33 1 1.6244 -4.1866 2.1516 34 1 0.8926 -5.4542 1.1180 35 1 0.0198 -6.1356 -0.6493 36 1 0.5941 -8.4672 -1.8724 37 1 1.4051 -8.4191 -0.2887 38 1 3.6029 -8.6825 -1.4069 39 1 2.7914 -8.7304 -2.9903 40 1 2.6646 -11.1377 -3.7986 41 1 1.8096 -13.1038 -0.0932 42 1 -0.3815 -3.0282 -2.1528 43 1 -1.1132 -4.2955 -1.1164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110142680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:08 Heat of formation + Delta-G solvation = 65.922689 kcal Electronic energy + Delta-G solvation = -26520.713586 eV Core-core repulsion = 22629.257155 eV Total energy + Delta-G solvation = -3891.456431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.26768 -41.47599 -39.89283 -37.35155 -35.51571 -35.22158 -34.21177 -31.76397 -31.02009 -30.83295 -30.33061 -29.02274 -26.33277 -25.41852 -22.90143 -22.24996 -22.13859 -21.54697 -21.06637 -20.13232 -18.98327 -18.68330 -17.65642 -17.04434 -16.83798 -16.78712 -16.29432 -15.95348 -15.70468 -15.43720 -15.25220 -14.70991 -14.40145 -14.18574 -13.98933 -13.84399 -13.48292 -13.47407 -13.18621 -12.88148 -12.81044 -12.71777 -12.60431 -12.42860 -12.37853 -12.23229 -11.99324 -11.89408 -11.57405 -11.42959 -11.20870 -11.06573 -10.88696 -10.78160 -10.57031 -9.98620 -9.41081 -8.86475 -7.81031 -5.19978 0.74618 0.96530 1.45239 1.45854 1.55480 1.60892 1.64121 1.78341 2.25404 2.50016 3.32726 3.45902 3.54186 3.65980 3.85163 3.89532 3.98402 4.08006 4.12536 4.16463 4.34231 4.41280 4.44241 4.48268 4.61070 4.62792 4.71447 4.73651 4.80481 4.82906 4.97541 5.07084 5.15341 5.23759 5.33074 5.39163 5.46238 5.54758 5.75271 5.82921 5.89107 6.25526 6.53176 6.61373 7.04799 7.29536 7.68169 8.54034 9.26143 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.034609 B = 0.001927 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.842830 B =14529.597386 C =14774.338926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.065 4.065 3 Si 0.975 3.025 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.222 4.222 8 H 0.071 0.929 9 N -0.618 5.618 10 C 0.139 3.861 11 H 0.118 0.882 12 C -0.127 4.127 13 C -0.117 4.117 14 C 0.118 3.882 15 H 0.068 0.932 16 C 0.147 3.853 17 H 0.057 0.943 18 N -0.698 5.698 19 C 0.517 3.483 20 O -0.585 6.585 21 C -0.136 4.136 22 C 0.152 3.848 23 N -0.366 5.366 24 C 0.080 3.920 25 C -0.205 4.205 26 Cl -0.043 7.043 27 C 0.062 3.938 28 N -0.310 5.310 29 C -0.127 4.127 30 H 0.248 0.752 31 H 0.033 0.967 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.089 0.911 35 H 0.415 0.585 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.210 0.790 41 H 0.210 0.790 42 H 0.045 0.955 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 -26.487 -4.343 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.258 4.258 3 Si 0.804 3.196 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.351 4.351 8 H 0.089 0.911 9 N -0.340 5.340 10 C 0.033 3.967 11 H 0.135 0.865 12 C -0.166 4.166 13 C -0.156 4.156 14 C 0.010 3.990 15 H 0.086 0.914 16 C 0.040 3.960 17 H 0.075 0.925 18 N -0.349 5.349 19 C 0.304 3.696 20 O -0.465 6.465 21 C -0.177 4.177 22 C 0.031 3.969 23 N -0.148 5.148 24 C -0.068 4.068 25 C -0.243 4.243 26 Cl -0.015 7.015 27 C -0.125 4.125 28 N -0.131 5.131 29 C -0.167 4.167 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.253 0.747 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.105 0.895 39 H 0.140 0.860 40 H 0.227 0.773 41 H 0.227 0.773 42 H 0.064 0.936 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.463 -24.940 -3.897 25.246 hybrid contribution 0.306 0.498 -0.450 0.738 sum -0.157 -24.442 -4.347 24.826 Atomic orbital electron populations 1.69704 1.05846 1.24968 1.58823 1.25423 0.96590 1.00213 1.03589 0.85047 0.77895 0.79897 0.76722 1.19850 1.21920 1.21911 1.19327 0.90484 0.83570 1.41761 0.91068 1.46725 1.03036 0.99527 1.84744 1.23626 0.85890 0.95389 0.91828 0.86518 1.22960 0.97040 0.98016 0.98589 1.22827 0.96441 0.99356 0.97007 1.23324 0.95901 0.84685 0.95062 0.91411 1.22072 0.97024 0.79141 0.97806 0.92473 1.45985 1.23229 1.05357 1.60377 1.20817 0.82701 0.88987 0.77095 1.90729 1.28770 1.81637 1.45409 1.21766 1.00857 0.89168 1.05897 1.21536 0.98501 0.72367 1.04511 1.48639 1.53734 1.07680 1.04711 1.22790 0.99395 0.87696 0.96926 1.20917 1.21315 0.88722 0.93369 1.98331 1.97637 1.28168 1.77319 1.24301 0.98744 0.94285 0.95165 1.77464 1.23401 1.06734 1.05547 1.23129 0.95643 0.98223 0.99659 0.94185 0.94842 0.89397 0.94151 0.89273 0.74713 0.86074 0.86629 0.89517 0.86040 0.77343 0.77342 0.93604 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.53 10.48 21.65 0.23 -54.30 16 2 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 3 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.22 -12.48 10.59 84.03 0.89 -11.59 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 9 N -0.62 -30.79 2.99 -615.25 -1.84 -32.62 16 10 C 0.14 6.06 4.69 46.23 0.22 6.28 16 11 H 0.12 6.04 5.57 -2.39 -0.01 6.02 16 12 C -0.13 -4.50 6.44 32.21 0.21 -4.29 16 13 C -0.12 -3.92 6.31 32.21 0.20 -3.72 16 14 C 0.12 4.76 5.35 46.23 0.25 5.01 16 15 H 0.07 2.91 8.14 -2.39 -0.02 2.90 16 16 C 0.15 5.02 3.14 46.61 0.15 5.16 16 17 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16 18 N -0.70 -16.37 3.71 -434.90 -1.61 -17.98 16 19 C 0.52 12.08 7.83 87.66 0.69 12.76 16 20 O -0.59 -18.96 15.64 -3.03 -0.05 -19.01 16 21 C -0.14 -2.00 5.89 29.85 0.18 -1.83 16 22 C 0.15 2.30 5.80 86.38 0.50 2.80 16 23 N -0.37 -5.82 3.68 -347.93 -1.28 -7.10 16 24 C 0.08 1.05 11.43 83.54 0.95 2.01 16 25 C -0.20 -3.00 6.65 22.02 0.15 -2.85 16 26 Cl -0.04 -0.58 29.30 -2.72 -0.08 -0.66 16 27 C 0.06 0.94 12.02 85.25 1.02 1.97 16 28 N -0.31 -5.81 12.42 -56.97 -0.71 -6.51 16 29 C -0.13 -4.44 6.20 32.21 0.20 -4.24 16 30 H 0.25 13.96 8.31 -92.71 -0.77 13.18 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 2.37 7.81 -2.39 -0.02 2.35 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 2.28 6.40 -2.38 -0.02 2.27 16 35 H 0.42 6.94 7.92 -92.71 -0.73 6.20 16 36 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.09 1.57 8.10 -2.39 -0.02 1.55 16 39 H 0.12 1.53 8.03 -2.39 -0.02 1.51 16 40 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.21 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.10 2.54 7.38 -2.39 -0.02 2.52 16 Total: -1.00 -71.21 366.83 3.06 -68.14 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.31 Total: 17.72 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 6.07 Total: 4.27 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -5.21 Total: -118.52 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.05 Total: -19.01 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal Total: -71.21 3.06 -68.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110142680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.065 kcal (2) G-P(sol) polarization free energy of solvation -71.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds