Wall clock time and date at job start Tue Mar 31 2020 21:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47485 * 179.97438 * 11 10 9 13 13 C 1.38403 * 119.99661 * 180.02562 * 12 11 10 14 14 N 1.32503 * 119.21632 * 359.73536 * 13 12 11 15 15 C 1.32370 * 120.71683 * 179.71939 * 14 13 12 16 16 Cl 1.73602 * 120.42058 * 180.27551 * 15 14 13 17 17 C 1.38834 * 119.16327 * 0.54317 * 15 14 13 18 18 C 1.38482 * 118.54513 * 359.72776 * 17 15 14 19 19 C 1.50704 * 120.38913 * 180.02562 * 18 17 15 20 20 H 1.09005 * 109.60031 * 205.30484 * 19 18 17 21 21 C 1.53344 * 109.60464 * 84.98358 * 19 18 17 22 22 C 1.53072 * 108.42604 * 172.71216 * 21 19 18 23 23 C 1.50178 * 109.88990 * 48.89752 * 22 21 19 24 24 O 1.21284 * 118.24101 * 162.39986 * 23 22 21 25 25 N 1.33354 * 123.50862 * 342.41647 * 23 22 21 26 26 C 1.45746 * 124.10769 * 2.22667 * 25 23 22 27 27 N 1.32327 * 119.21702 * 0.02562 * 18 17 15 28 28 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 30 30 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 31 31 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 32 32 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 33 33 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 34 34 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 35 35 H 0.96992 * 119.99570 * 0.02562 * 12 11 10 36 36 H 1.08005 * 120.72451 * 179.75564 * 17 15 14 37 37 H 1.09010 * 109.66773 * 292.44129 * 21 19 18 38 38 H 1.08996 * 109.67536 * 52.93567 * 21 19 18 39 39 H 1.08996 * 109.39535 * 169.02454 * 22 21 19 40 40 H 1.08998 * 109.39930 * 288.85141 * 22 21 19 41 41 H 0.97003 * 117.94385 * 182.22585 * 25 23 22 42 42 H 1.09005 * 109.30164 * 220.61771 * 26 25 23 43 43 H 1.08995 * 109.30488 * 101.23756 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4321 -6.1007 0.0006 13 6 1.9706 -7.4055 0.0004 14 7 0.6647 -7.6297 0.0062 15 6 0.1908 -8.8656 0.0007 16 17 -1.5217 -9.1504 0.0012 17 6 1.0805 -9.9314 0.0003 18 6 2.4384 -9.6597 -0.0002 19 6 3.4410 -10.7849 -0.0013 20 1 4.3776 -10.4406 0.4374 21 6 3.6883 -11.2523 -1.4407 22 6 4.8378 -12.2630 -1.4305 23 6 4.5985 -13.2982 -0.3692 24 8 5.2204 -14.3376 -0.4308 25 7 3.7386 -13.1358 0.6370 26 6 2.8932 -11.9610 0.8081 27 7 2.8453 -8.4006 0.0004 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5567 0.8903 30 1 0.6246 -2.5571 -0.8897 31 1 2.8718 -3.6044 -0.8895 32 1 2.8718 -3.6044 0.8904 33 1 0.8537 -5.0445 0.8914 34 1 0.8532 -5.0451 -0.8886 35 1 3.3857 -5.9235 0.0002 36 1 0.7214 -10.9500 -0.0002 37 1 2.7876 -11.7248 -1.8329 38 1 3.9553 -10.3982 -2.0631 39 1 4.9004 -12.7498 -2.4037 40 1 5.7741 -11.7443 -1.2242 41 1 3.6717 -13.8441 1.2965 42 1 2.8632 -11.6892 1.8633 43 1 1.8830 -12.1917 0.4698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168426589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:46 Heat of formation + Delta-G solvation = -8.074512 kcal Electronic energy + Delta-G solvation = -25557.495462 eV Core-core repulsion = 21662.830272 eV Total energy + Delta-G solvation = -3894.665191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53459 -40.50124 -37.60806 -37.19262 -36.26144 -34.27898 -33.74032 -33.16680 -32.15305 -30.73109 -29.30169 -26.78679 -25.43674 -24.47131 -23.85669 -23.07764 -21.80284 -20.55124 -19.65441 -18.20753 -18.06615 -17.23745 -16.63052 -16.34882 -16.23318 -15.83102 -15.60859 -15.10398 -14.72441 -14.64829 -14.49257 -14.42361 -14.29823 -14.11339 -13.78125 -12.79657 -12.45543 -12.34357 -12.27424 -12.18593 -11.87353 -11.76631 -11.64669 -11.52292 -11.15802 -10.95133 -10.78487 -10.64036 -10.51776 -10.29737 -10.19266 -9.82854 -9.57716 -9.55249 -9.43187 -9.19361 -8.40871 -8.18482 -6.05624 -4.08877 0.71684 0.85073 1.38133 2.21717 2.68275 2.86840 3.29676 3.34584 3.36549 3.49662 3.60285 4.00543 4.12976 4.23237 4.28952 4.41299 4.50483 4.66110 4.71672 4.79444 4.85297 4.98818 5.11119 5.22622 5.30213 5.30505 5.44142 5.55295 5.61386 5.67857 5.78771 6.06226 6.27773 6.45855 6.50958 6.68291 6.82596 6.84696 6.96157 7.37281 7.57997 7.69871 7.75756 7.92403 8.11278 8.33372 8.97259 9.55450 11.05501 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.002013 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.826955 B =13907.551030 C =15347.713348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.122 4.122 11 C 0.129 3.871 12 N -0.681 5.681 13 C 0.592 3.408 14 N -0.561 5.561 15 C 0.276 3.724 16 Cl -0.017 7.017 17 C -0.288 4.288 18 C 0.242 3.758 19 C -0.053 4.053 20 H 0.109 0.891 21 C -0.113 4.113 22 C -0.133 4.133 23 C 0.519 3.481 24 O -0.558 6.558 25 N -0.718 5.718 26 C 0.114 3.886 27 N -0.566 5.566 28 H 0.262 0.738 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.416 0.584 36 H 0.152 0.848 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.403 0.597 42 H 0.085 0.915 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 -26.885 0.016 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.160 4.160 11 C 0.007 3.993 12 N -0.315 5.315 13 C 0.235 3.765 14 N -0.287 5.287 15 C 0.100 3.900 16 Cl 0.012 6.988 17 C -0.316 4.316 18 C 0.092 3.908 19 C -0.073 4.073 20 H 0.127 0.873 21 C -0.151 4.151 22 C -0.173 4.173 23 C 0.307 3.693 24 O -0.436 6.436 25 N -0.370 5.370 26 C -0.011 4.011 27 N -0.290 5.290 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.254 0.746 36 H 0.170 0.830 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.238 0.762 42 H 0.103 0.897 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.725 -25.927 -0.180 26.194 hybrid contribution 0.052 0.185 0.339 0.389 sum 3.777 -25.742 0.159 26.018 Atomic orbital electron populations 1.69950 1.06043 1.26847 1.50355 1.25025 0.94876 0.99315 0.95220 0.86635 0.79564 0.83040 0.78616 1.20233 1.21253 1.20230 1.21151 0.92970 0.90899 1.51211 0.92680 1.19007 0.93748 0.90684 0.97702 1.21922 0.99921 0.93087 1.01105 1.21755 0.91294 0.83969 1.02321 1.44724 1.10644 1.00329 1.75808 1.19113 0.83173 0.87193 0.87052 1.67230 1.14981 1.23154 1.23340 1.21643 0.87846 0.89223 0.91308 1.98438 1.09533 1.95000 1.95856 1.21988 0.93377 1.00554 1.15694 1.20767 0.91324 0.90858 0.87859 1.20350 0.98241 0.90916 0.97781 0.87313 1.21697 0.99033 0.99515 0.94893 1.21658 1.00720 0.95953 0.98974 1.20251 0.78455 0.88242 0.82390 1.90781 1.48150 1.28570 1.76121 1.45413 1.41585 1.21825 1.28209 1.21506 0.94133 0.84388 1.01086 1.67690 1.38585 0.99321 1.23387 0.92842 0.96213 0.96223 0.92575 0.92586 0.91424 0.91441 0.74599 0.83034 0.90340 0.89526 0.87529 0.87676 0.76158 0.89658 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.65 4.97 -27.88 -0.14 0.51 16 10 C -0.12 -2.29 5.27 -26.74 -0.14 -2.44 16 11 C 0.13 2.12 5.65 -4.04 -0.02 2.09 16 12 N -0.68 -9.56 5.70 -62.31 -0.36 -9.91 16 13 C 0.59 8.22 8.42 -322.82 -2.72 5.50 16 14 N -0.56 -8.06 9.58 -11.02 -0.11 -8.17 16 15 C 0.28 3.20 7.33 -17.10 -0.13 3.07 16 16 Cl -0.02 -0.17 29.15 -51.86 -1.51 -1.69 16 17 C -0.29 -2.48 9.06 -39.27 -0.36 -2.83 16 18 C 0.24 2.15 5.84 -82.29 -0.48 1.67 16 19 C -0.05 -0.31 2.61 -91.63 -0.24 -0.55 16 20 H 0.11 0.67 8.13 -51.93 -0.42 0.25 16 21 C -0.11 -0.58 5.31 -26.52 -0.14 -0.72 16 22 C -0.13 -0.74 6.03 -28.10 -0.17 -0.91 16 23 C 0.52 4.16 7.71 -11.87 -0.09 4.06 16 24 O -0.56 -6.92 17.78 5.55 0.10 -6.82 16 25 N -0.72 -3.96 5.45 -61.39 -0.33 -4.29 16 26 C 0.11 0.48 6.16 -4.49 -0.03 0.45 16 27 N -0.57 -6.69 10.39 -10.17 -0.11 -6.79 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.42 5.17 8.59 -40.82 -0.35 4.82 16 36 H 0.15 0.83 6.21 -52.48 -0.33 0.50 16 37 H 0.08 0.36 8.13 -51.92 -0.42 -0.06 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.40 1.89 8.80 -40.82 -0.36 1.53 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.24 6.06 -51.93 -0.31 -0.07 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -33.18 374.52 -11.98 -45.16 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.96 Total: -0.49 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -5.06 Total: -3.25 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.16 Total: -54.76 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: 0.10 Total: -6.82 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.51 Total: -1.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.18 -11.98 -45.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.086 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds