Wall clock time and date at job start Tue Mar 31 2020 20:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86800 * 120.00276 * 2 1 4 4 H 1.48489 * 109.47189 * 270.00495 * 3 2 1 5 5 H 1.48505 * 109.46817 * 30.00595 * 3 2 1 6 6 H 1.48499 * 109.46841 * 150.00236 * 3 2 1 7 7 C 1.40138 * 119.99527 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99710 * 179.97438 * 7 2 1 9 9 C 1.46156 * 120.00032 * 359.97438 * 7 2 1 10 10 O 1.21728 * 120.00553 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00198 * 180.02562 * 9 7 2 12 12 C 1.38728 * 120.00211 * 179.97438 * 11 9 7 13 13 N 1.31826 * 119.79140 * 5.35146 * 12 11 9 14 14 C 1.33892 * 119.76058 * 179.97438 * 13 12 11 15 15 C 1.40539 * 120.89646 * 180.02562 * 14 13 12 16 16 C 1.36144 * 119.74594 * 179.97438 * 15 14 13 17 17 C 1.39328 * 120.92513 * 0.04501 * 16 15 14 18 18 C 1.36159 * 120.94388 * 359.95076 * 17 16 15 19 19 C 1.40484 * 119.75616 * 0.02599 * 18 17 16 20 20 N 1.33939 * 120.90528 * 180.29602 * 19 18 17 21 21 C 1.31627 * 119.80440 * 180.22544 * 20 19 18 22 22 N 1.39535 * 119.77701 * 179.77441 * 21 20 19 23 23 N 1.40099 * 126.10053 * 227.41674 * 22 21 20 24 24 C 1.30811 * 108.25234 * 179.97438 * 23 22 21 25 25 C 1.39984 * 108.37885 * 0.02562 * 24 23 22 26 26 C 1.35270 * 107.96764 * 359.97438 * 25 24 23 27 27 C 1.50691 * 126.19535 * 179.97438 * 26 25 24 28 28 N 1.46905 * 109.47397 * 95.02031 * 27 26 25 29 29 H 0.97004 * 119.99657 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99415 * 359.97438 * 11 9 7 31 31 H 1.08000 * 120.12692 * 359.94987 * 15 14 13 32 32 H 1.07998 * 119.53830 * 180.02562 * 16 15 14 33 33 H 1.08005 * 119.52541 * 179.97438 * 17 16 15 34 34 H 1.07997 * 120.12374 * 180.02562 * 18 17 16 35 35 H 1.08001 * 125.81023 * 179.97438 * 24 23 22 36 36 H 1.07993 * 126.01914 * 179.73330 * 25 24 23 37 37 H 1.08996 * 109.47576 * 215.02149 * 27 26 25 38 38 H 1.09005 * 109.47253 * 335.02358 * 27 26 25 39 39 H 1.00897 * 111.00409 * 179.97438 * 28 27 26 40 40 H 1.00904 * 110.99684 * 303.96241 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4879 2.0464 -1.4000 5 1 1.4379 2.6526 0.7002 6 1 3.5380 1.4400 0.7000 7 6 2.0070 -1.2137 -0.0005 8 1 3.0869 -1.2137 -0.0010 9 6 1.2761 -2.4794 -0.0005 10 8 0.0588 -2.4794 -0.0005 11 7 1.9498 -3.6467 -0.0005 12 6 1.2561 -4.8480 0.0000 13 7 -0.0579 -4.8457 -0.1062 14 6 -0.7267 -6.0055 -0.1061 15 6 -2.1274 -6.0308 -0.2186 16 6 -2.7838 -7.2236 -0.2165 17 6 -2.0864 -8.4245 -0.1033 18 6 -0.7294 -8.4383 0.0074 19 6 -0.0176 -7.2271 0.0085 20 7 1.3179 -7.2141 0.1102 21 6 1.9627 -6.0666 0.1134 22 7 3.3536 -6.0536 0.2242 23 7 4.1054 -5.2456 1.0871 24 6 5.3717 -5.5178 0.9039 25 6 5.4724 -6.5070 -0.0814 26 6 4.2206 -6.8223 -0.4857 27 6 3.8541 -7.8409 -1.5340 28 7 3.5494 -9.1233 -0.8854 29 1 -0.4850 0.8401 0.0004 30 1 2.9199 -3.6467 -0.0009 31 1 -2.6810 -5.1076 -0.3059 32 1 -3.8601 -7.2392 -0.3035 33 1 -2.6300 -9.3577 -0.1037 34 1 -0.2022 -9.3768 0.0940 35 1 6.1987 -5.0571 1.4236 36 1 6.3884 -6.9394 -0.4560 37 1 2.9796 -7.4960 -2.0857 38 1 4.6896 -7.9712 -2.2219 39 1 3.3001 -9.8235 -1.5678 40 1 4.3222 -9.4327 -0.3151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162590860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:01 Heat of formation + Delta-G solvation = 143.553812 kcal Electronic energy + Delta-G solvation = -28796.203935 eV Core-core repulsion = 24807.006349 eV Total energy + Delta-G solvation = -3989.197587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.70896 -40.65385 -38.18090 -36.76794 -35.03220 -34.44569 -33.58012 -32.58923 -32.03417 -30.04119 -29.80089 -28.93736 -26.61207 -25.25700 -24.61440 -23.63270 -22.01075 -21.31562 -20.57904 -20.13932 -18.63844 -18.16226 -17.34322 -16.67581 -16.08354 -15.81228 -15.44723 -15.17810 -15.03283 -14.85495 -14.41412 -14.17376 -14.05024 -13.91479 -13.61491 -13.49539 -13.37517 -13.02871 -12.57547 -11.88379 -11.77152 -11.67117 -11.54003 -11.35696 -11.30756 -10.99803 -10.97037 -10.72215 -10.64025 -10.33560 -9.81555 -9.42777 -9.02349 -8.92872 -8.78582 -8.69119 -8.17515 -7.58329 -7.35810 -6.35068 -4.83475 0.43185 0.96190 1.76400 2.18367 2.39957 2.77572 3.04459 3.12340 3.13708 3.17812 3.76212 4.09497 4.25464 4.28580 4.41372 4.50655 4.58877 4.65523 4.85032 4.89598 4.97569 5.09169 5.23680 5.36003 5.43433 5.55766 5.59345 5.65210 5.67011 5.82650 6.01938 6.19986 6.31066 6.45588 6.59189 6.60539 6.87727 6.91101 7.02563 7.26105 7.27753 7.33121 7.54816 7.71857 7.81872 8.02302 8.29513 8.82030 9.11716 10.36346 10.54497 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009580 B = 0.004749 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.174252 B = 5894.747261 C = 8547.394140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.086 3.914 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.532 4.532 8 H 0.073 0.927 9 C 0.525 3.475 10 O -0.507 6.507 11 N -0.644 5.644 12 C 0.384 3.616 13 N -0.422 5.422 14 C 0.130 3.870 15 C -0.092 4.092 16 C -0.094 4.094 17 C -0.133 4.133 18 C -0.060 4.060 19 C 0.035 3.965 20 N -0.380 5.380 21 C 0.286 3.714 22 N -0.306 5.306 23 N -0.275 5.275 24 C 0.059 3.941 25 C -0.265 4.265 26 C 0.108 3.892 27 C 0.131 3.869 28 N -0.827 5.827 29 H 0.273 0.727 30 H 0.405 0.595 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.192 0.808 36 H 0.151 0.849 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.344 0.656 40 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.140 -16.941 -2.918 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.091 0.909 9 C 0.330 3.670 10 O -0.382 6.382 11 N -0.288 5.288 12 C 0.131 3.869 13 N -0.146 5.146 14 C 0.001 3.999 15 C -0.112 4.112 16 C -0.115 4.115 17 C -0.153 4.153 18 C -0.079 4.079 19 C -0.092 4.092 20 N -0.096 5.096 21 C 0.035 3.965 22 N -0.085 5.085 23 N -0.094 5.094 24 C -0.129 4.129 25 C -0.295 4.295 26 C -0.018 4.018 27 C -0.001 4.001 28 N -0.358 5.358 29 H 0.084 0.916 30 H 0.243 0.757 31 H 0.158 0.842 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.209 0.791 36 H 0.169 0.831 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.158 0.842 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.402 -15.605 -1.943 16.089 hybrid contribution 2.530 -0.060 -0.835 2.665 sum 5.933 -15.664 -2.778 16.979 Atomic orbital electron populations 1.69985 1.07142 1.27938 1.33379 1.25733 0.94748 1.00482 0.92603 0.86237 0.80163 0.80684 0.79006 1.19538 1.20198 1.18648 1.20809 0.93824 0.88550 1.53562 0.90917 1.18682 0.88030 0.81537 0.78717 1.90745 1.12811 1.84543 1.50068 1.44874 1.10473 1.03303 1.70178 1.19742 0.89286 0.86709 0.91172 1.69394 1.04045 1.24761 1.16394 1.19813 0.95712 0.88434 0.95903 1.20824 0.91371 0.99223 0.99751 1.20914 1.00224 0.91940 0.98374 1.20779 0.93855 0.98265 1.02429 1.20621 0.93607 0.96012 0.97703 1.19228 0.88073 0.94751 1.07146 1.67990 1.08161 1.25714 1.07697 1.18453 0.81838 0.90171 1.05997 1.45458 1.02360 1.30874 1.29829 1.77661 1.04052 1.15535 1.12196 1.24056 0.94507 0.96894 0.97431 1.21248 0.96542 1.06159 1.05547 1.21244 0.89505 0.94856 0.96152 1.20169 1.00332 0.88027 0.91581 1.58447 1.45658 1.04042 1.27682 0.91604 0.75748 0.84220 0.85302 0.85464 0.84868 0.79142 0.83092 0.90198 0.92927 0.84213 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.19 11.82 55.56 0.66 -21.53 16 2 C 0.09 2.34 5.50 -17.35 -0.10 2.25 16 3 Si 0.92 19.73 29.56 -169.99 -5.02 14.71 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 7 C -0.53 -14.92 9.53 -35.69 -0.34 -15.26 16 8 H 0.07 1.87 7.85 -52.49 -0.41 1.45 16 9 C 0.53 15.30 7.70 -13.08 -0.10 15.20 16 10 O -0.51 -16.39 13.27 5.16 0.07 -16.32 16 11 N -0.64 -15.99 5.23 -12.46 -0.07 -16.05 16 12 C 0.38 9.08 7.43 -154.94 -1.15 7.93 16 13 N -0.42 -10.38 7.97 -9.85 -0.08 -10.46 16 14 C 0.13 2.65 6.59 -84.77 -0.56 2.09 16 15 C -0.09 -1.57 9.98 -39.47 -0.39 -1.96 16 16 C -0.09 -1.22 9.95 -39.93 -0.40 -1.61 16 17 C -0.13 -1.57 9.95 -39.92 -0.40 -1.97 16 18 C -0.06 -0.84 9.98 -39.48 -0.39 -1.23 16 19 C 0.04 0.64 6.59 -84.77 -0.56 0.08 16 20 N -0.38 -7.07 9.87 -9.70 -0.10 -7.17 16 21 C 0.29 5.79 6.84 -154.31 -1.06 4.73 16 22 N -0.31 -5.46 3.36 -8.00 -0.03 -5.49 16 23 N -0.28 -4.87 10.74 30.64 0.33 -4.54 16 24 C 0.06 0.78 12.02 -17.33 -0.21 0.57 16 25 C -0.26 -3.16 10.72 -39.99 -0.43 -3.59 16 26 C 0.11 1.54 6.40 -81.86 -0.52 1.01 16 27 C 0.13 1.49 6.52 -4.98 -0.03 1.46 16 28 N -0.83 -8.29 9.61 -11.41 -0.11 -8.40 16 29 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 30 H 0.41 9.18 6.59 -40.82 -0.27 8.91 16 31 H 0.14 2.44 8.06 -52.49 -0.42 2.02 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.19 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.08 1.06 7.99 -51.93 -0.41 0.65 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.34 2.63 9.08 -39.29 -0.36 2.27 16 40 H 0.34 2.99 8.99 -39.29 -0.35 2.64 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -36.77 353.73 -9.55 -46.32 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -3.90 Total: 13.92 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: -6.64 Total: 9.68 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: 0.61 Total: -73.64 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.07 Total: -16.32 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.77 -9.55 -46.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162590860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.874 kcal (2) G-P(sol) polarization free energy of solvation -36.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds