Wall clock time and date at job start Tue Mar 31 2020 21:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34018 * 119.57253 * 2 1 4 4 C 1.33779 * 122.06018 * 179.70944 * 3 2 1 5 5 C 1.34834 * 121.03105 * 0.56801 * 4 3 2 6 6 C 1.41732 * 119.02044 * 359.71992 * 5 4 3 7 7 O 1.22171 * 120.92887 * 179.97438 * 6 5 4 8 8 C 1.35115 * 119.56933 * 180.26966 * 2 1 3 9 9 O 1.36088 * 120.55724 * 0.02562 * 8 2 1 10 10 C 1.42901 * 116.99768 * 90.00223 * 9 8 2 11 11 C 1.50705 * 109.46523 * 179.97438 * 10 9 8 12 12 O 1.21274 * 120.00353 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99765 * 179.97438 * 13 11 10 15 15 H 1.08992 * 110.64476 * 36.69236 * 14 13 11 16 16 C 1.54324 * 110.72258 * 273.54318 * 14 13 11 17 17 N 1.47013 * 107.27609 * 219.44559 * 16 14 13 18 18 C 1.36944 * 125.65232 * 178.97533 * 17 16 14 19 19 H 1.08001 * 119.99399 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99992 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00399 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99832 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47185 * 59.99885 * 22 20 18 24 24 H 1.48499 * 109.46935 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46869 * 300.00227 * 22 20 18 26 26 C 1.47426 * 108.70205 * 358.94390 * 17 16 14 27 27 C 1.54909 * 104.83345 * 24.12898 * 26 17 16 28 28 H 1.09004 * 111.00258 * 204.92181 * 27 26 17 29 29 O 1.42901 * 111.00542 * 81.06262 * 27 26 17 30 30 H 1.09002 * 109.47152 * 269.72851 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.72952 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.72932 * 1 2 3 33 33 H 1.08003 * 119.48015 * 180.26739 * 4 3 2 34 34 H 1.08001 * 120.49480 * 179.70582 * 5 4 3 35 35 H 1.08997 * 109.46823 * 299.99223 * 10 9 8 36 36 H 1.08990 * 109.47654 * 59.99850 * 10 9 8 37 37 H 0.96998 * 120.00067 * 359.97438 * 13 11 10 38 38 H 1.08997 * 109.88165 * 338.86941 * 16 14 13 39 39 H 1.09000 * 109.87904 * 100.02906 * 16 14 13 40 40 H 0.97001 * 120.00382 * 179.97438 * 21 20 18 41 41 H 1.09008 * 110.36867 * 142.96506 * 26 17 16 42 42 H 1.09000 * 110.36667 * 265.17942 * 26 17 16 43 43 H 0.96697 * 113.99363 * 67.80643 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1684 1.1656 0.0000 4 6 3.5050 1.2237 0.0057 5 6 4.2496 0.0996 0.0004 6 6 3.5960 -1.1580 -0.0055 7 8 4.2364 -2.1985 -0.0109 8 6 2.1738 -1.1752 -0.0055 9 8 1.4960 -2.3552 -0.0116 10 6 1.1734 -2.9115 -1.2878 11 6 0.4297 -4.2083 -1.0969 12 8 0.1991 -4.6161 0.0217 13 7 0.0208 -4.9148 -2.1694 14 6 -0.7016 -6.1756 -1.9839 15 1 -1.3661 -6.1145 -1.1221 16 6 0.2847 -7.3526 -1.8305 17 7 -0.2806 -8.4943 -2.5643 18 6 0.2998 -9.7282 -2.6907 19 1 1.2553 -9.9255 -2.2275 20 6 -0.3400 -10.7253 -3.4139 21 7 -1.5042 -10.4847 -3.9788 22 14 0.4513 -12.4087 -3.5857 23 1 0.6399 -13.0067 -2.2396 24 1 -0.4263 -13.2875 -4.3998 25 1 1.7698 -12.2699 -4.2547 26 6 -1.5760 -8.0910 -3.1409 27 6 -1.4918 -6.5493 -3.2659 28 1 -2.4857 -6.1017 -3.2566 29 8 -0.7719 -6.1691 -4.4403 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3633 -0.8876 -0.5180 32 1 -0.3633 0.8924 -0.5096 33 1 3.9951 2.1860 0.0099 34 1 5.3281 0.1566 0.0003 35 1 0.5477 -2.2115 -1.8415 36 1 2.0911 -3.0980 -1.8453 37 1 0.2049 -4.5884 -3.0641 38 1 1.2525 -7.0827 -2.2531 39 1 0.3962 -7.6078 -0.7767 40 1 -1.9512 -11.1814 -4.4845 41 1 -1.7118 -8.5443 -4.1230 42 1 -2.3920 -8.3754 -2.4766 43 1 -1.2266 -6.3826 -5.2666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219987509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:16 Heat of formation + Delta-G solvation = -104.821926 kcal Electronic energy + Delta-G solvation = -29208.112324 eV Core-core repulsion = 24836.249935 eV Total energy + Delta-G solvation = -4371.862389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.46326 -39.97494 -39.15674 -38.14910 -37.44935 -34.73209 -33.96772 -33.41056 -32.86447 -31.73095 -29.54005 -28.51186 -27.77675 -26.55482 -24.65389 -24.24196 -23.08497 -20.98385 -20.46134 -19.75137 -19.15891 -18.86984 -17.64601 -17.34187 -17.13133 -16.74746 -16.55903 -15.96271 -15.76714 -15.29429 -14.89525 -14.62805 -14.54300 -14.23013 -14.09389 -14.04850 -13.76750 -13.55391 -13.22836 -13.00529 -12.90791 -12.81193 -12.54295 -12.34889 -11.75447 -11.31813 -11.06305 -10.89561 -10.81621 -10.60415 -10.36511 -10.13661 -10.04557 -9.81317 -9.69089 -9.57980 -9.24067 -8.93459 -8.73143 -8.65791 -6.82734 -5.67256 -3.06781 0.43935 0.54657 1.75391 2.62293 2.74476 3.11252 3.43098 3.46328 3.48334 3.62215 3.93522 4.04513 4.35903 4.49578 4.57263 4.62572 4.72820 4.80799 4.87972 4.94772 5.01296 5.12458 5.27492 5.34242 5.37346 5.47837 5.50902 5.64564 5.73582 5.92285 6.04040 6.27654 6.52731 6.55434 6.75049 6.86183 6.98384 7.26699 7.51876 7.58105 7.71950 7.77860 8.10929 8.32901 8.41946 9.20726 9.81513 10.44676 11.38029 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.023102 B = 0.002266 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.741661 B =12351.115269 C =13023.213225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.112 3.888 3 O -0.207 6.207 4 C 0.106 3.894 5 C -0.301 4.301 6 C 0.380 3.620 7 O -0.468 6.468 8 C -0.086 4.086 9 O -0.273 6.273 10 C 0.041 3.959 11 C 0.513 3.487 12 O -0.519 6.519 13 N -0.705 5.705 14 C 0.145 3.855 15 H 0.101 0.899 16 C 0.130 3.870 17 N -0.597 5.597 18 C -0.215 4.215 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.929 5.929 22 Si 0.917 3.083 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.127 3.873 27 C 0.068 3.932 28 H 0.059 0.941 29 O -0.561 6.561 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.207 0.793 34 H 0.162 0.838 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.408 0.592 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.252 0.748 41 H 0.116 0.884 42 H 0.023 0.977 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.431 29.358 2.380 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.064 3.936 3 O -0.110 6.110 4 C 0.041 3.959 5 C -0.322 4.322 6 C 0.267 3.733 7 O -0.352 6.352 8 C -0.133 4.133 9 O -0.189 6.189 10 C -0.036 4.036 11 C 0.297 3.703 12 O -0.394 6.394 13 N -0.359 5.359 14 C 0.041 3.959 15 H 0.119 0.881 16 C 0.003 3.997 17 N -0.323 5.323 18 C -0.343 4.343 19 H 0.096 0.904 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.748 3.252 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.001 3.999 27 C 0.008 3.992 28 H 0.077 0.923 29 O -0.367 6.367 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.223 0.777 34 H 0.179 0.821 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.243 0.757 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.133 0.867 42 H 0.041 0.959 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 2.778 28.611 3.706 28.983 hybrid contribution 0.451 -0.936 -1.031 1.464 sum 3.229 27.675 2.675 27.991 Atomic orbital electron populations 1.20949 0.84746 1.05096 1.05485 1.22927 0.95145 0.82548 0.93014 1.82952 1.20669 1.31965 1.75367 1.24126 0.78826 1.00963 0.91943 1.23135 1.03424 0.93241 1.12355 1.17994 0.88494 0.90088 0.76723 1.90874 1.68648 1.35142 1.40527 1.20183 0.92855 0.86392 1.13868 1.86322 1.73271 1.32831 1.26434 1.22543 1.00455 0.94434 0.86214 1.19956 0.79774 0.85099 0.85453 1.90747 1.54913 1.69987 1.23783 1.45684 1.58135 1.23165 1.08890 1.22164 0.93860 0.82640 0.97273 0.88107 1.21613 0.95144 0.87264 0.95702 1.44283 1.19899 1.08534 1.59581 1.19073 1.02069 0.86357 1.26838 0.90430 1.24748 0.97047 0.98493 1.00495 1.69699 1.15894 1.32546 1.39688 0.86102 0.78144 0.83362 0.77628 1.21175 1.21586 1.21166 1.22610 0.87696 0.87106 1.02497 1.23579 0.92517 0.98790 0.84344 0.92274 1.86238 1.50331 1.84358 1.15795 0.88038 0.88194 0.89266 0.77666 0.82090 0.90114 0.89484 0.75667 0.95166 0.95236 0.93703 0.86665 0.95930 0.77288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 9.96 36.01 0.36 -0.22 16 2 C 0.11 0.88 6.97 -35.42 -0.25 0.63 16 3 O -0.21 -1.19 9.74 7.85 0.08 -1.12 16 4 C 0.11 0.45 11.36 29.52 0.34 0.79 16 5 C -0.30 -2.34 10.03 -39.46 -0.40 -2.74 16 6 C 0.38 4.92 6.81 -36.72 -0.25 4.67 16 7 O -0.47 -8.30 17.75 -10.25 -0.18 -8.48 16 8 C -0.09 -1.02 5.72 -39.16 -0.22 -1.24 16 9 O -0.27 -4.01 8.61 -47.82 -0.41 -4.42 16 10 C 0.04 0.52 6.14 36.01 0.22 0.74 16 11 C 0.51 8.40 7.90 -10.98 -0.09 8.31 16 12 O -0.52 -10.77 16.22 -14.35 -0.23 -11.00 16 13 N -0.71 -11.08 5.09 -52.03 -0.26 -11.35 16 14 C 0.15 2.74 3.12 -66.09 -0.21 2.53 16 15 H 0.10 1.93 7.69 -51.93 -0.40 1.53 16 16 C 0.13 3.00 6.99 -3.07 -0.02 2.98 16 17 N -0.60 -15.71 3.39 -170.08 -0.58 -16.28 16 18 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.37 5.49 -17.44 -0.10 -0.47 16 21 N -0.93 -26.75 10.09 55.49 0.56 -26.19 16 22 Si 0.92 22.49 29.55 -169.99 -5.02 17.47 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.13 2.97 5.62 -2.53 -0.01 2.96 16 27 C 0.07 1.22 4.28 -24.58 -0.11 1.12 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 O -0.56 -9.32 12.23 -35.23 -0.43 -9.75 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.62 6.18 -51.93 -0.32 0.30 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.21 -0.15 8.06 -52.48 -0.42 -0.57 16 34 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.08 0.68 7.21 -51.93 -0.37 0.31 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.41 5.55 7.57 -40.82 -0.31 5.24 16 38 H 0.03 0.73 8.03 -51.93 -0.42 0.31 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.12 2.98 5.87 -51.92 -0.30 2.67 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.38 5.02 9.12 45.56 0.42 5.44 16 LS Contribution 367.43 15.07 5.54 5.54 Total: -1.00 -39.34 367.43 -6.47 -45.82 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.64 Total: 6.03 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: -0.89 Total: 13.73 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.28 Total: -53.82 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.18 Total: -34.76 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -39.34 -6.47 -45.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219987509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.004 kcal (2) G-P(sol) polarization free energy of solvation -39.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds