Wall clock time and date at job start Tue Mar 31 2020 21:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99683 * 3 2 1 5 5 H 1.48505 * 109.47499 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47262 * 150.00006 * 3 2 1 7 7 C 1.37879 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47340 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47364 * 179.97438 * 11 10 9 13 13 C 1.38400 * 120.00024 * 179.97438 * 12 11 10 14 14 N 1.32506 * 119.20857 * 0.02562 * 13 12 11 15 15 C 1.32380 * 120.71193 * 179.97438 * 14 13 12 16 16 Cl 1.73599 * 120.41275 * 180.02562 * 15 14 13 17 17 C 1.38825 * 119.16556 * 359.97438 * 15 14 13 18 18 C 1.38485 * 118.55074 * 0.02562 * 17 15 14 19 19 C 1.50699 * 120.39558 * 180.02562 * 18 17 15 20 20 H 1.09003 * 109.59950 * 154.99984 * 19 18 17 21 21 C 1.53334 * 109.60401 * 275.32306 * 19 18 17 22 22 C 1.53069 * 108.42567 * 187.28401 * 21 19 18 23 23 C 1.50172 * 109.89248 * 311.10694 * 22 21 19 24 24 O 1.21283 * 118.24775 * 197.60259 * 23 22 21 25 25 N 1.33355 * 123.51102 * 17.57502 * 23 22 21 26 26 C 1.45822 * 124.16533 * 357.96169 * 25 23 22 27 27 N 1.32343 * 119.21177 * 359.73098 * 18 17 15 28 28 H 0.97005 * 119.99656 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 30 30 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 31 31 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 32 32 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 33 33 H 1.09004 * 109.46785 * 299.99692 * 11 10 9 34 34 H 1.09000 * 109.47196 * 59.99588 * 11 10 9 35 35 H 0.97003 * 119.99532 * 359.97438 * 12 11 10 36 36 H 1.08000 * 120.72725 * 180.02562 * 17 15 14 37 37 H 1.08994 * 109.67902 * 307.02248 * 21 19 18 38 38 H 1.08999 * 109.67558 * 67.52278 * 21 19 18 39 39 H 1.09004 * 109.39787 * 71.23197 * 22 21 19 40 40 H 1.09003 * 109.40468 * 191.05696 * 22 21 19 41 41 H 0.96999 * 117.94518 * 177.77976 * 25 23 22 42 42 H 1.09001 * 109.17569 * 258.53918 * 26 25 23 43 43 H 1.08995 * 109.45650 * 139.13964 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5514 -2.6368 0.0022 12 7 6.0397 -4.0181 0.0027 13 6 7.4003 -4.2710 0.0033 14 7 8.2475 -3.2521 0.0039 15 6 9.5549 -3.4598 0.0050 16 17 10.6577 -2.1191 0.0065 17 6 10.0328 -4.7632 0.0060 18 6 9.1186 -5.8034 0.0053 19 6 9.5916 -7.2342 0.0070 20 1 8.8221 -7.8732 0.4402 21 6 9.8825 -7.6816 -1.4305 22 6 10.1828 -9.1825 -1.4187 23 6 11.1916 -9.4933 -0.3506 24 8 11.7813 -10.5516 -0.4085 25 7 11.4742 -8.6678 0.6579 26 6 10.8762 -7.3489 0.8287 27 7 7.8246 -5.5260 0.0092 28 1 -0.4850 0.8401 -0.0004 29 1 3.8752 -0.6806 -0.8889 30 1 3.8745 -0.6801 0.8911 31 1 3.6577 -3.1507 0.8908 32 1 3.6583 -3.1503 -0.8892 33 1 5.9154 -2.1227 -0.8873 34 1 5.9140 -2.1233 0.8927 35 1 5.4092 -4.7553 0.0026 36 1 11.0944 -4.9617 0.0073 37 1 9.0134 -7.4862 -2.0587 38 1 10.7443 -7.1375 -1.8169 39 1 9.2638 -9.7341 -1.2203 40 1 10.5812 -9.4797 -2.3889 41 1 12.1165 -8.9642 1.3216 42 1 11.5844 -6.5891 0.4980 43 1 10.6458 -7.1883 1.8818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168426588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:43 Heat of formation + Delta-G solvation = -4.514626 kcal Electronic energy + Delta-G solvation = -25618.737583 eV Core-core repulsion = 21724.226761 eV Total energy + Delta-G solvation = -3894.510822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.58649 -40.52983 -37.65108 -37.26463 -36.35124 -34.32587 -33.79667 -33.20107 -32.19865 -30.95191 -29.39345 -27.18227 -25.49532 -24.51592 -23.88257 -22.99312 -21.78633 -20.48220 -19.67320 -18.25990 -18.13776 -17.27532 -16.76895 -16.64862 -16.28356 -15.88189 -15.66812 -15.16035 -14.85043 -14.75565 -14.52465 -14.41461 -14.24462 -13.98494 -13.80394 -12.90023 -12.74300 -12.54041 -12.31519 -12.25847 -12.00254 -11.87638 -11.72478 -11.56627 -11.26388 -11.10145 -11.00949 -10.56949 -10.36751 -10.21513 -10.08756 -9.89391 -9.76574 -9.60468 -9.49980 -9.27925 -8.59610 -8.26267 -6.10029 -4.09131 0.65384 0.78978 1.31282 2.19861 2.63423 2.81786 3.27700 3.35583 3.38861 3.43568 3.55534 3.96895 4.09951 4.20496 4.24196 4.40429 4.44825 4.62639 4.66961 4.76224 4.81093 4.95300 5.05901 5.19492 5.23730 5.28312 5.40101 5.43228 5.55375 5.57054 5.71510 5.91236 6.25554 6.31943 6.35614 6.57513 6.68143 6.80486 6.82866 7.16028 7.29611 7.29648 7.71261 7.73803 8.04280 8.45993 8.93714 9.51761 11.03129 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.002105 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.234441 B =13296.690570 C =14646.958311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.115 4.115 11 C 0.127 3.873 12 N -0.681 5.681 13 C 0.592 3.408 14 N -0.563 5.563 15 C 0.276 3.724 16 Cl -0.017 7.017 17 C -0.287 4.287 18 C 0.243 3.757 19 C -0.054 4.054 20 H 0.109 0.891 21 C -0.113 4.113 22 C -0.133 4.133 23 C 0.519 3.481 24 O -0.557 6.557 25 N -0.718 5.718 26 C 0.114 3.886 27 N -0.565 5.565 28 H 0.264 0.736 29 H 0.015 0.985 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.418 0.582 36 H 0.153 0.847 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.403 0.597 42 H 0.078 0.922 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.146 -14.196 0.059 29.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.153 4.153 11 C 0.004 3.996 12 N -0.315 5.315 13 C 0.235 3.765 14 N -0.289 5.289 15 C 0.100 3.900 16 Cl 0.012 6.988 17 C -0.315 4.315 18 C 0.093 3.907 19 C -0.073 4.073 20 H 0.127 0.873 21 C -0.151 4.151 22 C -0.173 4.173 23 C 0.307 3.693 24 O -0.436 6.436 25 N -0.371 5.371 26 C -0.011 4.011 27 N -0.288 5.288 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.256 0.744 36 H 0.170 0.830 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.238 0.762 42 H 0.096 0.904 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 25.071 -14.000 -0.136 28.715 hybrid contribution 1.154 0.850 0.319 1.468 sum 26.225 -13.149 0.183 29.337 Atomic orbital electron populations 1.69913 1.06314 1.26985 1.50829 1.25034 0.94765 0.99250 0.94458 0.86775 0.80388 0.83530 0.78593 1.20232 1.21348 1.18893 1.21080 0.89240 0.94540 1.51250 0.90985 1.19486 0.97331 0.91172 0.96701 1.21736 0.90285 1.01276 1.01981 1.21756 0.96091 0.79472 1.02256 1.44649 1.00354 1.10563 1.75968 1.19096 0.87280 0.83062 0.87066 1.67224 1.02318 1.35868 1.23487 1.21637 0.88812 0.88236 0.91361 1.98438 1.58125 1.46422 1.95864 1.21996 1.02690 0.91277 1.15524 1.20788 0.87378 0.94811 0.87746 1.20355 0.97796 0.91425 0.97766 0.87274 1.21689 1.03636 0.94920 0.94870 1.21660 0.99480 0.97279 0.98897 1.20247 0.83218 0.83384 0.82478 1.90783 1.51803 1.24624 1.76359 1.45430 1.45957 1.17817 1.27861 1.21516 0.94071 0.84494 1.01003 1.67701 1.17218 1.20652 1.23258 0.92663 0.96697 0.96257 0.91944 0.91955 0.91455 0.91460 0.74424 0.82989 0.89520 0.90341 0.87635 0.87518 0.76163 0.90441 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.20 4.04 -27.88 -0.11 -0.31 16 10 C -0.11 -2.04 5.27 -26.73 -0.14 -2.18 16 11 C 0.13 1.94 5.65 -4.04 -0.02 1.92 16 12 N -0.68 -9.08 5.70 -62.31 -0.36 -9.44 16 13 C 0.59 7.86 8.42 -322.82 -2.72 5.14 16 14 N -0.56 -7.69 9.58 -11.02 -0.11 -7.79 16 15 C 0.28 3.03 7.33 -17.10 -0.13 2.90 16 16 Cl -0.02 -0.17 29.15 -51.86 -1.51 -1.68 16 17 C -0.29 -2.33 9.06 -39.27 -0.36 -2.69 16 18 C 0.24 2.06 5.83 -82.28 -0.48 1.58 16 19 C -0.05 -0.30 2.60 -91.64 -0.24 -0.53 16 20 H 0.11 0.64 8.12 -51.93 -0.42 0.22 16 21 C -0.11 -0.55 5.31 -26.52 -0.14 -0.69 16 22 C -0.13 -0.71 6.03 -28.10 -0.17 -0.88 16 23 C 0.52 4.06 7.71 -11.87 -0.09 3.97 16 24 O -0.56 -6.83 17.78 5.55 0.10 -6.73 16 25 N -0.72 -3.80 5.45 -61.35 -0.33 -4.14 16 26 C 0.11 0.45 6.18 -4.45 -0.03 0.42 16 27 N -0.56 -6.41 10.40 -10.17 -0.11 -6.52 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 30 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.42 4.96 8.59 -40.82 -0.35 4.61 16 36 H 0.15 0.77 6.22 -52.49 -0.33 0.44 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.34 8.13 -51.93 -0.42 -0.08 16 39 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.40 1.81 8.80 -40.82 -0.36 1.45 16 42 H 0.08 0.22 6.07 -51.93 -0.32 -0.10 16 43 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -33.80 370.96 -11.61 -45.40 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.93 Total: -0.38 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -5.06 Total: -4.36 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.13 Total: -54.49 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: 0.10 Total: -6.73 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.51 Total: -1.68 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.80 -11.61 -45.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.888 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds