Wall clock time and date at job start Tue Mar 31 2020 20:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99919 * 2 1 4 4 H 1.48497 * 109.46941 * 270.00005 * 3 2 1 5 5 H 1.48505 * 109.46872 * 29.99518 * 3 2 1 6 6 H 1.48493 * 109.47194 * 149.99637 * 3 2 1 7 7 C 1.38802 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00332 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72049 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00266 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47425 * 180.02562 * 14 13 11 16 16 N 1.46896 * 109.46853 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99855 * 179.97438 * 16 15 14 18 18 H 1.09003 * 110.26600 * 325.69901 * 17 16 15 19 19 C 1.54345 * 110.30589 * 203.62883 * 17 16 15 20 20 C 1.54350 * 102.39109 * 214.72378 * 19 17 16 21 21 C 1.51364 * 105.16922 * 26.34437 * 20 19 17 22 22 C 1.38388 * 109.79038 * 342.73315 * 21 20 19 23 23 C 1.38465 * 119.96111 * 180.02562 * 22 21 20 24 24 C 1.38159 * 120.26978 * 0.09307 * 23 22 21 25 25 C 1.38174 * 119.95833 * 359.97438 * 24 23 22 26 26 C 1.38671 * 130.40350 * 162.83744 * 21 20 19 27 27 F 1.35104 * 119.91834 * 359.96074 * 26 21 20 28 28 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 30 30 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 31 31 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.47212 * 300.00463 * 14 13 11 33 33 H 1.09000 * 109.46684 * 60.00307 * 14 13 11 34 34 H 1.09000 * 109.46497 * 300.00014 * 15 14 13 35 35 H 1.08987 * 109.47025 * 60.00130 * 15 14 13 36 36 H 1.00896 * 111.00253 * 303.95173 * 16 15 14 37 37 H 1.08997 * 110.81937 * 332.94428 * 19 17 16 38 38 H 1.08994 * 110.82371 * 96.49434 * 19 17 16 39 39 H 1.09004 * 110.30328 * 145.26720 * 20 19 17 40 40 H 1.08997 * 110.29990 * 267.32265 * 20 19 17 41 41 H 1.08006 * 119.86634 * 180.10716 * 23 22 21 42 42 H 1.07995 * 120.02088 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.04129 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7914 -5.5023 0.0056 13 7 2.8444 -6.3430 0.0022 14 6 2.3308 -7.7150 0.0024 15 6 3.5029 -8.6984 0.0036 16 7 2.9878 -10.0741 0.0031 17 6 4.0875 -11.0480 0.0037 18 1 4.9306 -10.6659 -0.5720 19 6 3.6096 -12.3959 -0.5769 20 6 4.4095 -13.4184 0.2580 21 6 4.6998 -12.7190 1.5686 22 6 4.5166 -11.3551 1.4225 23 6 4.7272 -10.5099 2.4988 24 6 5.1221 -11.0221 3.7197 25 6 5.3076 -12.3831 3.8696 26 6 5.0956 -13.2340 2.7938 27 9 5.2766 -14.5650 2.9386 28 1 -0.4850 0.8400 -0.0004 29 1 3.1240 -3.7309 0.8925 30 1 3.1253 -3.7317 -0.8875 31 1 3.8012 -6.1834 0.0032 32 1 1.7219 -7.8749 0.8922 33 1 1.7225 -7.8753 -0.8878 34 1 4.1121 -8.5386 -0.8860 35 1 4.1108 -8.5380 0.8939 36 1 2.3675 -10.2282 0.7839 37 1 2.5381 -12.5251 -0.4248 38 1 3.8644 -12.4747 -1.6338 39 1 3.8132 -14.3143 0.4314 40 1 5.3393 -13.6760 -0.2491 41 1 4.5820 -9.4459 2.3836 42 1 5.2848 -10.3592 4.5566 43 1 5.6158 -12.7850 4.8235 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:34 Heat of formation + Delta-G solvation = -60.182182 kcal Electronic energy + Delta-G solvation = -25041.001183 eV Core-core repulsion = 21126.200179 eV Total energy + Delta-G solvation = -3914.801004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.27683 -40.73539 -39.18315 -37.12250 -35.58471 -33.80362 -32.43533 -31.03165 -30.02974 -29.47027 -27.99692 -25.73769 -25.37821 -23.20349 -22.53836 -21.77832 -21.01226 -20.36991 -18.03214 -17.76706 -16.91952 -16.63013 -16.28805 -16.27548 -15.96907 -15.83014 -15.42414 -15.08251 -14.81074 -14.61813 -14.32420 -14.08802 -13.82294 -13.49755 -13.29460 -13.08570 -12.85809 -12.60634 -12.56778 -12.23561 -12.10989 -11.97042 -11.68460 -11.54626 -11.48939 -11.30481 -11.07026 -11.03167 -10.76906 -9.82501 -9.46028 -9.39868 -9.10146 -9.07846 -8.91795 -8.81102 -8.24334 -6.50781 -6.22267 -3.92950 0.63820 0.68347 2.92172 3.05168 3.08810 3.21761 3.25872 3.29839 3.54362 3.70211 3.86627 3.90472 4.11526 4.19704 4.38652 4.48692 4.52508 4.63063 4.72707 4.85400 4.89964 5.02743 5.03627 5.12841 5.16840 5.19559 5.23525 5.41303 5.44899 5.58965 5.62399 5.65727 5.70007 5.73684 5.82678 5.88071 5.91106 5.94234 6.12371 6.38773 6.46742 6.59668 6.88085 7.58791 7.67171 8.34473 8.59637 9.22970 10.85133 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026339 B = 0.001656 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.802173 B =16902.583139 C =17501.372426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.122 3.878 15 C 0.044 3.956 16 N -0.672 5.672 17 C 0.129 3.871 18 H 0.098 0.902 19 C -0.105 4.105 20 C -0.080 4.080 21 C -0.125 4.125 22 C -0.103 4.103 23 C -0.115 4.115 24 C -0.090 4.090 25 C -0.151 4.151 26 C 0.107 3.893 27 F -0.140 7.140 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.397 0.603 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.040 0.960 36 H 0.349 0.651 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.136 0.864 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.930 -28.123 3.448 31.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.389 6.389 13 N -0.395 5.395 14 C -0.002 4.002 15 C -0.085 4.085 16 N -0.302 5.302 17 C 0.019 3.981 18 H 0.116 0.884 19 C -0.143 4.143 20 C -0.118 4.118 21 C -0.127 4.127 22 C -0.105 4.105 23 C -0.134 4.134 24 C -0.108 4.108 25 C -0.170 4.170 26 C 0.088 3.912 27 F -0.119 7.119 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.231 0.769 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.168 0.832 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.146 0.854 42 H 0.154 0.846 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.645 -28.409 2.751 30.826 hybrid contribution 2.907 1.184 1.174 3.351 sum 14.552 -27.225 3.925 31.119 Atomic orbital electron populations 1.70014 1.05947 1.27469 1.46816 1.24996 0.95030 0.99032 0.94541 0.86167 0.79395 0.81574 0.78352 1.20266 1.20748 1.19715 1.22867 0.94907 0.91660 1.58990 0.90924 1.85415 1.04899 0.96317 1.96716 1.23531 1.06590 0.95353 1.04919 1.20295 0.86498 0.86225 0.75157 1.90710 1.15364 1.85565 1.47306 1.45895 1.09925 1.05425 1.78215 1.21138 0.95675 0.80359 1.03061 1.22251 0.96774 0.88050 1.01435 1.60493 1.17550 1.01730 1.50430 1.21223 0.93459 0.93495 0.89949 0.88370 1.22334 1.00962 0.91423 0.99588 1.21047 1.00981 0.98655 0.91096 1.20619 1.01910 0.95792 0.94373 1.21374 0.98877 0.93148 0.97126 1.20830 1.00322 1.00020 0.92180 1.20961 0.97903 0.94323 0.97585 1.21197 1.03608 0.93830 0.98359 1.17475 1.02463 0.77415 0.93839 1.91491 1.92930 1.31079 1.96381 0.92169 0.89238 0.89199 0.76932 0.91801 0.90591 0.90071 0.94222 0.83191 0.89747 0.89677 0.90229 0.89735 0.85432 0.84599 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 11 C 0.53 9.74 7.85 -10.98 -0.09 9.66 16 12 O -0.52 -11.67 15.86 5.56 0.09 -11.58 16 13 N -0.74 -9.30 5.56 -60.29 -0.33 -9.64 16 14 C 0.12 1.33 5.93 -4.04 -0.02 1.31 16 15 C 0.04 0.33 5.57 -3.83 -0.02 0.31 16 16 N -0.67 -4.82 6.26 -106.85 -0.67 -5.49 16 17 C 0.13 0.82 3.18 -67.83 -0.22 0.61 16 18 H 0.10 0.59 7.84 -51.93 -0.41 0.19 16 19 C -0.11 -0.59 6.77 -25.32 -0.17 -0.76 16 20 C -0.08 -0.48 6.76 -26.85 -0.18 -0.66 16 21 C -0.13 -0.98 6.13 -104.08 -0.64 -1.62 16 22 C -0.10 -0.75 5.51 -104.15 -0.57 -1.32 16 23 C -0.12 -0.81 9.71 -39.53 -0.38 -1.19 16 24 C -0.09 -0.59 10.04 -39.63 -0.40 -0.99 16 25 C -0.15 -1.09 10.04 -39.40 -0.40 -1.48 16 26 C 0.11 0.91 7.32 -39.22 -0.29 0.62 16 27 F -0.14 -1.30 17.26 2.25 0.04 -1.26 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 30 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 31 H 0.40 3.74 8.47 -40.82 -0.35 3.39 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 35 H 0.04 0.26 5.80 -51.94 -0.30 -0.04 16 36 H 0.35 2.54 8.47 -39.29 -0.33 2.21 16 37 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.13 0.79 5.98 -52.48 -0.31 0.48 16 42 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 43 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -34.56 377.51 -10.54 -45.09 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.89 Total: 1.35 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -2.96 Total: -11.24 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: -0.27 Total: -40.47 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.56 -10.54 -45.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.087 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds