Wall clock time and date at job start Tue Mar 31 2020 20:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99919 * 2 1 4 4 H 1.48497 * 109.46941 * 270.00005 * 3 2 1 5 5 H 1.48505 * 109.46872 * 29.99518 * 3 2 1 6 6 H 1.48493 * 109.47194 * 149.99637 * 3 2 1 7 7 C 1.38802 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00332 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72049 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00266 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47425 * 180.02562 * 14 13 11 16 16 N 1.46896 * 109.46853 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99855 * 179.97438 * 16 15 14 18 18 H 1.09003 * 110.26600 * 325.69901 * 17 16 15 19 19 C 1.54345 * 110.30589 * 203.62883 * 17 16 15 20 20 C 1.54350 * 102.39109 * 214.72378 * 19 17 16 21 21 C 1.51364 * 105.16922 * 26.34437 * 20 19 17 22 22 C 1.38388 * 109.79038 * 342.73315 * 21 20 19 23 23 C 1.38465 * 119.96111 * 180.02562 * 22 21 20 24 24 C 1.38159 * 120.26978 * 0.09307 * 23 22 21 25 25 C 1.38174 * 119.95833 * 359.97438 * 24 23 22 26 26 C 1.38671 * 130.40350 * 162.83744 * 21 20 19 27 27 F 1.35104 * 119.91834 * 359.96074 * 26 21 20 28 28 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 30 30 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 31 31 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.47212 * 300.00463 * 14 13 11 33 33 H 1.09000 * 109.46684 * 60.00307 * 14 13 11 34 34 H 1.09000 * 109.46497 * 300.00014 * 15 14 13 35 35 H 1.08987 * 109.47025 * 60.00130 * 15 14 13 36 36 H 1.00896 * 111.00253 * 303.95173 * 16 15 14 37 37 H 1.08997 * 110.81937 * 332.94428 * 19 17 16 38 38 H 1.08994 * 110.82371 * 96.49434 * 19 17 16 39 39 H 1.09004 * 110.30328 * 145.26720 * 20 19 17 40 40 H 1.08997 * 110.29990 * 267.32265 * 20 19 17 41 41 H 1.08006 * 119.86634 * 180.10716 * 23 22 21 42 42 H 1.07995 * 120.02088 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.04129 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7914 -5.5023 0.0056 13 7 2.8444 -6.3430 0.0022 14 6 2.3308 -7.7150 0.0024 15 6 3.5029 -8.6984 0.0036 16 7 2.9878 -10.0741 0.0031 17 6 4.0875 -11.0480 0.0037 18 1 4.9306 -10.6659 -0.5720 19 6 3.6096 -12.3959 -0.5769 20 6 4.4095 -13.4184 0.2580 21 6 4.6998 -12.7190 1.5686 22 6 4.5166 -11.3551 1.4225 23 6 4.7272 -10.5099 2.4988 24 6 5.1221 -11.0221 3.7197 25 6 5.3076 -12.3831 3.8696 26 6 5.0956 -13.2340 2.7938 27 9 5.2766 -14.5650 2.9386 28 1 -0.4850 0.8400 -0.0004 29 1 3.1240 -3.7309 0.8925 30 1 3.1253 -3.7317 -0.8875 31 1 3.8012 -6.1834 0.0032 32 1 1.7219 -7.8749 0.8922 33 1 1.7225 -7.8753 -0.8878 34 1 4.1121 -8.5386 -0.8860 35 1 4.1108 -8.5380 0.8939 36 1 2.3675 -10.2282 0.7839 37 1 2.5381 -12.5251 -0.4248 38 1 3.8644 -12.4747 -1.6338 39 1 3.8132 -14.3143 0.4314 40 1 5.3393 -13.6760 -0.2491 41 1 4.5820 -9.4459 2.3836 42 1 5.2848 -10.3592 4.5566 43 1 5.6158 -12.7850 4.8235 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123799176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:33 Heat of formation + Delta-G solvation = -83.603357 kcal Electronic energy + Delta-G solvation = -25042.016801 eV Core-core repulsion = 21126.200179 eV Total energy + Delta-G solvation = -3915.816622 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.91600 -41.25949 -40.56595 -37.75992 -36.39640 -34.74248 -34.56769 -31.85531 -31.03926 -30.08878 -28.90651 -27.64819 -26.29731 -23.72124 -23.28842 -22.30908 -21.81888 -21.46667 -19.83206 -18.52480 -17.82794 -17.48643 -17.23298 -17.08318 -16.86952 -16.83304 -16.64219 -16.19945 -16.10575 -15.68238 -15.22139 -14.99393 -14.79471 -14.68152 -14.35655 -14.05207 -13.77800 -13.61873 -13.38668 -13.15342 -13.09461 -12.88102 -12.76412 -12.61567 -12.50142 -12.41982 -12.18141 -12.10496 -11.79407 -11.70755 -11.13247 -10.97420 -10.25830 -10.12110 -9.94856 -9.65115 -9.35639 -8.65492 -8.33481 -6.11524 0.09302 0.15653 1.27928 1.43491 1.48128 1.58263 1.62978 2.20353 2.28972 2.51395 3.00674 3.15000 3.21928 3.34365 3.37945 3.53285 3.86692 3.91061 3.95898 4.05544 4.09123 4.22772 4.26218 4.33696 4.35342 4.50779 4.53186 4.56126 4.60810 4.72966 4.92004 4.94320 4.95311 5.00515 5.14979 5.20279 5.23657 5.33008 5.40494 5.43050 5.43868 5.86781 5.95163 6.21042 6.30116 6.52038 7.07847 7.26476 8.75676 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026339 B = 0.001656 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.802173 B =16902.583139 C =17501.372426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.534 3.466 12 O -0.567 6.567 13 N -0.710 5.710 14 C 0.124 3.876 15 C 0.057 3.943 16 N -0.677 5.677 17 C 0.133 3.867 18 H 0.107 0.893 19 C -0.101 4.101 20 C -0.079 4.079 21 C -0.138 4.138 22 C -0.108 4.108 23 C -0.120 4.120 24 C -0.093 4.093 25 C -0.156 4.156 26 C 0.083 3.917 27 F -0.151 7.151 28 H 0.271 0.729 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.418 0.582 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.348 0.652 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.138 0.862 42 H 0.156 0.844 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.635 -28.043 3.410 32.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.365 5.365 14 C 0.000 4.000 15 C -0.072 4.072 16 N -0.307 5.307 17 C 0.023 3.977 18 H 0.125 0.875 19 C -0.139 4.139 20 C -0.117 4.117 21 C -0.139 4.139 22 C -0.110 4.110 23 C -0.138 4.138 24 C -0.111 4.111 25 C -0.175 4.175 26 C 0.064 3.936 27 F -0.130 7.130 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.255 0.745 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.167 0.833 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.156 0.844 42 H 0.174 0.826 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 14.414 -28.373 2.711 31.939 hybrid contribution 2.106 1.016 1.203 2.630 sum 16.520 -27.357 3.915 32.197 Atomic orbital electron populations 1.70183 1.07987 1.28588 1.48035 1.26137 0.95964 1.03351 0.93787 0.84950 0.78215 0.76019 0.78771 1.19348 1.20400 1.18111 1.23210 0.95382 0.91960 1.58791 0.89791 1.85613 1.10717 0.99333 1.97058 1.23372 1.03486 0.94226 1.06941 1.20060 0.86191 0.86713 0.75108 1.90701 1.17569 1.86113 1.50124 1.45583 1.10364 1.04957 1.75614 1.21204 0.97056 0.79833 1.01902 1.22128 0.95147 0.87205 1.02754 1.60490 1.17940 1.01708 1.50530 1.21248 0.93352 0.93483 0.89614 0.87474 1.22321 1.00492 0.90876 1.00176 1.21084 1.01433 0.98617 0.90526 1.20866 1.01851 0.96430 0.94772 1.21517 0.98909 0.92948 0.97649 1.21042 0.99989 1.00546 0.92269 1.21242 0.97309 0.94327 0.98195 1.21436 1.03269 0.94140 0.98646 1.17786 1.03813 0.77247 0.94784 1.91458 1.93180 1.31829 1.96483 0.92024 0.87025 0.87073 0.74530 0.92637 0.92240 0.88893 0.92657 0.83314 0.90361 0.88431 0.90342 0.88863 0.84440 0.82599 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.81 13.22 21.65 0.29 -55.52 16 2 C 0.01 0.70 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.55 -30.82 9.50 67.96 0.65 -30.18 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 10 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 11 C 0.53 19.00 7.85 87.66 0.69 19.68 16 12 O -0.57 -26.03 15.86 -3.01 -0.05 -26.08 16 13 N -0.71 -16.21 5.56 -463.06 -2.57 -18.78 16 14 C 0.12 2.50 5.93 86.38 0.51 3.01 16 15 C 0.06 0.68 5.57 86.30 0.48 1.16 16 16 N -0.68 -8.33 6.26 -491.98 -3.08 -11.41 16 17 C 0.13 1.41 3.18 44.84 0.14 1.55 16 18 H 0.11 0.98 7.84 -2.39 -0.02 0.96 16 19 C -0.10 -0.97 6.77 31.51 0.21 -0.76 16 20 C -0.08 -0.87 6.76 30.52 0.21 -0.66 16 21 C -0.14 -2.02 6.13 -19.51 -0.12 -2.14 16 22 C -0.11 -1.39 5.51 -19.56 -0.11 -1.49 16 23 C -0.12 -1.44 9.71 22.31 0.22 -1.22 16 24 C -0.09 -1.06 10.04 22.24 0.22 -0.83 16 25 C -0.16 -2.09 10.04 22.39 0.22 -1.86 16 26 C 0.08 1.37 7.32 22.50 0.16 1.53 16 27 F -0.15 -2.82 17.26 44.97 0.78 -2.04 16 28 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 30 H 0.11 3.78 8.14 -2.39 -0.02 3.77 16 31 H 0.42 6.30 8.47 -92.71 -0.79 5.52 16 32 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 0.96 8.07 -2.39 -0.02 0.94 16 35 H 0.06 0.52 5.80 -2.39 -0.01 0.51 16 36 H 0.35 4.53 8.47 -89.70 -0.76 3.77 16 37 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.14 1.31 5.98 -2.91 -0.02 1.29 16 42 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 43 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -77.33 377.51 0.13 -77.20 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -0.49 Total: 16.64 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 4.40 Total: -15.54 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -5.37 Total: -85.71 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.05 Total: -26.08 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -77.33 0.13 -77.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.405 kcal (2) G-P(sol) polarization free energy of solvation -77.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds