Wall clock time and date at job start Tue Mar 31 2020 20:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99956 * 2 1 4 4 H 1.48503 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47073 * 300.00006 * 3 2 1 6 6 H 1.48494 * 109.47091 * 60.00159 * 3 2 1 7 7 C 1.37879 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00191 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00153 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.39752 * 66.46354 * 9 7 2 11 11 O 1.42100 * 106.40458 * 293.54722 * 9 7 2 12 12 N 1.65599 * 107.21683 * 180.02562 * 9 7 2 13 13 C 1.46921 * 120.63180 * 90.00476 * 12 9 7 14 14 C 1.53197 * 108.77762 * 126.40899 * 13 12 9 15 15 C 1.53031 * 109.33725 * 54.61833 * 14 13 12 16 16 H 1.09007 * 109.46360 * 58.67128 * 15 14 13 17 17 N 1.46901 * 109.46241 * 178.62967 * 15 14 13 18 18 C 1.46844 * 111.00306 * 195.38546 * 17 15 14 19 19 C 1.53039 * 109.52486 * 174.15888 * 18 17 15 20 20 C 1.53121 * 109.27406 * 59.18050 * 19 18 17 21 21 C 1.53127 * 109.16355 * 302.34511 * 20 19 18 22 22 C 1.46844 * 110.99797 * 71.17314 * 17 15 14 23 23 C 1.53037 * 109.54324 * 298.68259 * 15 14 13 24 24 F 1.39898 * 109.47120 * 301.36821 * 23 15 14 25 25 F 1.39900 * 109.49923 * 181.28461 * 23 15 14 26 26 C 1.46927 * 120.63147 * 270.02243 * 12 9 7 27 27 H 0.97000 * 119.99628 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58571 * 6.62236 * 13 12 9 29 29 H 1.08999 * 109.70280 * 246.27172 * 13 12 9 30 30 H 1.08997 * 109.49828 * 174.58749 * 14 13 12 31 31 H 1.09002 * 109.49842 * 294.64985 * 14 13 12 32 32 H 1.08994 * 109.46518 * 294.17591 * 18 17 15 33 33 H 1.09003 * 109.46094 * 54.14355 * 18 17 15 34 34 H 1.08998 * 109.50590 * 299.24384 * 19 18 17 35 35 H 1.08994 * 109.53878 * 179.14121 * 19 18 17 36 36 H 1.09004 * 109.52269 * 182.44203 * 20 19 18 37 37 H 1.08992 * 109.57944 * 62.28246 * 20 19 18 38 38 H 1.09004 * 109.50042 * 297.71456 * 21 20 19 39 39 H 1.08996 * 109.53445 * 177.62053 * 21 20 19 40 40 H 1.09001 * 109.46819 * 305.85997 * 22 17 15 41 41 H 1.09008 * 109.46058 * 65.82753 * 22 17 15 42 42 H 1.09003 * 109.58391 * 353.37515 * 26 12 9 43 43 H 1.08991 * 109.58439 * 113.65847 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4517 -2.7956 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 2.7567 -4.4849 1.2637 14 6 2.5738 -6.0058 1.2492 15 6 3.2405 -6.5845 -0.0008 16 1 4.2992 -6.3251 -0.0009 17 7 3.0952 -8.0464 -0.0007 18 6 4.0135 -8.6666 -0.9642 19 6 3.9395 -10.1896 -0.8338 20 6 2.5037 -10.6505 -1.0995 21 6 1.5615 -9.9530 -0.1143 22 6 1.7046 -8.4369 -0.2654 23 6 2.5742 -6.0054 -1.2509 24 9 1.2092 -6.3114 -1.2361 25 9 3.1647 -6.5572 -2.3929 26 6 2.7572 -4.4845 -1.2648 27 1 -0.4849 0.8401 0.0004 28 1 2.2000 -4.0578 2.0978 29 1 3.8147 -4.2450 1.3695 30 1 3.0336 -6.4360 2.1390 31 1 1.5103 -6.2443 1.2379 32 1 3.7307 -8.3745 -1.9754 33 1 5.0315 -8.3338 -0.7615 34 1 4.2355 -10.4835 0.1732 35 1 4.6097 -10.6506 -1.5592 36 1 2.4369 -11.7301 -0.9652 37 1 2.2200 -10.3921 -2.1197 38 1 1.8201 -10.2433 0.9041 39 1 0.5326 -10.2444 -0.3254 40 1 1.0455 -7.9374 0.4446 41 1 1.4325 -8.1458 -1.2801 42 1 2.2007 -4.0571 -2.0990 43 1 3.8148 -4.2424 -1.3688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972865.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:58 Heat of formation + Delta-G solvation = -179.363798 kcal Electronic energy + Delta-G solvation = -30111.896793 eV Core-core repulsion = 25761.158461 eV Total energy + Delta-G solvation = -4350.738331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.06636 -46.93305 -39.22477 -37.24647 -35.41151 -34.06708 -33.86216 -33.12692 -31.03840 -30.47874 -29.58071 -26.19859 -24.89652 -23.44736 -23.10174 -22.65723 -20.33262 -19.95573 -18.92214 -17.85327 -17.04305 -16.83972 -16.37067 -16.23658 -16.02800 -15.09285 -14.97604 -14.79472 -14.57115 -14.22147 -14.01953 -13.68616 -13.55840 -13.36340 -13.28046 -13.21403 -13.02136 -12.61195 -12.40736 -12.20673 -12.04331 -11.91160 -11.68966 -11.28660 -11.27631 -11.20163 -11.03478 -10.94879 -10.77508 -10.63218 -10.50158 -10.43634 -10.38456 -10.19397 -10.07444 -9.32055 -9.06624 -8.57099 -8.16149 -6.76647 -5.40151 2.06891 3.01484 3.09786 3.16533 3.55866 3.82100 3.97074 4.18120 4.24549 4.47458 4.57042 4.58159 4.72162 4.80839 4.84455 5.08333 5.16776 5.27693 5.35309 5.41110 5.48212 5.50791 5.57318 5.63323 5.68325 5.77248 5.78431 5.83456 5.84276 5.86875 5.88135 6.01717 6.02605 6.11197 6.24375 6.27814 6.31778 6.51974 6.89483 6.98203 7.25390 7.33425 7.89646 8.81950 10.17220 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.003542 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.356637 B = 7904.122857 C = 8014.377730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.132 3.868 3 Si 0.922 3.078 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.270 1.270 7 C -1.020 5.020 8 H 0.104 0.896 9 S 2.712 3.288 10 O -0.998 6.998 11 O -0.997 6.997 12 N -1.006 6.006 13 C 0.117 3.883 14 C -0.122 4.122 15 C 0.057 3.943 16 H 0.110 0.890 17 N -0.525 5.525 18 C 0.036 3.964 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.117 4.117 22 C 0.033 3.967 23 C 0.244 3.756 24 F -0.186 7.186 25 F -0.199 7.199 26 C 0.092 3.908 27 H 0.291 0.709 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.115 0.885 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.275 -15.801 -0.214 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.086 4.086 3 Si 0.746 3.254 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.195 1.195 7 C -1.154 5.154 8 H 0.122 0.878 9 S 2.813 3.187 10 O -0.988 6.988 11 O -0.987 6.987 12 N -0.839 5.839 13 C -0.009 4.009 14 C -0.162 4.162 15 C -0.053 4.053 16 H 0.128 0.872 17 N -0.247 5.247 18 C -0.091 4.091 19 C -0.151 4.151 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.095 4.095 23 C 0.204 3.796 24 F -0.167 7.167 25 F -0.180 7.180 26 C -0.037 4.037 27 H 0.102 0.898 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.133 0.867 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.258 -16.089 0.240 18.086 hybrid contribution 0.707 1.390 -1.020 1.864 sum 8.965 -14.699 -0.780 17.235 Atomic orbital electron populations 1.69904 1.06801 1.30792 1.39855 1.24775 0.94498 1.00896 0.88454 0.86108 0.80423 0.80255 0.78662 1.18554 1.19542 1.19506 1.30605 1.06192 1.11548 1.67062 0.87779 1.00730 0.72043 0.72936 0.72988 1.93363 1.72409 1.87368 1.45688 1.93356 1.72326 1.87408 1.45607 1.58316 1.62592 1.54447 1.08588 1.21407 1.00199 0.92414 0.86875 1.21982 1.02186 0.95560 0.96439 1.22737 1.01472 0.88117 0.92990 0.87234 1.62112 1.06603 1.05586 1.50411 1.22436 0.96488 0.94842 0.95359 1.21551 0.96725 0.94784 1.02055 1.21583 0.95308 0.99664 0.99408 1.21613 0.99123 0.94719 0.99992 1.22701 0.88967 0.95904 1.01892 1.22526 0.76210 0.95888 0.84941 1.92962 1.33381 1.93718 1.96634 1.92906 1.83863 1.86943 1.54246 1.22054 1.02546 0.89307 0.89800 0.89810 0.87626 0.91472 0.88845 0.90410 0.92575 0.90876 0.91333 0.91736 0.92068 0.92306 0.91367 0.91627 0.89982 0.92462 0.86652 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.47 13.19 55.43 0.73 -23.74 16 2 C 0.13 3.61 5.46 -17.82 -0.10 3.52 16 3 Si 0.92 20.11 29.54 -169.99 -5.02 15.09 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 7 C -1.02 -27.35 9.75 30.60 0.30 -27.05 16 8 H 0.10 2.54 7.81 -52.48 -0.41 2.13 16 9 S 2.71 70.38 5.01 -107.50 -0.54 69.84 16 10 O -1.00 -28.76 16.61 -57.17 -0.95 -29.71 16 11 O -1.00 -28.20 16.61 -57.17 -0.95 -29.15 16 12 N -1.01 -19.41 3.27 -113.52 -0.37 -19.78 16 13 C 0.12 1.82 6.48 -3.71 -0.02 1.79 16 14 C -0.12 -1.64 5.25 -26.61 -0.14 -1.78 16 15 C 0.06 0.74 2.01 -67.68 -0.14 0.60 16 16 H 0.11 1.22 7.88 -51.92 -0.41 0.81 16 17 N -0.52 -6.36 4.56 -226.65 -1.03 -7.40 16 18 C 0.04 0.39 5.00 -3.83 -0.02 0.37 16 19 C -0.11 -1.04 6.09 -26.65 -0.16 -1.21 16 20 C -0.12 -1.15 6.00 -26.60 -0.16 -1.31 16 21 C -0.12 -1.22 6.09 -26.65 -0.16 -1.38 16 22 C 0.03 0.42 3.86 -3.84 -0.01 0.40 16 23 C 0.24 3.78 1.38 -26.61 -0.04 3.74 16 24 F -0.19 -3.33 12.67 2.25 0.03 -3.30 16 25 F -0.20 -2.94 14.08 2.25 0.03 -2.90 16 26 C 0.09 1.55 5.96 -3.71 -0.02 1.53 16 27 H 0.29 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.11 1.77 6.91 -51.93 -0.36 1.41 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.17 6.28 -51.93 -0.33 0.84 16 32 H 0.06 0.68 5.66 -51.93 -0.29 0.39 16 33 H 0.07 0.72 7.96 -51.93 -0.41 0.30 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.12 6.24 -51.93 -0.32 0.80 16 41 H 0.06 0.83 5.72 -51.92 -0.30 0.54 16 42 H 0.12 2.15 6.92 -51.93 -0.36 1.79 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 343.17 15.07 5.17 5.17 Total: -1.00 -33.51 343.17 -9.71 -43.22 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.13 Total: 3.42 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -0.68 Total: -20.77 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.67 Total: -50.92 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -1.90 Total: -58.85 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.06 Total: -6.21 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 70.38 SS G_CDS: -0.54 Total: 69.84 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.51 -9.71 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972865.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.145 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds