Wall clock time and date at job start Tue Mar 31 2020 21:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86797 * 120.00233 * 2 1 4 4 H 1.48498 * 109.47043 * 269.99775 * 3 2 1 5 5 H 1.48502 * 109.47033 * 29.99377 * 3 2 1 6 6 H 1.48492 * 109.47347 * 149.99487 * 3 2 1 7 7 C 1.40062 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99713 * 180.02562 * 7 2 1 9 9 C 1.41566 * 119.99933 * 0.02562 * 7 2 1 10 10 N 1.33445 * 119.24023 * 359.97438 * 9 7 2 11 11 C 1.32183 * 120.86122 * 180.02562 * 10 9 7 12 12 Cl 1.73595 * 120.33957 * 180.02562 * 11 10 9 13 13 C 1.38847 * 119.32344 * 359.97438 * 11 10 9 14 14 C 1.40007 * 118.58941 * 0.02562 * 13 11 10 15 15 N 1.38539 * 120.44573 * 179.97438 * 14 13 11 16 16 C 1.46501 * 120.00014 * 359.97438 * 15 14 13 17 17 H 1.08997 * 109.50122 * 35.08570 * 16 15 14 18 18 C 1.53112 * 109.50774 * 275.00234 * 16 15 14 19 19 C 1.53124 * 109.16162 * 182.40392 * 18 16 15 20 20 C 1.53032 * 109.27600 * 57.65604 * 19 18 16 21 21 N 1.46842 * 109.52386 * 300.82215 * 20 19 18 22 22 C 1.46901 * 110.99732 * 185.84177 * 21 20 19 23 23 C 1.53367 * 114.57013 * 66.04584 * 22 21 20 24 24 O 1.43348 * 88.49370 * 220.44098 * 23 22 21 25 25 C 1.43342 * 88.32461 * 28.12684 * 24 23 22 26 26 C 1.46846 * 111.20157 * 61.74459 * 21 20 19 27 27 N 1.32589 * 119.10519 * 0.24362 * 14 13 11 28 28 H 0.96998 * 120.00172 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.70786 * 179.97438 * 13 11 10 30 30 H 0.97000 * 120.00015 * 180.02562 * 15 14 13 31 31 H 1.08999 * 109.52172 * 62.50060 * 18 16 15 32 32 H 1.08994 * 109.57749 * 302.34214 * 18 16 15 33 33 H 1.08996 * 109.50322 * 297.71309 * 19 18 16 34 34 H 1.08996 * 109.53229 * 177.61535 * 19 18 16 35 35 H 1.08999 * 109.45943 * 180.80142 * 20 19 18 36 36 H 1.09005 * 109.45978 * 60.83690 * 20 19 18 37 37 H 1.09004 * 113.56521 * 200.31934 * 22 21 20 38 38 H 1.09002 * 113.39529 * 105.52009 * 23 22 21 39 39 H 1.09005 * 113.38849 * 335.36302 * 23 22 21 40 40 H 1.09005 * 113.39677 * 86.74628 * 25 24 23 41 41 H 1.08999 * 113.39618 * 216.90341 * 25 24 23 42 42 H 1.08991 * 109.46103 * 58.27268 * 26 21 20 43 43 H 1.09004 * 109.46189 * 178.24110 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0463 -1.4001 5 1 1.4384 2.6527 0.6999 6 1 3.5384 1.4402 0.7001 7 6 2.0072 -1.2130 0.0005 8 1 3.0872 -1.2130 0.0010 9 6 1.2993 -2.4390 0.0005 10 7 -0.0350 -2.4212 0.0005 11 6 -0.7281 -3.5468 0.0010 12 17 -2.4636 -3.5079 0.0004 13 6 -0.0538 -4.7605 0.0010 14 6 1.3462 -4.7492 0.0011 15 7 2.0579 -5.9378 0.0016 16 6 1.3457 -7.2180 0.0027 17 1 0.4338 -7.1276 -0.5876 18 6 0.9876 -7.6027 1.4408 19 6 0.2973 -8.9695 1.4385 20 6 1.2234 -10.0021 0.7922 21 7 1.5358 -9.5892 -0.5819 22 6 2.3098 -10.6246 -1.2796 23 6 1.5484 -11.9331 -1.5252 24 8 2.7453 -12.6480 -1.1918 25 6 3.1221 -11.5444 -0.3582 26 6 2.2415 -8.3015 -0.6020 27 7 1.9818 -3.5855 0.0060 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5976 -5.6935 0.0019 30 1 3.0278 -5.9224 0.0020 31 1 0.3145 -6.8553 1.8609 32 1 1.8954 -7.6542 2.0419 33 1 -0.6310 -8.9073 0.8707 34 1 0.0777 -9.2685 2.4634 35 1 0.7291 -10.9735 0.7761 36 1 2.1459 -10.0737 1.3685 37 1 2.8582 -10.2504 -2.1441 38 1 1.2395 -12.0661 -2.5620 39 1 0.7344 -12.0990 -0.8195 40 1 2.7193 -11.6082 0.6527 41 1 4.1921 -11.3372 -0.3719 42 1 3.1590 -8.3812 -0.0193 43 1 2.4865 -8.0378 -1.6309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168366629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:05 Heat of formation + Delta-G solvation = 46.805923 kcal Electronic energy + Delta-G solvation = -26804.796281 eV Core-core repulsion = 22912.510885 eV Total energy + Delta-G solvation = -3892.285396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.47903 -39.35886 -38.41773 -35.69958 -35.38107 -33.59810 -32.77760 -31.42141 -30.35058 -28.82036 -27.99106 -26.60164 -26.41022 -24.28054 -23.29029 -22.09421 -21.67585 -20.30281 -19.50809 -18.02682 -17.48388 -16.78996 -16.43620 -16.22503 -15.99013 -15.11707 -14.92010 -14.63761 -14.44824 -14.21913 -14.03402 -13.63856 -13.44469 -13.21402 -13.08277 -13.02725 -12.78614 -12.52407 -11.89418 -11.52008 -11.46507 -11.39552 -11.37810 -11.36701 -10.96359 -10.83581 -10.81306 -10.57192 -10.39363 -10.19921 -9.97629 -9.91369 -9.13459 -9.02123 -8.62694 -8.27950 -7.49977 -7.18476 -6.58096 -4.81342 2.51799 2.95745 2.95877 3.04821 3.08400 3.12800 3.20259 3.63001 3.82333 3.87816 4.06390 4.48890 4.59367 4.63069 4.75050 4.81241 4.85404 4.94087 5.06185 5.13978 5.21293 5.33097 5.39510 5.47766 5.53041 5.61967 5.66306 5.69016 5.80447 5.88968 5.92531 6.09098 6.16276 6.28040 6.39318 6.45261 6.67231 6.70597 6.82498 6.93333 7.12671 7.69840 8.09731 8.17824 8.51349 8.58084 9.04185 10.07752 10.22507 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.002579 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.100282 B =10855.350363 C =11832.190719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.065 3.935 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.394 4.394 8 H 0.095 0.905 9 C 0.435 3.565 10 N -0.528 5.528 11 C 0.269 3.731 12 Cl -0.083 7.083 13 C -0.404 4.404 14 C 0.458 3.542 15 N -0.725 5.725 16 C 0.167 3.833 17 H 0.091 0.909 18 C -0.138 4.138 19 C -0.115 4.115 20 C 0.048 3.952 21 N -0.519 5.519 22 C 0.024 3.976 23 C 0.035 3.965 24 O -0.369 6.369 25 C -0.010 4.010 26 C 0.052 3.948 27 N -0.642 5.642 28 H 0.277 0.723 29 H 0.113 0.887 30 H 0.395 0.605 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.040 0.960 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 -16.920 0.551 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.163 4.163 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.430 4.430 8 H 0.113 0.887 9 C 0.199 3.801 10 N -0.249 5.249 11 C 0.088 3.912 12 Cl -0.055 7.055 13 C -0.437 4.437 14 C 0.211 3.789 15 N -0.361 5.361 16 C 0.060 3.940 17 H 0.108 0.892 18 C -0.177 4.177 19 C -0.153 4.153 20 C -0.079 4.079 21 N -0.243 5.243 22 C -0.086 4.086 23 C -0.043 4.043 24 O -0.286 6.286 25 C -0.088 4.088 26 C -0.076 4.076 27 N -0.372 5.372 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.230 0.770 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.138 0.862 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.560 -16.130 0.230 16.206 hybrid contribution 0.671 -0.118 0.484 0.836 sum 2.231 -16.248 0.714 16.416 Atomic orbital electron populations 1.70145 1.07228 1.28381 1.26464 1.26129 0.95048 1.01426 0.93684 0.86133 0.80324 0.79908 0.79382 1.19218 1.19971 1.18321 1.19350 0.94725 0.87298 1.41589 0.88656 1.19454 0.83587 0.89888 0.87168 1.68593 1.08159 1.25665 1.22487 1.21460 0.85340 0.90808 0.93622 1.98295 1.11688 1.98823 1.96668 1.20942 0.93161 0.97139 1.32433 1.18078 0.87367 0.86171 0.87241 1.44015 1.07724 1.01504 1.82880 1.20672 0.95827 0.81857 0.95627 0.89152 1.22127 1.01056 0.96894 0.97620 1.21565 0.99069 0.94215 1.00444 1.22313 0.98690 0.99106 0.87803 1.61660 1.44241 1.02080 1.16356 1.24649 0.94084 0.91647 0.98224 1.23880 0.89655 0.88343 1.02418 1.89874 1.35633 1.39231 1.63870 1.24586 1.01671 0.86078 0.96510 1.22294 0.95083 0.88482 1.01736 1.68223 1.40141 0.96958 1.31870 0.91158 0.86948 0.77021 0.90623 0.92168 0.90657 0.91129 0.90507 0.94169 0.86151 0.89110 0.89831 0.89460 0.89794 0.94176 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.30 11.42 55.55 0.63 -17.66 16 2 C 0.07 1.62 5.50 -17.35 -0.10 1.52 16 3 Si 0.92 18.16 29.56 -169.99 -5.02 13.14 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.39 -10.52 9.37 -37.63 -0.35 -10.87 16 8 H 0.10 2.43 7.85 -52.48 -0.41 2.01 16 9 C 0.43 12.03 7.37 -158.34 -1.17 10.87 16 10 N -0.53 -14.55 7.86 -9.83 -0.08 -14.63 16 11 C 0.27 6.58 7.33 -17.18 -0.13 6.45 16 12 Cl -0.08 -1.74 29.15 -51.86 -1.51 -3.25 16 13 C -0.40 -8.89 8.78 -38.69 -0.34 -9.23 16 14 C 0.46 10.06 7.69 -154.98 -1.19 8.87 16 15 N -0.73 -12.03 5.23 -53.70 -0.28 -12.31 16 16 C 0.17 2.18 2.31 -67.85 -0.16 2.03 16 17 H 0.09 1.33 6.51 -51.93 -0.34 0.99 16 18 C -0.14 -1.66 5.54 -26.61 -0.15 -1.80 16 19 C -0.11 -1.07 6.09 -26.65 -0.16 -1.23 16 20 C 0.05 0.40 4.04 -3.84 -0.02 0.38 16 21 N -0.52 -4.75 4.79 -227.75 -1.09 -5.84 16 22 C 0.02 0.19 4.47 -67.29 -0.30 -0.11 16 23 C 0.03 0.28 8.31 24.59 0.20 0.48 16 24 O -0.37 -3.79 12.74 -35.23 -0.45 -4.24 16 25 C -0.01 -0.08 7.81 24.64 0.19 0.11 16 26 C 0.05 0.54 4.90 -3.83 -0.02 0.52 16 27 N -0.64 -16.34 10.39 -11.90 -0.12 -16.47 16 28 H 0.28 6.52 8.29 -40.82 -0.34 6.19 16 29 H 0.11 2.19 6.25 -52.49 -0.33 1.86 16 30 H 0.40 6.14 8.73 -40.82 -0.36 5.78 16 31 H 0.08 1.09 7.73 -51.93 -0.40 0.68 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.56 6.32 -51.93 -0.33 0.23 16 36 H 0.04 0.32 6.80 -51.93 -0.35 -0.03 16 37 H 0.12 0.94 7.95 -51.93 -0.41 0.52 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.62 6.73 -51.93 -0.35 0.27 16 40 H 0.09 0.64 5.52 -51.93 -0.29 0.36 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.88 8.02 -51.93 -0.42 0.46 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -29.87 357.52 -11.86 -41.73 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.65 Total: 6.15 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -3.68 Total: 7.99 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -0.94 Total: -66.91 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.45 Total: -4.24 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.14 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -1.51 Total: -3.25 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.87 -11.86 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168366629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.540 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds