Wall clock time and date at job start Tue Mar 31 2020 20:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86800 * 120.00276 * 2 1 4 4 H 1.48489 * 109.47189 * 270.00495 * 3 2 1 5 5 H 1.48505 * 109.46817 * 30.00595 * 3 2 1 6 6 H 1.48499 * 109.46841 * 150.00236 * 3 2 1 7 7 C 1.40138 * 119.99527 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99710 * 179.97438 * 7 2 1 9 9 C 1.46156 * 120.00032 * 359.97438 * 7 2 1 10 10 O 1.21728 * 120.00553 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00198 * 180.02562 * 9 7 2 12 12 C 1.38728 * 120.00211 * 179.97438 * 11 9 7 13 13 N 1.31826 * 119.79140 * 5.35146 * 12 11 9 14 14 C 1.33892 * 119.76058 * 179.97438 * 13 12 11 15 15 C 1.40539 * 120.89646 * 180.02562 * 14 13 12 16 16 C 1.36144 * 119.74594 * 179.97438 * 15 14 13 17 17 C 1.39328 * 120.92513 * 0.04501 * 16 15 14 18 18 C 1.36159 * 120.94388 * 359.95076 * 17 16 15 19 19 C 1.40484 * 119.75616 * 0.02599 * 18 17 16 20 20 N 1.33939 * 120.90528 * 180.29602 * 19 18 17 21 21 C 1.31627 * 119.80440 * 180.22544 * 20 19 18 22 22 N 1.39535 * 119.77701 * 179.77441 * 21 20 19 23 23 N 1.40099 * 126.10053 * 227.41674 * 22 21 20 24 24 C 1.30811 * 108.25234 * 179.97438 * 23 22 21 25 25 C 1.39984 * 108.37885 * 0.02562 * 24 23 22 26 26 C 1.35270 * 107.96764 * 359.97438 * 25 24 23 27 27 C 1.50691 * 126.19535 * 179.97438 * 26 25 24 28 28 N 1.46905 * 109.47397 * 95.02031 * 27 26 25 29 29 H 0.97004 * 119.99657 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99415 * 359.97438 * 11 9 7 31 31 H 1.08000 * 120.12692 * 359.94987 * 15 14 13 32 32 H 1.07998 * 119.53830 * 180.02562 * 16 15 14 33 33 H 1.08005 * 119.52541 * 179.97438 * 17 16 15 34 34 H 1.07997 * 120.12374 * 180.02562 * 18 17 16 35 35 H 1.08001 * 125.81023 * 179.97438 * 24 23 22 36 36 H 1.07993 * 126.01914 * 179.73330 * 25 24 23 37 37 H 1.08996 * 109.47576 * 215.02149 * 27 26 25 38 38 H 1.09005 * 109.47253 * 335.02358 * 27 26 25 39 39 H 1.00897 * 111.00409 * 179.97438 * 28 27 26 40 40 H 1.00904 * 110.99684 * 303.96241 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4879 2.0464 -1.4000 5 1 1.4379 2.6526 0.7002 6 1 3.5380 1.4400 0.7000 7 6 2.0070 -1.2137 -0.0005 8 1 3.0869 -1.2137 -0.0010 9 6 1.2761 -2.4794 -0.0005 10 8 0.0588 -2.4794 -0.0005 11 7 1.9498 -3.6467 -0.0005 12 6 1.2561 -4.8480 0.0000 13 7 -0.0579 -4.8457 -0.1062 14 6 -0.7267 -6.0055 -0.1061 15 6 -2.1274 -6.0308 -0.2186 16 6 -2.7838 -7.2236 -0.2165 17 6 -2.0864 -8.4245 -0.1033 18 6 -0.7294 -8.4383 0.0074 19 6 -0.0176 -7.2271 0.0085 20 7 1.3179 -7.2141 0.1102 21 6 1.9627 -6.0666 0.1134 22 7 3.3536 -6.0536 0.2242 23 7 4.1054 -5.2456 1.0871 24 6 5.3717 -5.5178 0.9039 25 6 5.4724 -6.5070 -0.0814 26 6 4.2206 -6.8223 -0.4857 27 6 3.8541 -7.8409 -1.5340 28 7 3.5494 -9.1233 -0.8854 29 1 -0.4850 0.8401 0.0004 30 1 2.9199 -3.6467 -0.0009 31 1 -2.6810 -5.1076 -0.3059 32 1 -3.8601 -7.2392 -0.3035 33 1 -2.6300 -9.3577 -0.1037 34 1 -0.2022 -9.3768 0.0940 35 1 6.1987 -5.0571 1.4236 36 1 6.3884 -6.9394 -0.4560 37 1 2.9796 -7.4960 -2.0857 38 1 4.6896 -7.9712 -2.2219 39 1 3.3001 -9.8235 -1.5678 40 1 4.3222 -9.4327 -0.3151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162590860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:00 Heat of formation + Delta-G solvation = 114.798066 kcal Electronic energy + Delta-G solvation = -28797.450878 eV Core-core repulsion = 24807.006349 eV Total energy + Delta-G solvation = -3990.444530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.99237 -41.94521 -39.95746 -38.27607 -36.26105 -35.72686 -35.22805 -34.62832 -33.47087 -31.15165 -31.06779 -30.29431 -28.62801 -26.43315 -25.83697 -25.09065 -23.31866 -22.55230 -22.17566 -21.50634 -20.26162 -19.48121 -18.71729 -18.44911 -17.50532 -17.23824 -17.06281 -16.48816 -16.37861 -15.92404 -15.82596 -15.41585 -15.26852 -15.17162 -14.88876 -14.85194 -14.58856 -14.45842 -14.30386 -13.32882 -13.14029 -12.91250 -12.87499 -12.84170 -12.79373 -12.69271 -12.65144 -12.48785 -12.05004 -11.78445 -11.17359 -11.00917 -10.87884 -10.54697 -9.97846 -9.65075 -9.51850 -9.37313 -8.98113 -8.41283 -7.03092 -0.90242 -0.48101 0.64837 0.91255 1.07987 1.35801 1.37847 1.54302 1.77498 1.79280 2.07552 2.33082 2.39532 2.93350 3.00975 3.11289 3.37835 3.51516 3.53284 3.68880 3.83506 4.02931 4.04889 4.10856 4.23992 4.42306 4.48815 4.59178 4.61451 4.75421 4.96839 5.08521 5.15483 5.17398 5.19286 5.41045 5.49390 5.55988 5.70081 5.78109 5.94872 6.03363 6.18792 6.19755 6.57040 6.65374 6.67704 6.71281 7.20062 8.25605 8.50480 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009580 B = 0.004749 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.174252 B = 5894.747261 C = 8547.394140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.030 3.970 3 Si 1.006 2.994 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.247 1.247 7 C -0.560 4.560 8 H 0.089 0.911 9 C 0.513 3.487 10 O -0.557 6.557 11 N -0.648 5.648 12 C 0.348 3.652 13 N -0.471 5.471 14 C 0.091 3.909 15 C -0.128 4.128 16 C -0.062 4.062 17 C -0.102 4.102 18 C -0.063 4.063 19 C 0.029 3.971 20 N -0.370 5.370 21 C 0.285 3.715 22 N -0.326 5.326 23 N -0.335 5.335 24 C 0.068 3.932 25 C -0.247 4.247 26 C 0.091 3.909 27 C 0.136 3.864 28 N -0.836 5.836 29 H 0.280 0.720 30 H 0.412 0.588 31 H 0.120 0.880 32 H 0.174 0.826 33 H 0.185 0.815 34 H 0.162 0.838 35 H 0.229 0.771 36 H 0.194 0.806 37 H 0.052 0.948 38 H 0.087 0.913 39 H 0.358 0.642 40 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.469 -19.828 -3.244 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.187 4.187 3 Si 0.824 3.176 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.171 1.171 7 C -0.596 4.596 8 H 0.107 0.893 9 C 0.318 3.682 10 O -0.437 6.437 11 N -0.294 5.294 12 C 0.096 3.904 13 N -0.195 5.195 14 C -0.036 4.036 15 C -0.148 4.148 16 C -0.081 4.081 17 C -0.122 4.122 18 C -0.083 4.083 19 C -0.098 4.098 20 N -0.086 5.086 21 C 0.035 3.965 22 N -0.106 5.106 23 N -0.154 5.154 24 C -0.119 4.119 25 C -0.276 4.276 26 C -0.033 4.033 27 C 0.004 3.996 28 N -0.370 5.370 29 H 0.090 0.910 30 H 0.250 0.750 31 H 0.138 0.862 32 H 0.191 0.809 33 H 0.202 0.798 34 H 0.179 0.821 35 H 0.245 0.755 36 H 0.212 0.788 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.173 0.827 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.768 -18.595 -2.281 19.332 hybrid contribution 1.981 0.516 -0.739 2.176 sum 6.749 -18.079 -3.020 19.533 Atomic orbital electron populations 1.70152 1.09630 1.29617 1.34463 1.27061 0.95649 1.04970 0.91001 0.84894 0.78731 0.74222 0.79726 1.18182 1.19306 1.17055 1.21327 0.94802 0.89139 1.54302 0.89250 1.19077 0.87792 0.83161 0.78124 1.90683 1.14646 1.85922 1.52430 1.44254 1.10456 1.03137 1.71603 1.19911 0.89651 0.87403 0.93442 1.69152 1.05405 1.28024 1.16928 1.20282 0.97046 0.88318 0.97930 1.20923 0.90303 1.00682 1.02880 1.21461 1.02335 0.90450 0.93901 1.21430 0.93011 0.99814 0.97982 1.21031 0.94681 0.95140 0.97419 1.19809 0.88247 0.95546 1.06239 1.68166 1.08295 1.24456 1.07636 1.18284 0.83287 0.89148 1.05773 1.45432 1.01471 1.32409 1.31293 1.77630 1.06033 1.17423 1.14329 1.24830 0.93919 0.96223 0.96919 1.21737 0.97048 1.04792 1.04047 1.21971 0.89813 0.95113 0.96400 1.20163 1.00418 0.87917 0.91100 1.58353 1.46345 1.03888 1.28397 0.90980 0.74991 0.86228 0.80872 0.79804 0.82066 0.75494 0.78848 0.92902 0.89523 0.82683 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -50.27 11.82 21.85 0.26 -50.01 16 2 C 0.03 1.68 5.50 85.33 0.47 2.15 16 3 Si 1.01 41.36 29.56 68.60 2.03 43.39 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 5 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 6 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 7 C -0.56 -33.23 9.53 24.79 0.24 -33.00 16 8 H 0.09 4.78 7.85 -2.91 -0.02 4.76 16 9 C 0.51 32.43 7.70 86.30 0.66 33.09 16 10 O -0.56 -39.41 13.27 -4.44 -0.06 -39.47 16 11 N -0.65 -35.18 5.23 -311.52 -1.63 -36.81 16 12 C 0.35 17.99 7.43 133.87 1.00 18.98 16 13 N -0.47 -25.49 7.97 -185.09 -1.47 -26.97 16 14 C 0.09 3.96 6.59 40.25 0.27 4.22 16 15 C -0.13 -4.55 9.98 22.34 0.22 -4.33 16 16 C -0.06 -1.41 9.95 22.04 0.22 -1.19 16 17 C -0.10 -1.93 9.95 22.05 0.22 -1.71 16 18 C -0.06 -1.59 9.98 22.33 0.22 -1.37 16 19 C 0.03 1.06 6.59 40.23 0.27 1.33 16 20 N -0.37 -14.14 9.87 -184.59 -1.82 -15.97 16 21 C 0.28 12.26 6.84 133.65 0.91 13.17 16 22 N -0.33 -12.06 3.36 -179.23 -0.60 -12.66 16 23 N -0.33 -12.22 10.74 -56.96 -0.61 -12.83 16 24 C 0.07 1.72 12.02 85.27 1.02 2.74 16 25 C -0.25 -5.31 10.72 22.01 0.24 -5.07 16 26 C 0.09 2.52 6.40 41.24 0.26 2.78 16 27 C 0.14 2.93 6.52 85.55 0.56 3.49 16 28 N -0.84 -15.19 9.61 -190.01 -1.83 -17.02 16 29 H 0.28 15.60 8.29 -92.71 -0.77 14.83 16 30 H 0.41 20.30 6.59 -92.71 -0.61 19.69 16 31 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 32 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 34 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 35 H 0.23 3.65 8.06 -2.91 -0.02 3.62 16 36 H 0.19 2.39 8.06 -2.91 -0.02 2.36 16 37 H 0.05 1.43 7.99 -2.39 -0.02 1.41 16 38 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.36 4.68 9.08 -89.70 -0.81 3.87 16 40 H 0.35 5.29 8.99 -89.69 -0.81 4.49 16 Total: -1.00 -92.84 353.73 -0.04 -92.89 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: -1.08 Total: 40.16 kcal Atomic # 6 Polarization: 28.53 SS G_CDS: 6.78 Total: 35.31 kcal Atomic # 7 Polarization: -164.56 SS G_CDS: -7.71 Total: -172.27 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.06 Total: -39.47 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -92.84 -0.04 -92.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162590860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.687 kcal (2) G-P(sol) polarization free energy of solvation -92.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds