Wall clock time and date at job start Tue Mar 31 2020 20:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99754 * 2 1 4 4 H 1.48503 * 109.47030 * 269.99928 * 3 2 1 5 5 H 1.48505 * 109.47098 * 29.99831 * 3 2 1 6 6 H 1.48494 * 109.47329 * 150.00177 * 3 2 1 7 7 C 1.37874 * 120.00486 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00086 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99657 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.46865 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97387 * 125.00160 * 10 9 7 12 12 C 1.35237 * 107.86532 * 179.69816 * 11 10 9 13 13 C 1.40426 * 107.86928 * 0.26441 * 12 11 10 14 14 N 1.40065 * 125.97639 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00069 * 0.02562 * 14 13 12 16 16 O 1.21552 * 120.00148 * 359.97438 * 15 14 13 17 17 C 1.47963 * 119.99813 * 179.97438 * 15 14 13 18 18 C 1.40402 * 119.72865 * 359.72802 * 17 15 14 19 19 C 1.36112 * 120.76451 * 179.71003 * 18 17 15 20 20 C 1.40002 * 119.86754 * 0.55954 * 19 18 17 21 21 C 1.41805 * 121.89142 * 179.70404 * 20 19 18 22 22 N 1.37845 * 120.89104 * 359.97438 * 21 20 19 23 23 N 1.32548 * 118.21469 * 180.02562 * 21 20 19 24 24 C 1.32387 * 121.50261 * 359.97438 * 23 21 20 25 25 N 1.31136 * 122.95305 * 0.02562 * 24 23 21 26 26 C 1.34184 * 120.49595 * 359.97438 * 25 24 23 27 27 C 1.38594 * 119.72227 * 179.97438 * 17 15 14 28 28 N 1.31233 * 108.04440 * 359.97438 * 13 12 11 29 29 H 0.96995 * 120.00465 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46938 * 60.00760 * 9 7 2 31 31 H 1.08998 * 109.47021 * 300.00189 * 9 7 2 32 32 H 1.08002 * 126.06889 * 359.96654 * 11 10 9 33 33 H 1.08003 * 126.06667 * 180.29843 * 12 11 10 34 34 H 0.97007 * 120.00120 * 179.97438 * 14 13 12 35 35 H 1.07998 * 119.61456 * 359.97250 * 18 17 15 36 36 H 1.07995 * 120.06256 * 180.25648 * 19 18 17 37 37 H 0.97002 * 119.99949 * 180.02562 * 22 21 20 38 38 H 0.96992 * 120.00306 * 0.03003 * 22 21 20 39 39 H 1.08000 * 118.52251 * 179.97438 * 24 23 21 40 40 H 1.07998 * 120.31734 * 0.02562 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6125 -0.0005 11 6 2.2422 -4.6223 0.8942 12 6 3.2566 -5.4462 0.5460 13 6 3.8661 -4.9173 -0.6032 14 7 4.9583 -5.4703 -1.2838 15 6 5.5180 -6.6143 -0.8430 16 8 5.0754 -7.1660 0.1455 17 6 6.6714 -7.1987 -1.5624 18 6 7.1744 -6.5598 -2.7069 19 6 8.2381 -7.0757 -3.3815 20 6 8.8341 -8.2632 -2.9403 21 6 9.9399 -8.8417 -3.6137 22 7 10.4722 -8.2493 -4.7388 23 7 10.4471 -9.9680 -3.1329 24 6 9.9451 -10.5475 -2.0537 25 7 8.9247 -10.0586 -1.3908 26 6 8.3344 -8.9218 -1.7908 27 6 7.2429 -8.3751 -1.1038 28 7 3.2335 -3.8143 -0.9278 29 1 -0.4850 0.8400 -0.0004 30 1 0.6242 -2.5567 -0.8904 31 1 0.6248 -2.5571 0.8897 32 1 1.5782 -4.7520 1.7361 33 1 3.5461 -6.3507 1.0602 34 1 5.3113 -5.0302 -2.0730 35 1 6.7147 -5.6461 -3.0536 36 1 8.6185 -6.5726 -4.2582 37 1 11.2285 -8.6564 -5.1896 38 1 10.0906 -7.4253 -5.0797 39 1 10.3957 -11.4645 -1.7039 40 1 6.8501 -8.8658 -0.2256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136891973.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:19 Heat of formation + Delta-G solvation = 100.394451 kcal Electronic energy + Delta-G solvation = -26680.460866 eV Core-core repulsion = 22689.391749 eV Total energy + Delta-G solvation = -3991.069117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.50980 -42.15874 -40.80180 -38.32921 -37.07539 -36.36746 -35.32791 -33.45485 -32.83743 -32.17502 -31.05001 -30.83721 -28.68249 -26.61801 -25.53644 -24.88770 -23.42465 -22.84449 -22.03782 -21.36082 -19.90280 -19.70469 -18.68921 -18.42231 -18.15282 -17.90362 -17.12861 -16.65020 -16.63034 -16.26449 -16.15487 -16.05997 -15.67927 -15.48575 -15.09152 -14.80359 -14.54714 -14.25843 -14.07081 -13.80997 -13.71170 -13.44463 -13.12255 -12.97007 -12.91599 -12.73175 -12.29438 -12.10427 -11.71124 -11.68239 -11.42052 -11.11279 -10.72045 -10.71179 -10.36351 -10.24791 -9.78535 -9.15579 -8.99133 -8.32503 -6.46418 -0.91124 -0.46913 0.75871 0.99133 1.24961 1.35729 1.39474 1.40493 1.51725 1.92345 2.21015 2.22851 2.37235 2.38573 2.99517 3.04802 3.12901 3.17952 3.40484 3.46792 3.73519 3.91872 3.97639 4.11593 4.24834 4.30149 4.60663 4.65937 4.77365 4.88678 4.92265 4.95006 5.00951 5.04164 5.14929 5.28026 5.41474 5.57231 5.79903 5.83876 5.86570 6.07458 6.17234 6.27187 6.64795 6.65959 6.87251 7.03388 7.23481 7.29501 8.75222 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.002031 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.427422 B =13782.628504 C =14779.155488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.271 3.729 10 N -0.342 5.342 11 C 0.058 3.942 12 C -0.295 4.295 13 C 0.264 3.736 14 N -0.613 5.613 15 C 0.564 3.436 16 O -0.537 6.537 17 C -0.083 4.083 18 C -0.112 4.112 19 C -0.052 4.052 20 C -0.190 4.190 21 C 0.476 3.524 22 N -0.793 5.793 23 N -0.613 5.613 24 C 0.347 3.653 25 N -0.579 5.579 26 C 0.160 3.840 27 C -0.056 4.056 28 N -0.339 5.339 29 H 0.272 0.728 30 H 0.023 0.977 31 H 0.059 0.941 32 H 0.202 0.798 33 H 0.167 0.833 34 H 0.426 0.574 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.423 0.577 38 H 0.428 0.572 39 H 0.222 0.778 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.469 -16.499 -11.046 29.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.072 0.928 9 C 0.153 3.847 10 N -0.124 5.124 11 C -0.091 4.091 12 C -0.326 4.326 13 C 0.010 3.990 14 N -0.263 5.263 15 C 0.352 3.648 16 O -0.413 6.413 17 C -0.089 4.089 18 C -0.131 4.131 19 C -0.072 4.072 20 C -0.199 4.199 21 C 0.216 3.784 22 N -0.339 5.339 23 N -0.342 5.342 24 C 0.057 3.943 25 N -0.299 5.299 26 C 0.036 3.964 27 C -0.076 4.076 28 N -0.170 5.170 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.219 0.781 33 H 0.184 0.816 34 H 0.266 0.734 35 H 0.179 0.821 36 H 0.197 0.803 37 H 0.256 0.744 38 H 0.263 0.737 39 H 0.238 0.762 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 21.148 -16.531 -10.755 28.917 hybrid contribution -0.132 1.206 -0.068 1.215 sum 21.016 -15.325 -10.822 28.172 Atomic orbital electron populations 1.69992 1.07211 1.28763 1.49947 1.25746 0.95850 1.02751 0.93938 0.85340 0.78331 0.78109 0.78589 1.19658 1.19869 1.19744 1.21392 0.93406 0.90886 1.52779 0.92832 1.19372 0.85658 0.81466 0.98229 1.48867 1.23665 1.20305 1.19531 1.23169 1.00415 0.88775 0.96695 1.21734 1.02400 1.06553 1.01897 1.19338 0.91685 0.93366 0.94642 1.42308 1.28897 1.24476 1.30607 1.18614 0.82971 0.79299 0.83880 1.90715 1.62947 1.60996 1.26653 1.19626 0.95516 0.96355 0.97423 1.21197 0.97267 1.01028 0.93566 1.21009 0.93869 0.92505 0.99776 1.19285 1.00482 1.00435 0.99708 1.18829 0.85852 0.87458 0.86233 1.42159 1.36983 1.28922 1.25789 1.68032 1.35585 1.12117 1.18437 1.25152 0.86919 0.97482 0.84718 1.68812 1.13633 1.13184 1.34300 1.18690 0.94298 0.91431 0.91971 1.21011 0.93340 0.93877 0.99372 1.77249 1.04597 1.17684 1.17442 0.91857 0.95863 0.92339 0.78125 0.81569 0.73443 0.82068 0.80270 0.74372 0.73726 0.76186 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.60 13.29 21.45 0.28 -51.31 16 2 C 0.02 0.96 5.46 84.65 0.46 1.42 16 3 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.55 -30.37 9.23 25.60 0.24 -30.13 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.27 13.88 6.26 85.64 0.54 14.42 16 10 N -0.34 -15.81 3.67 -351.84 -1.29 -17.10 16 11 C 0.06 2.27 11.43 83.52 0.95 3.22 16 12 C -0.29 -11.48 9.60 22.11 0.21 -11.27 16 13 C 0.26 10.32 8.11 133.36 1.08 11.40 16 14 N -0.61 -17.96 5.39 -310.03 -1.67 -19.63 16 15 C 0.56 16.19 7.74 86.82 0.67 16.86 16 16 O -0.54 -18.98 13.43 -3.88 -0.05 -19.03 16 17 C -0.08 -1.81 5.87 -20.09 -0.12 -1.92 16 18 C -0.11 -1.53 9.45 22.30 0.21 -1.32 16 19 C -0.05 -0.52 9.51 22.20 0.21 -0.31 16 20 C -0.19 -3.00 5.76 -21.14 -0.12 -3.12 16 21 C 0.48 6.20 7.87 134.08 1.06 7.26 16 22 N -0.79 -2.76 8.98 -54.34 -0.49 -3.25 16 23 N -0.61 -9.99 10.43 -196.67 -2.05 -12.04 16 24 C 0.35 6.06 12.22 180.90 2.21 8.27 16 25 N -0.58 -13.15 10.44 -193.99 -2.03 -15.17 16 26 C 0.16 3.55 6.61 40.06 0.26 3.81 16 27 C -0.06 -1.33 9.58 22.80 0.22 -1.11 16 28 N -0.34 -15.35 12.42 -54.49 -0.68 -16.02 16 29 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.02 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.06 2.93 8.07 -2.39 -0.02 2.91 16 32 H 0.20 6.20 8.06 -2.91 -0.02 6.17 16 33 H 0.17 6.30 5.91 -2.91 -0.02 6.28 16 34 H 0.43 9.40 6.81 -92.70 -0.63 8.77 16 35 H 0.16 1.36 6.34 -2.91 -0.02 1.35 16 36 H 0.18 0.06 6.55 -2.91 -0.02 0.04 16 37 H 0.42 0.39 8.95 -92.71 -0.83 -0.44 16 38 H 0.43 -0.99 7.06 -92.71 -0.65 -1.64 16 39 H 0.22 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.14 3.68 7.62 -2.91 -0.02 3.66 16 Total: -1.00 -78.14 351.30 1.19 -76.95 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -0.95 Total: 14.14 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 8.09 Total: 17.49 kcal Atomic # 7 Polarization: -126.61 SS G_CDS: -7.92 Total: -134.53 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.05 Total: -19.03 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -78.14 1.19 -76.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136891973.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.347 kcal (2) G-P(sol) polarization free energy of solvation -78.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds